cluster # 3730

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Oryza sativa
cluster # 3730 cluster # 3730 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3730#0 length = 786 sequences # 1

consensus_3730#1 length = 589 sequences # 1

consensusID : consensus_3730#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 786
fasta sequence

                              [TCTCTTGTTGCAGATCAGGATTTTAAGTCTCTTGTTGTACTTGAAACGTTTGCAATGTGCAAATCTTTACATGGTAAAAAGGAATTCATTACTGCAACTACAAAAGGATTTCATTTCGTATCAGCATTTCACCTGACGGCATTAGTTTACACCAGTGAAAATGAGTGAAAACCCACCAAAATGTTTCCATATATCAGGATTTGATCATTCCTGAACCTCTTCAGCTATTCAGTTCAGTGCTCTTGTGTTCGTCTGAAAAACTCTGAACTGTTTTCAGTTCATGAATACTACAAATTGCTCTCTTCCAATGATGAACAATCCATCAATCAGCTGCTCGTCTCGCCGCCGTGGATCGAGCTCGCCCTCGCCGCGGTGAATCGAGACCGGCCGGGCAGCGGCGGCGTGGCCTTCCCCCTGGGGCGCAGCATGTGGACAACCTCCGGCATGGCGGGTCGCCGCTTGGGGCTCTCCTGGATGCAGAGCAGCGCCGCGCGGGCGCACCGCCGCATCTCCCGCTGCTGCGACAGCGCGCGCCGCCTCGCCGGGAGCGAGAGGCAGCGCGGCAGCGCCCCGCCGCGGAACGACGCGGCGTGCAGCGGCGGGTCGACCAGCTCCTTCAGCCTCCGCGCCACGCGCGCGCCGCAGCACCATGATCTCACCCATGCCCATGTTAATAAATCTTTGTGGAACCGTGTCTGATTTGGTTGAGTCCATCTTTTTCCACTTATGATCTCCAGAACCATGACCCCGAAGCTATACACATCGGTTTTGACTGAGAAATACCTT]

[+] EMBL CB631323             [TCTCTTGTTGCAGATCAGGATTTTAAGTCTCTTGTTGTACTTGAAACGTTTGCAATGTGCAAATCTTTACATGGTAAAAAGGAATTCATTACTGCAACTACAAAAGGATTTCATTTCGTATCAGCATTTCACCTGACGGCATTAGTTTACACCAGTGAAAATGAGTGAAAACCCACCAAAATGTTTCCATATATCAGGATTTGATCATTCCTGAACCTCTTCAGCTATTCAGTTCAGTGCTCTTGTGTTCGTCTGAAAAACTCTGAACTGTTTTCAGTTCATGAATACTACAAATTGCTCTCTTCCAATGATGAACAATCCATCAATCAGCTGCTCGTCTCGCCGCCGTGGATCGAGCTCGCCCTCGCCGCGGTGAATCGAGACCGGCCGGGCAGCGGCGGCGTGGCCTTCCCCCTGGGGCGCAGCATGTGGACAACCTCCGGCATGGCGGGTCGCCGCTTGGGGCTCTCCTGGATGCAGAGCAGCGCCGCGCGGGCGCACCGCCGCATCTCCCGCTGCTGCGACAGCGCGCGCCGCCTCGCCGGGAGCGAGAGGCAGCGCGGCAGCGCCCCGCCGCGGAACGACGCGGCGTGCAGCGGCGGGTCGACCAGCTCCTTCAGCCTCCGCGCCACGCGCGCGCCGCAGCACCATGATCTCACCCATGCCCATGTTAATAAATCTTTGTGGAACCGTGTCTGATTTGGTTGAGTCCATCTTTTTCCACTTATGATCTCCAGAACCATGACCCCGAAGCTATACACATCGGTTTTGACTGAGAAATACCTT]




>consensus_3730#0
TCTCTTGTTGCAGATCAGGATTTTAAGTCTCTTGTTGTACTTGAAACGTTTGCAATGTGC
AAATCTTTACATGGTAAAAAGGAATTCATTACTGCAACTACAAAAGGATTTCATTTCGTA
TCAGCATTTCACCTGACGGCATTAGTTTACACCAGTGAAAATGAGTGAAAACCCACCAAA
ATGTTTCCATATATCAGGATTTGATCATTCCTGAACCTCTTCAGCTATTCAGTTCAGTGC
TCTTGTGTTCGTCTGAAAAACTCTGAACTGTTTTCAGTTCATGAATACTACAAATTGCTC
TCTTCCAATGATGAACAATCCATCAATCAGCTGCTCGTCTCGCCGCCGTGGATCGAGCTC
GCCCTCGCCGCGGTGAATCGAGACCGGCCGGGCAGCGGCGGCGTGGCCTTCCCCCTGGGG
CGCAGCATGTGGACAACCTCCGGCATGGCGGGTCGCCGCTTGGGGCTCTCCTGGATGCAG
AGCAGCGCCGCGCGGGCGCACCGCCGCATCTCCCGCTGCTGCGACAGCGCGCGCCGCCTC
GCCGGGAGCGAGAGGCAGCGCGGCAGCGCCCCGCCGCGGAACGACGCGGCGTGCAGCGGC
GGGTCGACCAGCTCCTTCAGCCTCCGCGCCACGCGCGCGCCGCAGCACCATGATCTCACC
CATGCCCATGTTAATAAATCTTTGTGGAACCGTGTCTGATTTGGTTGAGTCCATCTTTTT
CCACTTATGATCTCCAGAACCATGACCCCGAAGCTATACACATCGGTTTTGACTGAGAAA
TACCTT

consensusID : consensus_3730#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 589
fasta sequence

                              [CAAAAGGATTTCATTTCGTATCAGCATTTCACCTGACGGCATTAGTTTACACCAGTGAAAATGAGTGAAAACCCACCAAAATGTTTCCATATATCAAGATTTGATCATTCCTGAACCTCTTCAGCTATTCAGTTCAGTGCTCTTGTGTTCGTCTGAAAAACTCTGAACTGTTTTCAGTTCATGAATACTACAAATTGCTCTCTTCCAATGATGAACAATCCATCAATCAGCTGCTCGTCTCGCCGCCGTGGATCGAGCTCGCCCTCGCCGCGGTGAATCGAGACCGGCCGGGCAGCGGCGGCGTGGCCTTCCCCCTGGGGCGCAGCATGTGGACAACCTCCGGCATGGCGGGTCGCCGCTTGGGGCTCTCCTGGATGCAGAGCAGCGCCGCGCGGGCGCACCGCCGCATCTCCCGCTGCTGCGACAGCGCGCGCCGCCTCGCCGGGAGCGAGAGGCAGCGCGGCAGCGCCCCGCCGCGGAACGACGCGGCGTGCAGCGGCGGGTCGACCAGCTCCTTCAGCCTCCGCGCCACGCGCGCGCCGCAGCACCATGATCTCACCCATGCCTGATACATGTAAGTTCAGACTTC]

[-] EMBL AK107783             [CAAAAGGATTTCATTTCGTATCAGCATTTCACCTGACGGCATTAGTTTACACCAGTGAAAATGAGTGAAAACCCACCAAAATGTTTCCATATATCAAGATTTGATCATTCCTGAACCTCTTCAGCTATTCAGTTCAGTGCTCTTGTGTTCGTCTGAAAAACTCTGAACTGTTTTCAGTTCATGAATACTACAAATTGCTCTCTTCCAATGATGAACAATCCATCAATCAGCTGCTCGTCTCGCCGCCGTGGATCGAGCTCGCCCTCGCCGCGGTGAATCGAGACCGGCCGGGCAGCGGCGGCGTGGCCTTCCCCCTGGGGCGCAGCATGTGGACAACCTCCGGCATGGCGGGTCGCCGCTTGGGGCTCTCCTGGATGCAGAGCAGCGCCGCGCGGGCGCACCGCCGCATCTCCCGCTGCTGCGACAGCGCGCGCCGCCTCGCCGGGAGCGAGAGGCAGCGCGGCAGCGCCCCGCCGCGGAACGACGCGGCGTGCAGCGGCGGGTCGACCAGCTCCTTCAGCCTCCGCGCCACGCGCGCGCCGCAGCACCATGATCTCACCCATGCCTGATACATGTAAGTTCAGACTTC]




>consensus_3730#1
CAAAAGGATTTCATTTCGTATCAGCATTTCACCTGACGGCATTAGTTTACACCAGTGAAA
ATGAGTGAAAACCCACCAAAATGTTTCCATATATCAAGATTTGATCATTCCTGAACCTCT
TCAGCTATTCAGTTCAGTGCTCTTGTGTTCGTCTGAAAAACTCTGAACTGTTTTCAGTTC
ATGAATACTACAAATTGCTCTCTTCCAATGATGAACAATCCATCAATCAGCTGCTCGTCT
CGCCGCCGTGGATCGAGCTCGCCCTCGCCGCGGTGAATCGAGACCGGCCGGGCAGCGGCG
GCGTGGCCTTCCCCCTGGGGCGCAGCATGTGGACAACCTCCGGCATGGCGGGTCGCCGCT
TGGGGCTCTCCTGGATGCAGAGCAGCGCCGCGCGGGCGCACCGCCGCATCTCCCGCTGCT
GCGACAGCGCGCGCCGCCTCGCCGGGAGCGAGAGGCAGCGCGGCAGCGCCCCGCCGCGGA
ACGACGCGGCGTGCAGCGGCGGGTCGACCAGCTCCTTCAGCCTCCGCGCCACGCGCGCGC
CGCAGCACCATGATCTCACCCATGCCTGATACATGTAAGTTCAGACTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3730#0      TCTCTTGTTGCAGATCAGGATTTTAAGTCTCTTGTTGTACTTGAAACGTTTGCAATGTGC 60
consensus_3730#1      ------------------------------------------------------------
                                                                                  

consensus_3730#0      AAATCTTTACATGGTAAAAAGGAATTCATTACTGCAACTACAAAAGGATTTCATTTCGTA 120
consensus_3730#1      ----------------------------------------CAAAAGGATTTCATTTCGTA 20
                                                              ********************

consensus_3730#0      TCAGCATTTCACCTGACGGCATTAGTTTACACCAGTGAAAATGAGTGAAAACCCACCAAA 180
consensus_3730#1      TCAGCATTTCACCTGACGGCATTAGTTTACACCAGTGAAAATGAGTGAAAACCCACCAAA 80
                      ************************************************************

consensus_3730#0      ATGTTTCCATATATCAGGATTTGATCATTCCTGAACCTCTTCAGCTATTCAGTTCAGTGC 240
consensus_3730#1      ATGTTTCCATATATCAAGATTTGATCATTCCTGAACCTCTTCAGCTATTCAGTTCAGTGC 140
                      **************** *******************************************

consensus_3730#0      TCTTGTGTTCGTCTGAAAAACTCTGAACTGTTTTCAGTTCATGAATACTACAAATTGCTC 300
consensus_3730#1      TCTTGTGTTCGTCTGAAAAACTCTGAACTGTTTTCAGTTCATGAATACTACAAATTGCTC 200
                      ************************************************************

consensus_3730#0      TCTTCCAATGATGAACAATCCATCAATCAGCTGCTCGTCTCGCCGCCGTGGATCGAGCTC 360
consensus_3730#1      TCTTCCAATGATGAACAATCCATCAATCAGCTGCTCGTCTCGCCGCCGTGGATCGAGCTC 260
                      ************************************************************

consensus_3730#0      GCCCTCGCCGCGGTGAATCGAGACCGGCCGGGCAGCGGCGGCGTGGCCTTCCCCCTGGGG 420
consensus_3730#1      GCCCTCGCCGCGGTGAATCGAGACCGGCCGGGCAGCGGCGGCGTGGCCTTCCCCCTGGGG 320
                      ************************************************************

consensus_3730#0      CGCAGCATGTGGACAACCTCCGGCATGGCGGGTCGCCGCTTGGGGCTCTCCTGGATGCAG 480
consensus_3730#1      CGCAGCATGTGGACAACCTCCGGCATGGCGGGTCGCCGCTTGGGGCTCTCCTGGATGCAG 380
                      ************************************************************

consensus_3730#0      AGCAGCGCCGCGCGGGCGCACCGCCGCATCTCCCGCTGCTGCGACAGCGCGCGCCGCCTC 540
consensus_3730#1      AGCAGCGCCGCGCGGGCGCACCGCCGCATCTCCCGCTGCTGCGACAGCGCGCGCCGCCTC 440
                      ************************************************************

consensus_3730#0      GCCGGGAGCGAGAGGCAGCGCGGCAGCGCCCCGCCGCGGAACGACGCGGCGTGCAGCGGC 600
consensus_3730#1      GCCGGGAGCGAGAGGCAGCGCGGCAGCGCCCCGCCGCGGAACGACGCGGCGTGCAGCGGC 500
                      ************************************************************

consensus_3730#0      GGGTCGACCAGCTCCTTCAGCCTCCGCGCCACGCGCGCGCCGCAGCACCATGATCTCACC 660
consensus_3730#1      GGGTCGACCAGCTCCTTCAGCCTCCGCGCCACGCGCGCGCCGCAGCACCATGATCTCACC 560
                      ************************************************************

consensus_3730#0      CATGCCCATGTTAATAAATCTTTGTGGAACCGTGTCTGATTTGGTTGAGTCCATCTTTTT 720
consensus_3730#1      CATGCC-----TGATACATGTAAGTTCAGACTTC-------------------------- 589
                      ******     * *** ** *  **  *  * *                           

consensus_3730#0      CCACTTATGATCTCCAGAACCATGACCCCGAAGCTATACACATCGGTTTTGACTGAGAAA 780
consensus_3730#1      ------------------------------------------------------------
                                                                                  

consensus_3730#0      TACCTT 786
consensus_3730#1      ------