Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3741 cluster # 3741       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3741#0 length = 2537 sequences # 2  

consensusID : consensus_3741#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2537
fasta sequence
                              [ACCACAGTTTGAATGGGATGGTCGAAAATGGATGCGCTGCATGACAAAGAAAAAGGATACAAAGGCAAAGAAGCTTGTCACTAGAGGGTCTCAATTAACCTCTCGAAAAAAGCCAATTCCTGCTGACTTGGCATCATGTAATGACAGTGATGAAATCAGAGATAAACCAAGCTCTGATAAATTGTTGGAGACTGCAGATGTAGTACCACGACCTAAAGAAACTATGAAGCAACAAAATGCAGTGCTGGCATTAGCATCTCAGATAAAACTTCCTTTACAGTTATCAATGACAGGATCTGGTCATTTGAAATATACTTCTTCACTTATTCTAGGTAGTCCTATTGAACTACCATCTTCTCAGATGGATGTCATGCCCTCTGTGCCGCAAACTGCAGGGCTGCAAGCTTCACTGTTTGGGGTGTTTGGGAAACTAAGACCTATCCCACAGGATCCACTTTTAGTAATGCAATCACCTCATCCAGATCTCAGCAGAAATGAAGGATCAAAGGCATCGACTGATCAAGAAAAGCAATCAACTGATGAAGGCTGTTGTCTGATTTCAAGTGCTGCAAATAGCTTCAACTTTGTGTCATTTGCTGGAATTGATGTGTCCAGAAAAAGAAAAGAATGTGTTTCTTTTCAAGCACCTGAGGAACTAGGGATGAAGAAAAACAGAGTTGACGAAACAATTGAGGGAACCCACGACATTGCAGCAATCTCTGAAGAACAGACCAAGCTGATTTTTAGAGATGAACATAATGAACTGCCTACCAATGTTATTGCTGGTCCAGCAATTCCTTCAGAAAAAAATCAGCCAACTCCACTTGAAGACAATAAAGGTCCACGAGACAGTAGCATTGTTGATAAAATCAGCCAAAGTGGTATAAACGATGTTCGCCAAGATGAGAACCTTGTACTGCATGCAACTTCAACATTAGATAATTCTGGTGATGTGAATTTGTTATCTTCTGTTTCTTCAACTGAAAACCAGAAGAAAATATCCAAATCTGAAGGGTGTGAAATAAGTATGGATGAAGACTCTGGTGAAGAATTTTGTCGGAGCATTTTGGTTATGCCTGATGATACTAGAATGGATCAATTTCCTTCAGCAAAGAGTGGTCAAGCTACCAGGCATGATGACCTCATTTGCAAGGAAAACTTGGGAGCAATAGTTGAGTGTGTGACGAACACTCCAACAGAGAATTTGTCTTTTTTGTCTCCAGCTATGTTTGATGATGGGGTGCCGAACCAGTCACCAGTCAGTGAGAATTGTCAGGATAACAAACAAGATGGCATGGACAATGTGGATCATGGAGCAAATGTGGTGGAGTTAGCCAGTATTATTCCTGAAACTCAGCATGCCAGTGTTGGTGGTCCACTGTCAACCATATCTTTAGCTGCACTCGAGGGTAAAACAGTCCTTTCACATAGTTTAACGTGGGAGTCTGCACTTAATGAACAATCTGGAGTTTCACAACAGTATCACAGCTCAGCCATGGTAGAGTCACCAGAATGTGTTGCTGAAAGTAGCCAGTCCATCGATGATTCGACAATAACTCAGTTATGTTCTTTTGATATGAGCCAATGTATTGATGCTGAACTTGGTAACAGCTTGATCGTTTCAAACAACGCTCAGGATACACCAATATCCAAGTATGTAGCAAGAACACATAACTCTTCCTGCCCCTTGATGCAGAAATTTCTTCATGTGCATGAGAATATTATGGTTGATCAGCCATCAGAATCCTTGGCTATTATTGAACTTCCGTTTGTGAAGACCTCCCCGATGTGGGCACAAATTGAGGCAATGGAAGTATTTAGTAAAGTGCCACAACGACCAAATTTTCATCAGTTACAGCAGCATCCTCCGGAGTTTCGTGAAGGGATAGCATTGGGTTTGATGTACTCTTTCACCAATTTAGCAGAAAGCATAAACATGCTGAATGTCCATGACGATAATGCAGTATTTGAACATAAGATGAGGTGCATTTCTGTGTTGGAAGCAGACGGCTTCGATGTCAGGCACCTACGATCTCGTTTGGAAACTCTGCTCAGTTTAAAAAACAGCTGGTCCAAAATACAGGATATGATGAAACGTTCGGAGAAGAAGATTGCTCAAGAAGAAATCGATGATCAACAACGCTGTGCAGAAATTAGTGTGCTAAGTATGGTTGTCCGCCAGCTTGAACAACACGCCCATCTCTTCCGTTGCATAAAGAACCGTGCTATTTCACAGCAGATGAGCCATGCCATGGAGAATTCAAGACTCAAAGTAGAAGCAAGCCAACTTAAGCAATCATCTATGTCTACCGAGCAGCGCTTCAGTAGTGTCGTCGCTGCGCCATGGTAAGGTTTGTGCAAACTAATTGGTATGCTTGCGTATTATTTAGTTACTGATGGTATGTGAATATTGCTAGATGTTGTGAGTTACTAATGCTAGTGCTGCTGAATCTCTTTAGTTTGTGTGATGGTTTCTTTTGGTATGAGGAGAGCACCCAACGTATGTAATGGGTCGTTGTTGCCCTTTATGCAAGACA]

[+] EMBL AK064557             [ACCACAGTTTGAATGGGATGGTCGAAAATGGATGCGCTGCATGACAAAGAAAAAGGATACAAAGGCAAAGAAGCTTGTCACTAGAGGGTCTCAATTAACCTCTCGAAAAAAGCCAATTCCTGCTGACTTGGCATCATGTAATGACAGTGATGAAATCAGAGATAAACCAAGCTCTGATAAATTGTTGGAGACTGCAGATGTAGTACCACGACCTAAAGAAACTATGAAGCAACAAAATGCAGTGCTGGCATTAGCATCTCAGATAAAACTTCCTTTACAGTTATCAATGACAGGATCTGGTCATTTGAAATATACTTCTTCACTTATTCTAGGTAGTCCTATTGAACTACCATCTTCTCAGATGGATGTCATGCCCTCTGTGCCGCAAACTGCAGGGCTGCAAGCTTCACTGTTTGGGGTGTTTGGGAAACTAAGACCTATCCCACAGGATCCACTTTTAGTAATGCAATCACCTCATCCAGATCTCAGCAGAAATGAAGGATCAAAGGCATCGACTGATCAAGAAAAGCAATCAACTGATGAAGGCTGTTGTCTGATTTCAAGTGCTGCAAATAGCTTCAACTTTGTGTCATTTGCTGGAATTGATGTGTCCAGAAAAAGAAAAGAATGTGTTTCTTTTCAAGCACCTGAGGAACTAGGGATGAAGAAAAACAGAGTTGACGAAACAATTGAGGGAACCCACGACATTGCAGCAATCTCTGAAGAACAGACCAAGCTGATTTTTAGAGATGAACATAATGAACTGCCTACCAATGTTATTGCTGGTCCAGCAATTCCTTCAGAAAAAAATCAGCCAACTCCACTTGAAGACAATAAAGGTCCACGAGACAGTAGCATTGTTGATAAAATCAGCCAAAGTGGTATAAACGATGTTCGCCAAGATGAGAACCTTGTACTGCATGCAACTTCAACATTAGATAATTCTGGTGATGTGAATTTGTTATCTTCTGTTTCTTCAACTGAAAACCAGAAGAAAATATCCAAATCTGAAGGGTGTGAAATAAGTATGGATGAAGACTCTGGTGAAGAATTTTGTCGGAGCATTTTGGTTATGCCTGATGATACTAGAATGGATCAATTTCCTTCAGCAAAGAGTGGTCAAGCTACCAGGCATGATGACCTCATTTGCAAGGAAAACTTGGGAGCAATAGTTGAGTGTGTGACGAACACTCCAACAGAGAATTTGTCTTTTTTGTCTCCAGCTATGTTTGATGATGGGGTGCCGAACCAGTCACCAGTCAGTGAGAATTGTCAGGATAACAAACAAGATGGCATGGACAATGTGGATCATGGAGCAAATGTGGTGGAGTTAGCCAGTATTATTCCTGAAACTCAGCATGCCAGTGTTGGTGGTCCACTGTCAACCATATCTTTAGCTGCACTCGAGGGTAAAACAGTCCTTTCACATAGTTTAACGTGGGAGTCTGCACTTAATGAACAATCTGGAGTTTCACAACAGTATCACAGCTCAGCCATGGTAGAGTCACCAGAATGTGTTGCTGAAAGTAGCCAGTCCATCGATGATTCGACAATAACTCAGTTATGTTCTTTTGATATGAGCCAATGTATTGATGCTGAACTTGGTAACAGCTTGATCGTTTCAAACAACGCTCAGGATACACCAATATCCAAGTATGTAGCAAGAACACATAACTCTTCCTGCCCCTTGATGCAGAAATTTCTTCATGTGCATGAGAATATTATGGTTGATCAGCCATCAGAATCCTTGGCTATTATTGAACTTCCGTTTGTGAAGACCTCCCCGATGTGGGCACAAATTGAGGCAATGGAAGTATTTAGTAAAGTGCCACAACGACCAAATTTTCATCAGTTACAGCAGCATCCTCCGGAGTTTCGTGAAGGGATAGCATTGGGTTTGATGTACTCTTTCACCAATTTAGCAGAAAGCATAAACATGCTGAATGTCCATGACGATAATGCAGTATTTGAACATAAGATGAGGTGCATTTCTGTGTTGGAAGCAGACGGCTTCGATGTCAGGCACCTACGATCTCGTTTGGAAACTCTGCTCAGTTTAAAAAACAGCTGGTCCAAAATACAGGATATGATGAAACGTTCGGAGAAGAAGATTGCTCAAGAAGAAATCGATGATCAACAACGCTGTGCAGAAATTAGTGTGCTAAGTATGGTTGTCCGCCAGCTTGAACAACACGCCCATCTCTTCCGTTGCATAAAGAACCGTGCTATTTCACAGCAGATGAGCCATGCCATGGAGAATTCAAGACTCAAAGTAGAAGCAAGCCAACTTAAGCAATCATCTATGTCTACCGAGCAGCGCTTCAGTAGTGTCGTCGCTGCGCCATGGTAAGGTTTGTGCAAACTAATTGGTATGCTTGCGTATTATTTAGTTACTGATGGTATGTGAATATTGCTAGATGTTGTGAGTTACTAATGCTAGTGCTGCTGAATCTCTTTAGTTTGTGTGATGGTTTCTTTTGGTATGAGGAGAGCACCCAACGTATGTAATGGGTCGTTGTTGCCCTTTATGCAAGACA]
[+] EMBL CF303011             [                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACAGGATCCACTTTTAGTAATGCAATCACCTCATCCAGATCTCAGCAGAAATGAAGGATCAAAGGCATCGACTGATCAAGAAAAGCAATCAACTGATGAAGGCTGTTGTCTGATTTCAAGTGCTGCAAATAGCTTCAACTTTGTGTCATTTGCTGGAATTGATGTGTCCAGAAAAAGAAAAGAATGTGTTTCTTTTCAAGCACCTGAGGAACTAGGGATGAAGAAAAACAGAGTTGACGAAACAATTGAGGGAACCCACGACATTGCAGCAATCTCTGAAGAACAGACCAAGCTGATTTTTAGAGATGAACATAATGAACTGCCTACCAATGTTATTGCTGGTCCAGCAATTCCTTCAGAAAAAAATCAGCCAACTCCACTTGAAGACAATAAAGGTCCACGAGACAGTAGCATTGTTGATAAAATCAGCCAAAGTGGTATAAACGATGTTCGCCAAGATGAGAACCTTGTACTGCATGCAACTTCAACATTAGATAATTCTGGTGATGTGAATTTGTTATCTTCTGTTTCTTCAACTGAAAACCAGAAGAAAATATCCAAATCTGAAGGGTGTGAAATAAGTATGGATGAAGACTCTGGTGAAGAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]


>consensus_3741#0 ACCACAGTTTGAATGGGATGGTCGAAAATGGATGCGCTGCATGACAAAGAAAAAGGATAC AAAGGCAAAGAAGCTTGTCACTAGAGGGTCTCAATTAACCTCTCGAAAAAAGCCAATTCC TGCTGACTTGGCATCATGTAATGACAGTGATGAAATCAGAGATAAACCAAGCTCTGATAA ATTGTTGGAGACTGCAGATGTAGTACCACGACCTAAAGAAACTATGAAGCAACAAAATGC AGTGCTGGCATTAGCATCTCAGATAAAACTTCCTTTACAGTTATCAATGACAGGATCTGG TCATTTGAAATATACTTCTTCACTTATTCTAGGTAGTCCTATTGAACTACCATCTTCTCA GATGGATGTCATGCCCTCTGTGCCGCAAACTGCAGGGCTGCAAGCTTCACTGTTTGGGGT GTTTGGGAAACTAAGACCTATCCCACAGGATCCACTTTTAGTAATGCAATCACCTCATCC AGATCTCAGCAGAAATGAAGGATCAAAGGCATCGACTGATCAAGAAAAGCAATCAACTGA TGAAGGCTGTTGTCTGATTTCAAGTGCTGCAAATAGCTTCAACTTTGTGTCATTTGCTGG AATTGATGTGTCCAGAAAAAGAAAAGAATGTGTTTCTTTTCAAGCACCTGAGGAACTAGG GATGAAGAAAAACAGAGTTGACGAAACAATTGAGGGAACCCACGACATTGCAGCAATCTC TGAAGAACAGACCAAGCTGATTTTTAGAGATGAACATAATGAACTGCCTACCAATGTTAT TGCTGGTCCAGCAATTCCTTCAGAAAAAAATCAGCCAACTCCACTTGAAGACAATAAAGG TCCACGAGACAGTAGCATTGTTGATAAAATCAGCCAAAGTGGTATAAACGATGTTCGCCA AGATGAGAACCTTGTACTGCATGCAACTTCAACATTAGATAATTCTGGTGATGTGAATTT GTTATCTTCTGTTTCTTCAACTGAAAACCAGAAGAAAATATCCAAATCTGAAGGGTGTGA AATAAGTATGGATGAAGACTCTGGTGAAGAATTTTGTCGGAGCATTTTGGTTATGCCTGA TGATACTAGAATGGATCAATTTCCTTCAGCAAAGAGTGGTCAAGCTACCAGGCATGATGA CCTCATTTGCAAGGAAAACTTGGGAGCAATAGTTGAGTGTGTGACGAACACTCCAACAGA GAATTTGTCTTTTTTGTCTCCAGCTATGTTTGATGATGGGGTGCCGAACCAGTCACCAGT CAGTGAGAATTGTCAGGATAACAAACAAGATGGCATGGACAATGTGGATCATGGAGCAAA TGTGGTGGAGTTAGCCAGTATTATTCCTGAAACTCAGCATGCCAGTGTTGGTGGTCCACT GTCAACCATATCTTTAGCTGCACTCGAGGGTAAAACAGTCCTTTCACATAGTTTAACGTG GGAGTCTGCACTTAATGAACAATCTGGAGTTTCACAACAGTATCACAGCTCAGCCATGGT AGAGTCACCAGAATGTGTTGCTGAAAGTAGCCAGTCCATCGATGATTCGACAATAACTCA GTTATGTTCTTTTGATATGAGCCAATGTATTGATGCTGAACTTGGTAACAGCTTGATCGT TTCAAACAACGCTCAGGATACACCAATATCCAAGTATGTAGCAAGAACACATAACTCTTC CTGCCCCTTGATGCAGAAATTTCTTCATGTGCATGAGAATATTATGGTTGATCAGCCATC AGAATCCTTGGCTATTATTGAACTTCCGTTTGTGAAGACCTCCCCGATGTGGGCACAAAT TGAGGCAATGGAAGTATTTAGTAAAGTGCCACAACGACCAAATTTTCATCAGTTACAGCA GCATCCTCCGGAGTTTCGTGAAGGGATAGCATTGGGTTTGATGTACTCTTTCACCAATTT AGCAGAAAGCATAAACATGCTGAATGTCCATGACGATAATGCAGTATTTGAACATAAGAT GAGGTGCATTTCTGTGTTGGAAGCAGACGGCTTCGATGTCAGGCACCTACGATCTCGTTT GGAAACTCTGCTCAGTTTAAAAAACAGCTGGTCCAAAATACAGGATATGATGAAACGTTC GGAGAAGAAGATTGCTCAAGAAGAAATCGATGATCAACAACGCTGTGCAGAAATTAGTGT GCTAAGTATGGTTGTCCGCCAGCTTGAACAACACGCCCATCTCTTCCGTTGCATAAAGAA CCGTGCTATTTCACAGCAGATGAGCCATGCCATGGAGAATTCAAGACTCAAAGTAGAAGC AAGCCAACTTAAGCAATCATCTATGTCTACCGAGCAGCGCTTCAGTAGTGTCGTCGCTGC GCCATGGTAAGGTTTGTGCAAACTAATTGGTATGCTTGCGTATTATTTAGTTACTGATGG TATGTGAATATTGCTAGATGTTGTGAGTTACTAATGCTAGTGCTGCTGAATCTCTTTAGT TTGTGTGATGGTTTCTTTTGGTATGAGGAGAGCACCCAACGTATGTAATGGGTCGTTGTT GCCCTTTATGCAAGACA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)