These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3748#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1976 fasta sequence [CCCATCGGCCTTGTTGGTTTGAAATACAGAGTCCAGGTGCGAGCCAAGTCCCCTCTCTTCGCGACTGATTGCGTTTCCTTAAATATGCAAGGCAGGTAGAGGGCCGGGTGAGAAATTTTGAGATTTCGACCCACAGAGGGCGGAAAACCCTTGGATTTTAGATTCACTCAAGGCTTCGTCGCGTCATGGGTATTTTCAAGTTGAATCTGCTCCTAAAGCTGCAGCGGCAGCGGCAGCGCCGTCGTCGCCAAATCCAAGCCCGTAATGGATCAGTTTTGATTCATCCACGGGATAAAATAAACGCTCCAGCCTGTCAAAATAACACACACTCTTGGAGTGGCCAAGCGAAGTGTTCAGACCCAACGCTTCTGGAGGACGTCTCGTGTCATATACATTCCCTGATGTCTATGCGGGATGCTGCTCGTGTTGCCTGTGTGTCTCGGGCGTTTGCACGTTCCTGGAGATGCCTTCCCAACCTCGACTTCAGTGAGGGATCATTAGGAATAAATAGAAGTACATGCAAAAAAGATGAGAAACTGGGAGATTTGACCAGCAAAATTGATTGGATTCTGAAAAATCACTCAGGCATTGGCATAAAGAAACTCATCATTCAGGTTGGCAGTGTATACAGTCGGGACAGTAGTCATCTTGCTCATCTCGATAGTTGGCTTCAGTGTGCTGTTAAACCAGGGATTGAAGAGCTGATTGTTAATCTGTCATCAATGAATGCAAAATGCAATTTCCCATGTGAACTTTTATCTAGTGGAACTGGAGATTCACTTCGCTATATTTATCTTGCCTCTTGCAACTTCCATCCCACAGTAAGAATTGGTTGCTTGAAAAGCTTGACAAGACTACAGCTGTGTATGGTGAATATCACGGAAAACGAGCTAAGGTGCCTTCTTTCCATTTCATTGGGTTTGGAGCGGTTGGAACTCAGGCACTGCAGTACGTTAAAATGCTTGAAAGTACCATGCCTGCAGCGTCTCAGCTACCTAGATGTTATGACTTGCACCGGGCTGCAAGTTATAGAGAGCAAAGCTCCAAATCTCTCCAGTATTCGCTTTGAAGGTGACCTCTATGTACAATTGTCACTTGGTGAACCACTGCAAATTAAGCAATTGTACAGGTTATGTAATGATGCTGCCTTTTATGCTCGTACTGAGCTGCCATCCAGCATGCCAAATCTTGAAAGGCTTATTATACATTCTGACACTGAGATGGTCAATACACCAATGGTGCCTAGCAAATTCTATCACCTCAAGTACTTGAGTATTGCCCTTGGTGGACAGACCTATGATTACCTTTCTCTGGTTTCCTTTTTTGATGCTTCTCCTTTCTTGGAGACTTTTATCTTGAATGCACTCCGAGAACGCACGGAACGTGCCACAATTTTTGGGGATCCTTCAGGTCTGAGGATGATGCCAGAGCACCGTCATGACAAACTCAAGTGTGTGAAGATAATCAATTTCTCTTCTGTGAAGACTTTGGTTGAGTTAACATGTCACATTGTTGAATCAGCGACAGCACTCGAATGTCTTACGTTGGACACAACGTCAGGTTCGCCTAGATGTTCTGTGAACAGACTTGGTAAATGCTTCTTGATGCGCAGAGAGACACTCATGGAAGCCCACAGAGCACTCAAGGCTGTTCAAACATACATCGAGCTCAAAGTTCCCTCCAAAGTTGAGTTAAACGTCTTGGAGCCTTGCAGCCGGTGCCATGCTCTTGACCTTTAGATGTCAAATATGTGCGTGTGGTTGTTCTTAATAACCAGTATTGCAACTGTCAGTTACAAGTGTTGTTTTATTAAACGTACATTTGCCCCGAAACTATCAGGCTATCAGCCCTGTTTACTGTTGAGGTTTGTAATGACATGGATGTGGTAATGTTTCATTCTGTTATTTCTCTTGAGACTTATGATTCTTTATTTGCTGTGTTTGTAGGATTGATTGTTGATAATATGTTAATAATGA] [+] EMBL AK102063 [CCCATCGGCCTTGTTGGTTTGAAATACAGAGTCCAGGTGCGAGCCAAGTCCCCTCTCTTCGCGACTGATTGCGTTTCCTTAAATATGCAAGGCAGGTAGAGGGCCGGGTGAGAAATTTTGAGATTTCGACCCACAGAGGGCGGAAAACCCTTGGATTTTAGATTCACTCAAGGCTTCGTCGCGTCATGGGTATTTTCAAGTTGAATCTGCTCCTAAAGCTGCAGCGGCAGCGGCAGCGCCGTCGTCGCCAAATCCAAGCCCGTAATGGATCAGTTTTGATTCATCCACGGGATAAAATAAACGCTCCAGCCTGTCAAAATAACACACACTCTTGGAGTGGCCAAGCGAAGTGTTCAGACCCAACGCTTCTGGAGGACGTCTCGTGTCATATACATTCCCTGATGTCTATGCGGGATGCTGCTCGTGTTGCCTGTGTGTCTCGGGCGTTTGCACGTTCCTGGAGATGCCTTCCCAACCTCGACTTCAGTGAGGGATCATTAGGAATAAATAGAAGTACATGCAAAAAAGATGAGAAACTGGGAGATTTGACCAGCAAAATTGATTGGATTCTGAAAAATCACTCAGGCATTGGCATAAAGAAACTCATCATTCAGGTTGGCAGTGTATACAGTCGGGACAGTAGTCATCTTGCTCATCTCGATAGTTGGCTTCAGTGTGCTGTTAAACCAGGGATTGAAGAGCTGATTGTTAATCTGTCATCAATGAATGCAAAATGCAATTTCCCATGTGAACTTTTATCTAGTGGAACTGGAGATTCACTTCGCTATATTTATCTTGCCTCTTGCAACTTCCATCCCACAGTAAGAATTGGTTGCTTGAAAAGCTTGACAAGACTACAGCTGTGTATGGTGAATATCACGGAAAACGAGCTAAGGTGCCTTCTTTCCATTTCATTGGGTTTGGAGCGGTTGGAACTCAGGCACTGCAGTACGTTAAAATGCTTGAAAGTACCATGCCTGCAGCGTCTCAGCTACCTAGATGTTATGACTTGCACCGGGCTGCAAGTTATAGAGAGCAAAGCTCCAAATCTCTCCAGTATTCGCTTTGAAGGTGACCTCTATGTACAATTGTCACTTGGTGAACCACTGCAAATTAAGCAATTGTACAGGTTATGTAATGATGCTGCCTTTTATGCTCGTACTGAGCTGCCATCCAGCATGCCAAATCTTGAAAGGCTTATTATACATTCTGACACTGAGATGGTCAATACACCAATGGTGCCTAGCAAATTCTATCACCTCAAGTACTTGAGTATTGCCCTTGGTGGACAGACCTATGATTACCTTTCTCTGGTTTCCTTTTTTGATGCTTCTCCTTTCTTGGAGACTTTTATCTTGAATGCACTCCGAGAACGCACGGAACGTGCCACAATTTTTGGGGATCCTTCAGGTCTGAGGATGATGCCAGAGCACCGTCATGACAAACTCAAGTGTGTGAAGATAATCAATTTCTCTTCTGTGAAGACTTTGGTTGAGTTAACATGTCACATTGTTGAATCAGCGACAGCACTCGAATGTCTTACGTTGGACACAACGTCAGGTTCGCCTAGATGTTCTGTGAACAGACTTGGTAAATGCTTCTTGATGCGCAGAGAGACACTCATGGAAGCCCACAGAGCACTCAAGGCTGTTCAAACATACATCGAGCTCAAAGTTCCCTCCAAAGTTGAGTTAAACGTCTTGGAGCCTTGCAGCCGGTGCCATGCTCTTGACCTTTAGATGTCAAATATGTGCGTGTGGTTGTTCTTAATAACCAGTATTGCAACTGTCAGTTACAAGTGTTGTTTTATTAAACGTACATTTGCCCCGAAACTATCAGGCTATCAGCCCTGTTTACTGTTGAGGTTTGTAATGACATGGATGTGGTAATGTTTCATTCTGTTATTTCTCTTGAGACTTATGATTCTTTATTTGCTGTGTTTGTAGGATTGATTGTTGATAATATGTTAATAATGA] consensusID : consensus_3748#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [ACAGAGGGCGGAAAACCCTTGGATTTTAGATTCACTCAAGGCTTCGTCGCGTCATGGGTATTTTCAAGTTGAATCTGCTCCTAAAGCTGCAGCGGCAGCGGCAGCGCCGTCGTCGCCAAATCCAAGCCCGTAGTAAGCCAAATCAACTCTATGCTATCGTATTATTTGGTATTTGTACAGCGCTCACTACAAGATCCCCTTCTTTTGCATTAAAAAGTAACTTCTTTTTCCGTCAGAGATGTTCTGTGGATCGTTTCCCTCTGGGGAAAATCTTGTATGTGTGCGCGTTGGGGGATGGACGGCGGCTTACTGATTTTTGTTTTATCTAAGCAGTAGTTTACTTAGTTTTCACTCTTCGTGTAAATTTCACAAAACTACCAAATTATCTCAAACCTACAGATTTGAAGTGTTATCACAAAACTAGGGGTTTAACACTAAATTTATCACAAAACTACATATATATGGCAAAGTATCGTAAAACTACAGATTTAATATTTGATGGTATCA] [+] EMBL CF303147 [ACAGAGGGCGGAAAACCCTTGGATTTTAGATTCACTCAAGGCTTCGTCGCGTCATGGGTATTTTCAAGTTGAATCTGCTCCTAAAGCTGCAGCGGCAGCGGCAGCGCCGTCGTCGCCAAATCCAAGCCCGTAGTAAGCCAAATCAACTCTATGCTATCGTATTATTTGGTATTTGTACAGCGCTCACTACAAGATCCCCTTCTTTTGCATTAAAAAGTAACTTCTTTTTCCGTCAGAGATGTTCTGTGGATCGTTTCCCTCTGGGGAAAATCTTGTATGTGTGCGCGTTGGGGGATGGACGGCGGCTTACTGATTTTTGTTTTATCTAAGCAGTAGTTTACTTAGTTTTCACTCTTCGTGTAAATTTCACAAAACTACCAAATTATCTCAAACCTACAGATTTGAAGTGTTATCACAAAACTAGGGGTTTAACACTAAATTTATCACAAAACTACATATATATGGCAAAGTATCGTAAAACTACAGATTTAATATTTGATGGTATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3748#0 CCCATCGGCCTTGTTGGTTTGAAATACAGAGTCCAGGTGCGAGCCAAGTCCCCTCTCTTC 60 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 GCGACTGATTGCGTTTCCTTAAATATGCAAGGCAGGTAGAGGGCCGGGTGAGAAATTTTG 120 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 AGATTTCGACCCACAGAGGGCGGAAAACCCTTGGATTTTAGATTCACTCAAGGCTTCGTC 180 consensus_3748#1 ------------ACAGAGGGCGGAAAACCCTTGGATTTTAGATTCACTCAAGGCTTCGTC 48 ************************************************ consensus_3748#0 GCGTCATGGGTATTTTCAAGTTGAATCTGCTCCTAAAGCTGCAGCGGCAGCGGCAGCGCC 240 consensus_3748#1 GCGTCATGGGTATTTTCAAGTTGAATCTGCTCCTAAAGCTGCAGCGGCAGCGGCAGCGCC 108 ************************************************************ consensus_3748#0 GTCGTCGCCAAATCCAAGCCCGTAATGGATCAGTTTTGATTCATCCACGGGATAAAATAA 300 consensus_3748#1 GTCGTCGCCAAATCCAAGCCCGTAGTAAGCCAAATCAACTCTAT----GCTATCGTATTA 164 ************************ * ** * * ** * ** ** * consensus_3748#0 ACGCTCCAGCCTGTCAAAATAACACACACTCTTGGAGTGGCCAAGCGAAGTGTTCAGACC 360 consensus_3748#1 ----TTTGG--TATTTGTACAGCGCTCACTACAAGA-TCCCCTTCTTTTGCATTAAAAAG 217 * * * * * * * * **** ** * ** * ** * * consensus_3748#0 CAACGCTTCTGGAGGACGTCTCGTGTCATATACATTCCCTGATGTCTATGCGGGATGCTG 420 consensus_3748#1 TAAC--TTCT--------TTTTCCGTCAGAGATGTTCTGTGG-ATCGTTTCCCTCTGGGG 266 *** **** * * **** * * *** ** ** * * ** * consensus_3748#0 CTCGTGTTGCCTGTGTGTCTCGGGCGTTTGCACGTTCCTGGAGATGCCTTCCCAACCTCG 480 consensus_3748#1 AAAATCTTGTATGTGTGC-----GCGTTGGGGGATG---GACGGCGGCTTACTGATTTTT 318 * *** ****** ***** * * * * * *** * * * consensus_3748#0 ACTTCAGTGAGGGATCATTAGGAATAAATAGAAGTACATGCAAAAAAGATGAGAAACTGG 540 consensus_3748#1 GTTTTATCTAAGCAGTAGTTTACTTAGTTTTCACTCTTCGTGTAAATTTCACAAAACTAC 378 ** * * * * * * ** * * * * *** ***** consensus_3748#0 GAGATTTGACCAGCAAAATTGATTGGA--TTCTGAAAAATCACTCAGGCATTGGCATAAA 598 consensus_3748#1 CAAATTATCTCAAACCTACAGATTTGAAGTGTTATCACAAAACTAGGGGTTTAACACTAA 438 * *** ** * **** ** * * * * *** ** ** ** ** consensus_3748#0 GAAACTCATCATTCAGGTTGGCAGTGTATACAGTCGGGACAGTAGTCATCTTGCTCATCT 658 consensus_3748#1 ---ATTTATCA--CAAAACTACA-TATATATGGCAAAG--TATCGTAAAACTACAGAT-T 489 * * **** ** ** * **** * * * ** * * * ** * consensus_3748#0 CGATAGTTGGCTTCAGTGTGCTGTTAAACCAGGGATTGAAGAGCTGATTGTTAATCTGTC 718 consensus_3748#1 TAATATTTGATGGTATCA------------------------------------------ 507 *** *** * consensus_3748#0 ATCAATGAATGCAAAATGCAATTTCCCATGTGAACTTTTATCTAGTGGAACTGGAGATTC 778 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 ACTTCGCTATATTTATCTTGCCTCTTGCAACTTCCATCCCACAGTAAGAATTGGTTGCTT 838 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 GAAAAGCTTGACAAGACTACAGCTGTGTATGGTGAATATCACGGAAAACGAGCTAAGGTG 898 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 CCTTCTTTCCATTTCATTGGGTTTGGAGCGGTTGGAACTCAGGCACTGCAGTACGTTAAA 958 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 ATGCTTGAAAGTACCATGCCTGCAGCGTCTCAGCTACCTAGATGTTATGACTTGCACCGG 1018 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 GCTGCAAGTTATAGAGAGCAAAGCTCCAAATCTCTCCAGTATTCGCTTTGAAGGTGACCT 1078 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 CTATGTACAATTGTCACTTGGTGAACCACTGCAAATTAAGCAATTGTACAGGTTATGTAA 1138 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 TGATGCTGCCTTTTATGCTCGTACTGAGCTGCCATCCAGCATGCCAAATCTTGAAAGGCT 1198 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 TATTATACATTCTGACACTGAGATGGTCAATACACCAATGGTGCCTAGCAAATTCTATCA 1258 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 CCTCAAGTACTTGAGTATTGCCCTTGGTGGACAGACCTATGATTACCTTTCTCTGGTTTC 1318 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 CTTTTTTGATGCTTCTCCTTTCTTGGAGACTTTTATCTTGAATGCACTCCGAGAACGCAC 1378 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 GGAACGTGCCACAATTTTTGGGGATCCTTCAGGTCTGAGGATGATGCCAGAGCACCGTCA 1438 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 TGACAAACTCAAGTGTGTGAAGATAATCAATTTCTCTTCTGTGAAGACTTTGGTTGAGTT 1498 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 AACATGTCACATTGTTGAATCAGCGACAGCACTCGAATGTCTTACGTTGGACACAACGTC 1558 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 AGGTTCGCCTAGATGTTCTGTGAACAGACTTGGTAAATGCTTCTTGATGCGCAGAGAGAC 1618 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 ACTCATGGAAGCCCACAGAGCACTCAAGGCTGTTCAAACATACATCGAGCTCAAAGTTCC 1678 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 CTCCAAAGTTGAGTTAAACGTCTTGGAGCCTTGCAGCCGGTGCCATGCTCTTGACCTTTA 1738 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 GATGTCAAATATGTGCGTGTGGTTGTTCTTAATAACCAGTATTGCAACTGTCAGTTACAA 1798 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 GTGTTGTTTTATTAAACGTACATTTGCCCCGAAACTATCAGGCTATCAGCCCTGTTTACT 1858 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 GTTGAGGTTTGTAATGACATGGATGTGGTAATGTTTCATTCTGTTATTTCTCTTGAGACT 1918 consensus_3748#1 ------------------------------------------------------------ consensus_3748#0 TATGATTCTTTATTTGCTGTGTTTGTAGGATTGATTGTTGATAATATGTTAATAATGA 1976 consensus_3748#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||