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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3739#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2543 fasta sequence
[TTCTACCAAACCAAATCAAATTCTCGCTTCTTCTTGGACGCCGGGAACACCAAACCAACGAACAAACGGCGAATCCAAGTTTCGATTCGATTCGGTTCGGTTCCAACTCCAATCCGCGGCGCCGGCGGCAACAATGGCGGCGCTCCACGCACTCCAGCGATCTCAGTGGAGAATGAGGACTGAGGAGTAGTGATCTCGAATCGTGCAGAGCAGGGCTCCGCCTCCAGGGCAGAGGCATGTCTCTCGCCTGCGGGCTCCCGCTGCTGGAATGCGTCTACTGCCTGGGATGCGCGCGGTGGGCGTGGAAGCGGTGCCTCCACTCCGGCGACCGCGACAGCGCCACCTGGGGCCTCGCCTCCGCCGATGACTTCGCCCCCGTCCCGCGCCTCTGCCGCCTCATCATGGCCAACTACGACCACCACCCCTGCCACCCCCTCGACGCCCGCTGCGTCGTCCGCCGCCGCACCTACGCCGACACCCGCGGCCGCGTCACCCCCTACCTCCTCTACCTCGACCACCCCAACTCCGACATCGTCCTCGCCCTCCGCGGCCTCAACCTCGCCAGGGAGACCGACTACGCCCTCCTCCTCGACAACCGCCTCGGCAAGCGCCGCTTCCATGGCGGCTACGTCCACAACGGCCTCCTCCGCGCCGCCGCCTGGGTTCTCGACGCCGAGTGCGACCTCCTCCGGGACCTCCTCGCCGACCACCCCGACTACACCCTCACCTTCACTGGCCACTCCCTCGGCGCCGGCATCGCCGCCATGCTCACCGTCGTCGTCCTCCTCAACCTCGACAAGCTCGGCACCAATCTCCACAGGAGCCGCATCAGGTGCTACGCCATGGCGCCTGCCAGATGTATGTCGCTCAATCTGGCTATCAGATATGCCGACGTTATCAACTCTGTTGTCCTGCAAGTGAGCCCAGCGTTGTTCCCCCTTTTCAATTCCTGCTATACTTGCTTATTCCTCCTCACCATTCCTACCACATCACACTTGATCTGCATTCTTCATCTTCTGTCTCAACAAAATAATTATAGCTCCTTATTGACAGGATGATTTCTTGCCTCGGACAGCCACTCCTTTAGAAGACATTTTCAAGTCAATCCTATGGTACATATATGCCCATGCCCACCAATCTTTTACAAAAGTAGCGTTACACAATTCTACACTGGTCATACAAGGCAGCACTATCACATATATGATTCCAGTCACATTTAATTTTCCTTTTACAGTAAATACCATCACTACCTTTCTGCTTGTTAATTCCAATTGTCGAGATGGCTTCCATAGGCAGATCGGTAACATATGTGCTCATCCATTGTTTCATTTGCTAACTGATGTAGTTATTACTTAAGCTGGCTTGTGTGGCTAATAATTGCCTGAAACTTATGCGATTGCACAATATTTCTTGTTGGATGTCTATGTAAGAGCTTTGTAGGGACCTAAAGAAGTTGATGCCGTTTACTTGTGATTTTCAAAGTTATAGAAAGTTTCTCTGTTTATACTTCAGTAATCACAGCTAGTATCTGACTTGACCCAAGCAATTAGCAGCTAATAGCTGATATGTATAGTATGACTTGAGGAAGGAAATAGAGGATCTGATGGACAGTGCAAATGCACCAGTGAGTTAGAAAAGTGGAGATAGAAAATGACATTTAGTTTGGGATGGGGTGGTTGATCCGATTTTTTCTGTTTCTCTGCTTGTAGCAATGCTATGCAGTAAGTTGGATGTAGCTTCATTTCTCCTTCCAGCTTATTGGGTTCAAACAAGTTTAAACTTGGATCATCTCCTCTTTTTGGGCAGCTTGCCCTGCCTGCTGTGTATCAGATGTTTGAGGGACACTTGCATACCTGAAGATGCTATGTTAAAAGATCCAAGGAGGCTTTATGCACCAGGTCGGATATATCACATTGTAGAGAGAAAAATGTTCAGGTGTGGAAGATACCCCCCAGTGGTGAAAACAGCTGTGCCTGTGGATGGTAGATTTGAGCATATAGTTCTTTCCTGCAATGCCACAATGGACCATGCCATTATTTGGATCGAGAGGGAAGCACAAAAGGCGTTGGATTTGATGCTTGAGAAGGAGAAGGCAATGGAGGTGCCATCGGAGCAGAGGATGGAGAGGAACGAGAGCCTGCAGAGGGAGCACGTAGAGGAGCACAAGGCAGCTCTGCGCAGGGCTGTGACGCTCTCGGTGCCGGACGCTCGGTCGCCGTCGGCTTACGGCACCTTCGGCGAGCAGCCGGAGAGAAGCGAGAGCTTCCCGCCGGTGTCAGCGATGGCCAGGCAGCGTATGAGCTGGAACGACCTCATCGAGCGGGTCTTCGACAGGGACGAGTCAGGCCACATTGTGCTGCGCAGCTCACCTTCTCCCTAGCTGTGCCTGTACATTCCATTCCATCCTCTTTCTTCTTCCTTTCCTTACCCTGGTATGCACCTTTTCATCATCTCTTTTTATTTTTTTATGTATATGCAACTTCAACTTCTGCTGTTATTTTTTCTTCCTTATTATTCATTCATGGTATCTACCGACGCATTTT]
[+] EMBL AK069587 [TTCTACCAAACCAAATCAAATTCTCGCTTCTTCTTGGACGCCGGGAACACCAAACCAACGAACAAACGGCGAATCCAAGTTTCGATTCGATTCGGTTCGGTTCCAACTCCAATCCGCGGCGCCGGCGGCAACAATGGCGGCGCTCCACGCACTCCAGCGATCTCAGTGGAGAATGAGGACTGAGGAGTAGTGATCTCGAATCGTGCAGAGCAGGGCTCCGCCTCCAGGGCAGAGGCATGTCTCTCGCCTGCGGGCTCCCGCTGCTGGAATGCGTCTACTGCCTGGGATGCGCGCGGTGGGCGTGGAAGCGGTGCCTCCACTCCGGCGACCGCGACAGCGCCACCTGGGGCCTCGCCTCCGCCGATGACTTCGCCCCCGTCCCGCGCCTCTGCCGCCTCATCATGGCCAACTACGACCACCACCCCTGCCACCCCCTCGACGCCCGCTGCGTCGTCCGCCGCCGCACCTACGCCGACACCCGCGGCCGCGTCACCCCCTACCTCCTCTACCTCGACCACCCCAACTCCGACATCGTCCTCGCCCTCCGCGGCCTCAACCTCGCCAGGGAGACCGACTACGCCCTCCTCCTCGACAACCGCCTCGGCAAGCGCCGCTTCCATGGCGGCTACGTCCACAACGGCCTCCTCCGCGCCGCCGCCTGGGTTCTCGACGCCGAGTGCGACCTCCTCCGGGACCTCCTCGCCGACCACCCCGACTACACCCTCACCTTCACTGGCCACTCCCTCGGCGCCGGCATCGCCGCCATGCTCACCGTCGTCGTCCTCCTCAACCTCGACAAGCTCGGCACCAATCTCCACAGGAGCCGCATCAGGTGCTACGCCATGGCGCCTGCCAGATGTATGTCGCTCAATCTGGCTATCAGATATGCCGACGTTATCAACTCTGTTGTCCTGCAAGTGAGCCCAGCGTTGTTCCCCCTTTTCAATTCCTGCTATACTTGCTTATTCCTCCTCACCATTCCTACCACATCACACTTGATCTGCATTCTTCATCTTCTGTCTCAACAAAATAATTATAGCTCCTTATTGACAGGATGATTTCTTGCCTCGGACAGCCACTCCTTTAGAAGACATTTTCAAGTCAATCCTATGGTACATATATGCCCATGCCCACCAATCTTTTACAAAAGTAGCGTTACACAATTCTACACTGGTCATACAAGGCAGCACTATCACATATATGATTCCAGTCACATTTAATTTTCCTTTTACAGTAAATACCATCACTACCTTTCTGCTTGTTAATTCCAATTGTCGAGATGGCTTCCATAGGCAGATCGGTAACATATGTGCTCATCCATTGTTTCATTTGCTAACTGATGTAGTTATTACTTAAGCTGGCTTGTGTGGCTAATAATTGCCTGAAACTTATGCGATTGCACAATATTTCTTGTTGGATGTCTATGTAAGAGCTTTGTAGGGACCTAAAGAAGTTGATGCCGTTTACTTGTGATTTTCAAAGTTATAGAAAGTTTCTCTGTTTATACTTCAGTAATCACAGCTAGTATCTGACTTGACCCAAGCAATTAGCAGCTAATAGCTGATATGTATAGTATGACTTGAGGAAGGAAATAGAGGATCTGATGGACAGTGCAAATGCACCAGTGAGTTAGAAAAGTGGAGATAGAAAATGACATTTAGTTTGGGATGGGGTGGTTGATCCGATTTTTTCTGTTTCTCTGCTTGTAGCAATGCTATGCAGTAAGTTGGATGTAGCTTCATTTCTCCTTCCAGCTTATTGGGTTCAAACAAGTTTAAACTTGGATCATCTCCTCTTTTTGGGCAGCTTGCCCTGCCTGCTGTGTATCAGATGTTTGAGGGACACTTGCATACCTGAAGATGCTATGTTAAAAGATCCAAGGAGGCTTTATGCACCAGGTCGGATATATCACATTGTAGAGAGAAAAATGTTCAGGTGTGGAAGATACCCCCCAGTGGTGAAAACAGCTGTGCCTGTGGATGGTAGATTTGAGCATATAGTTCTTTCCTGCAATGCCACAATGGACCATGCCATTATTTGGATCGAGAGGGAAGCACAAAAGGCGTTGGATTTGATGCTTGAGAAGGAGAAGGCAATGGAGGTGCCATCGGAGCAGAGGATGGAGAGGAACGAGAGCCTGCAGAGGGAGCACGTAGAGGAGCACAAGGCAGCTCTGCGCAGGGCTGTGACGCTCTCGGTGCCGGACGCTCGGTCGCCGTCGGCTTACGGCACCTTCGGCGAGCAGCCGGAGAGAAGCGAGAGCTTCCCGCCGGTGTCAGCGATGGCCAGGCAGCGTATGAGCTGGAACGACCTCATCGAGCGGGTCTTCGACAGGGACGAGTCAGGCCACATTGTGCTGCGCAGCTCACCTTCTCCCTAGCTGTGCCTGTACATTCCATTCCATCCTCTTTCTTCTTCCTTTCCTTACCCTGGTATGCACCTTTTCATCATCTCTTTTTATTTTTTTATGTATATGCAACTTCAACTTCTGCTGTTATTTTTTCTTCCTTATTATTCATTCATGGTATCTACCGACGCATTTT]
consensusID : consensus_3739#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence
[TTTTTCTCCTTTTTCTTTTCGCTTTTCTCAGCTTCCACGCCATCTCCATTGTGCTGCGCAGCTCACCTTCTCCCTAGCTGTGCCTGTACATTCCATTCCATCCTCTTTCTTCTTCCTTTCCTTACCCTGGTATGCACCTTTTCATCATCTCTTTTTATTTTTTTATGTATATGCAACTTCAACTTCTGCTGTTATTTTTTCTTCCTTATTATTCATTCATGGTATCTACCGACGCATTTTTTGCTGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AU181791 [TTTTTCTCCTTTTTCTTTTCGCTTTTCTCAGCTTCCACGCCATCTCCATTGTGCTGCGCAGCTCACCTTCTCCCTAGCTGTGCCTGTACATTCCATTCCATCCTCTTTCTTCTTCCTTTCCTTACCCTGGTATGCACCTTTTCATCATCTCTTTTTATTTTTTTATGTATATGCAACTTCAACTTCTGCTGTTATTTTTTCTTCCTTATTATTCATTCATGGTATCTACCGACGCATTTTTTGCTGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3739#0 TTCTACCAAACCAAATCAAATTCTCGCTTCTTCTTGGACGCCGGGAACACCAAACCAACG 60
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 AACAAACGGCGAATCCAAGTTTCGATTCGATTCGGTTCGGTTCCAACTCCAATCCGCGGC 120
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 GCCGGCGGCAACAATGGCGGCGCTCCACGCACTCCAGCGATCTCAGTGGAGAATGAGGAC 180
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 TGAGGAGTAGTGATCTCGAATCGTGCAGAGCAGGGCTCCGCCTCCAGGGCAGAGGCATGT 240
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 CTCTCGCCTGCGGGCTCCCGCTGCTGGAATGCGTCTACTGCCTGGGATGCGCGCGGTGGG 300
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 CGTGGAAGCGGTGCCTCCACTCCGGCGACCGCGACAGCGCCACCTGGGGCCTCGCCTCCG 360
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 CCGATGACTTCGCCCCCGTCCCGCGCCTCTGCCGCCTCATCATGGCCAACTACGACCACC 420
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 ACCCCTGCCACCCCCTCGACGCCCGCTGCGTCGTCCGCCGCCGCACCTACGCCGACACCC 480
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 GCGGCCGCGTCACCCCCTACCTCCTCTACCTCGACCACCCCAACTCCGACATCGTCCTCG 540
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 CCCTCCGCGGCCTCAACCTCGCCAGGGAGACCGACTACGCCCTCCTCCTCGACAACCGCC 600
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 TCGGCAAGCGCCGCTTCCATGGCGGCTACGTCCACAACGGCCTCCTCCGCGCCGCCGCCT 660
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 GGGTTCTCGACGCCGAGTGCGACCTCCTCCGGGACCTCCTCGCCGACCACCCCGACTACA 720
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 CCCTCACCTTCACTGGCCACTCCCTCGGCGCCGGCATCGCCGCCATGCTCACCGTCGTCG 780
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 TCCTCCTCAACCTCGACAAGCTCGGCACCAATCTCCACAGGAGCCGCATCAGGTGCTACG 840
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 CCATGGCGCCTGCCAGATGTATGTCGCTCAATCTGGCTATCAGATATGCCGACGTTATCA 900
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 ACTCTGTTGTCCTGCAAGTGAGCCCAGCGTTGTTCCCCCTTTTCAATTCCTGCTATACTT 960
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 GCTTATTCCTCCTCACCATTCCTACCACATCACACTTGATCTGCATTCTTCATCTTCTGT 1020
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 CTCAACAAAATAATTATAGCTCCTTATTGACAGGATGATTTCTTGCCTCGGACAGCCACT 1080
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 CCTTTAGAAGACATTTTCAAGTCAATCCTATGGTACATATATGCCCATGCCCACCAATCT 1140
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 TTTACAAAAGTAGCGTTACACAATTCTACACTGGTCATACAAGGCAGCACTATCACATAT 1200
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 ATGATTCCAGTCACATTTAATTTTCCTTTTACAGTAAATACCATCACTACCTTTCTGCTT 1260
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 GTTAATTCCAATTGTCGAGATGGCTTCCATAGGCAGATCGGTAACATATGTGCTCATCCA 1320
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 TTGTTTCATTTGCTAACTGATGTAGTTATTACTTAAGCTGGCTTGTGTGGCTAATAATTG 1380
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 CCTGAAACTTATGCGATTGCACAATATTTCTTGTTGGATGTCTATGTAAGAGCTTTGTAG 1440
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 GGACCTAAAGAAGTTGATGCCGTTTACTTGTGATTTTCAAAGTTATAGAAAGTTTCTCTG 1500
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 TTTATACTTCAGTAATCACAGCTAGTATCTGACTTGACCCAAGCAATTAGCAGCTAATAG 1560
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 CTGATATGTATAGTATGACTTGAGGAAGGAAATAGAGGATCTGATGGACAGTGCAAATGC 1620
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 ACCAGTGAGTTAGAAAAGTGGAGATAGAAAATGACATTTAGTTTGGGATGGGGTGGTTGA 1680
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 TCCGATTTTTTCTGTTTCTCTGCTTGTAGCAATGCTATGCAGTAAGTTGGATGTAGCTTC 1740
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 ATTTCTCCTTCCAGCTTATTGGGTTCAAACAAGTTTAAACTTGGATCATCTCCTCTTTTT 1800
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 GGGCAGCTTGCCCTGCCTGCTGTGTATCAGATGTTTGAGGGACACTTGCATACCTGAAGA 1860
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 TGCTATGTTAAAAGATCCAAGGAGGCTTTATGCACCAGGTCGGATATATCACATTGTAGA 1920
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 GAGAAAAATGTTCAGGTGTGGAAGATACCCCCCAGTGGTGAAAACAGCTGTGCCTGTGGA 1980
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 TGGTAGATTTGAGCATATAGTTCTTTCCTGCAATGCCACAATGGACCATGCCATTATTTG 2040
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 GATCGAGAGGGAAGCACAAAAGGCGTTGGATTTGATGCTTGAGAAGGAGAAGGCAATGGA 2100
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 GGTGCCATCGGAGCAGAGGATGGAGAGGAACGAGAGCCTGCAGAGGGAGCACGTAGAGGA 2160
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 GCACAAGGCAGCTCTGCGCAGGGCTGTGACGCTCTCGGTGCCGGACGCTCGGTCGCCGTC 2220
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 GGCTTACGGCACCTTCGGCGAGCAGCCGGAGAGAAGCGAGAGCTTCCCGCCGGTGTCAGC 2280
consensus_3739#1 ------------------------------------------------------------
consensus_3739#0 GATGGCCAGGCAGCGTATGAGCTGGAACGACCTCATCGAGCGGGTCTTCGACAGGGACGA 2340
consensus_3739#1 ----------------------TTTTTCTCCTTTTTCTTTTCGCTTTTCT-CAGCTTCCA 37
* * * * ** * * *** *** * *
consensus_3739#0 GTCAGGCCACATTGTGCTGCGCAGCTCACCTTCTCCCTAGCTGTGCCTGTACATTCCATT 2400
consensus_3739#1 CGCCATCTCCATTGTGCTGCGCAGCTCACCTTCTCCCTAGCTGTGCCTGTACATTCCATT 97
* * ***************************************************
consensus_3739#0 CCATCCTCTTTCTTCTTCCTTTCCTTACCCTGGTATGCACCTTTTCATCATCTCTTTTTA 2460
consensus_3739#1 CCATCCTCTTTCTTCTTCCTTTCCTTACCCTGGTATGCACCTTTTCATCATCTCTTTTTA 157
************************************************************
consensus_3739#0 TTTTTTTATGTATATGCAACTTCAACTTCTGCTGTTATTTTTTCTTCCTTATTATTCATT 2520
consensus_3739#1 TTTTTTTATGTATATGCAACTTCAACTTCTGCTGTTATTTTTTCTTCCTTATTATTCATT 217
************************************************************
consensus_3739#0 CATGGTATCTACCGACGCATTTT------------------------------------- 2543
consensus_3739#1 CATGGTATCTACCGACGCATTTTTTGCTGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 277
***********************
consensus_3739#0 ----------------------------------------------------
consensus_3739#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 329
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||