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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3752#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1740 fasta sequence
[ACACCCTTCCGATCCACCCTCGCATCACTCTTCCAGCCTCCCCTCCCCCCAACTCCGGCGATGGCCGGCCGCCTCCCCGGCGCCGCCTCCGCCGCCGCGGCGCCCCTCCCCCGAGCGCTCCTGCTACTCGCCGCCCTCGCCCTATTCTCCCTCACCTTCCTCTCCCTCCGCTCGCTCCGCCCCGCCGCGGCCCCACCCTCCCTCGCCATCGGCGGCTCCCGCCCTTCCTCCTTCGCGCGGCCGTCGGTGTACCACTCCGCCGAGGCCTTCGCGGCGGGGTACGCGGAGATGGAGCGGAGCTTCAAGGTGTACATGTACCCGGACGGCGACCCCAAGACGTTCTACCAGACGCCGCGGAAGCTCACGGGGAAGTACGCCAGCGAGGGCTACTTCTTCCAGAACATCCGCGAGAGCCGCTTCCGCACCGGCGACCCCGACAAGGCGCACCTCTTCTTCGTCCCCATCTCCCCCCACAAGATGCGCGGCAAGGGTACTTCATATGAGAACATGACAATAATAGTTAAGGATTATGTGGAAGGCTTGATAAACAAGTATCCTTACTGGAACAGGACACTTGGAGCGGACCATTTCTTTGTCACCTGCCATGATGTAGGTGTTAGGGCTTTTGAAGGACTTCCATTCATGGTGAAGAATTCTATTAGAGTTGTCTGTTCTCCAAGCTATAATGTTGACTTTATACCGCATAAGGATATCGCTCTTCCTCAAGTATTGCAGCCATTTGCTCTGCCTGAAGGAGGAAATGATGTTGAGAACAGGACAATCCTTGGATTTTGGGCTGGCCATCGCAATTCTAAAATAAGAGTCATTTTGGCACAAGTCTGGGAGAATGATACAGAGCTTGCTATCAGTAACAATCGGATCAGTAGAGCTATTGGAGAGCTGGTTTACCAGAAGCAGTTCTACCACACAAAGTTCTGTATTTGTCCTGGTGGCTCTCAAGTTAATAGTGCCCGTATATCTGATTCAATACACTACGGTTGTGTTCCTGTTATTTTGTCAGACTACTACGATTTGCCTTTCAATGATATCCTAGACTGGAGAAAATTTGCTGTTGTACTTAAGGAGCGTGATGTATATCAACTAAAAAGTATACTTAAATCTATATCACAGGAAGAGTTTGTTGAATTGCACAAATCTCTTGTTCAGGTACAGAAACACTTTGTGTGGCATTCACCTCCTCTTCCTTACGACGCGTTCCACATGGTTATGTATGAACTATGGTTGCGACATCATGTGATCAAGTACTAAATTCAACCATCCAAGTCTGGGCAGATACAAACATGAAAGCCTTATCCGTATGAATATGATGCGGAGTCTGACAACTATCCGGTGCTCTACTGAACATGCATTCATTCTTATGCTCATATATCAGCAACTGGATGGATCATTGTGCGTAGGTGTCATCTTGAGCATCTGCATCAGAGAAGTTGGCGACCATCGACCATAAATCATCAAAATGGAGTTGCTAGGTAATAGACTGATTAGTTCATTCTTTCAAGAATAGTTTTGTTTTTCCGCCATATTGCACTCTTTGTAAGCTGCGTTTTCTAGTTTGCCTGTGATACGGTATCCTTTACGGATCTGCCCATTTCTTACTCATGTAAAGTAATGTACGATGTTACTAACAAGACAGAGAACTGAACCAAGTAGGAGTAGAATATTGTTGTGATCAGCAAACTTTCAGGGGTTAATTTCACCATGCACCATGCGATCTATGGA]
[+] EMBL AK065525 [ACACCCTTCCGATCCACCCTCGCATCACTCTTCCAGCCTCCCCTCCCCCCAACTCCGGCGATGGCCGGCCGCCTCCCCGGCGCCGCCTCCGCCGCCGCGGCGCCCCTCCCCCGAGCGCTCCTGCTACTCGCCGCCCTCGCCCTATTCTCCCTCACCTTCCTCTCCCTCCGCTCGCTCCGCCCCGCCGCGGCCCCACCCTCCCTCGCCATCGGCGGCTCCCGCCCTTCCTCCTTCGCGCGGCCGTCGGTGTACCACTCCGCCGAGGCCTTCGCGGCGGGGTACGCGGAGATGGAGCGGAGCTTCAAGGTGTACATGTACCCGGACGGCGACCCCAAGACGTTCTACCAGACGCCGCGGAAGCTCACGGGGAAGTACGCCAGCGAGGGCTACTTCTTCCAGAACATCCGCGAGAGCCGCTTCCGCACCGGCGACCCCGACAAGGCGCACCTCTTCTTCGTCCCCATCTCCCCCCACAAGATGCGCGGCAAGGGTACTTCATATGAGAACATGACAATAATAGTTAAGGATTATGTGGAAGGCTTGATAAACAAGTATCCTTACTGGAACAGGACACTTGGAGCGGACCATTTCTTTGTCACCTGCCATGATGTAGGTGTTAGGGCTTTTGAAGGACTTCCATTCATGGTGAAGAATTCTATTAGAGTTGTCTGTTCTCCAAGCTATAATGTTGACTTTATACCGCATAAGGATATCGCTCTTCCTCAAGTATTGCAGCCATTTGCTCTGCCTGAAGGAGGAAATGATGTTGAGAACAGGACAATCCTTGGATTTTGGGCTGGCCATCGCAATTCTAAAATAAGAGTCATTTTGGCACAAGTCTGGGAGAATGATACAGAGCTTGCTATCAGTAACAATCGGATCAGTAGAGCTATTGGAGAGCTGGTTTACCAGAAGCAGTTCTACCACACAAAGTTCTGTATTTGTCCTGGTGGCTCTCAAGTTAATAGTGCCCGTATATCTGATTCAATACACTACGGTTGTGTTCCTGTTATTTTGTCAGACTACTACGATTTGCCTTTCAATGATATCCTAGACTGGAGAAAATTTGCTGTTGTACTTAAGGAGCGTGATGTATATCAACTAAAAAGTATACTTAAATCTATATCACAGGAAGAGTTTGTTGAATTGCACAAATCTCTTGTTCAGGTACAGAAACACTTTGTGTGGCATTCACCTCCTCTTCCTTACGACGCGTTCCACATGGTTATGTATGAACTATGGTTGCGACATCATGTGATCAAGTACTAAATTCAACCATCCAAGTCTGGGCAGATACAAACATGAAAGCCTTATCCGTATGAATATGATGCGGAGTCTGACAACTATCCGGTGCTCTACTGAACATGCATTCATTCTTATGCTCATATATCAGCAACTGGATGGATCATTGTGCGTAGGTGTCATCTTGAGCATCTGCATCAGAGAAGTTGGCGACCATCGACCATAAATCATCAAAATGGAGTTGCTAGGTAATAGACTGATTAGTTCATTCTTTCAAGAATAGTTTTGTTTTTCCGCCATATTGCACTCTTTGTAAGCTGCGTTTTCTAGTTTGCCTGTGATACGGTATCCTTTACGGATCTGCCCATTTCTTACTCATGTAAAGTAATGTACGATGTTACTAACAAGACAGAGAACTGAACCAAGTAGGAGTAGAATATTGTTGTGATCAGCAAACTTTCAGGGGTTAATTTCACCATGCACCATGCGATCTATGGA]
consensusID : consensus_3752#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence
[ATGGCCAATCATTCTCCCCTAATCCCGCCGCCGCCGCGTCGGAGGTGTACCACTCCCCGGAGGAGGTCTCTGCTGGGGTACGGCAGAGATGGAGAGGAGCTTCAAGGTGTTCGTCTACCCCGACGGCGACCCCGGCACTGTTCTACCATACGCCGCGGAAGCTGACCGGCAAGTACGCCAGCGAGGGCTACTTCTTCCAGAACATTCGCGAGAGCCGCTTCCGCACCGACGACCTCGAGCAGGCGCACCTCTTCTTCGTCCCCATTTCTCCCCACAAGATGCGCGGCAAGGTCCCCAATTCTTTGCTACTCGTTACATATGCGTGGTTAATCTTGCATATTCGATCATATGATCGATCTATTTTGTTTCTTGATTTGTACTGGTGGTGTCCGCTTTGTTCATCATTTCGTGGTAAGCATGACAATTCAAGCAACGGATCAAGCGGACCTGTAATACTGGTAGGCTGGCACTACATTTTCAATTTGTGCAAACTCACTGAAGTATGAATGGATCATTTTTGAATTATACAAGAAATAGAATCTCATTATTGAAAAACTTTAAAGTGTTCCATTTGATTTCTGGGATTTAGCAAATTAATGGTGGATTCTTGGATTAAGGT]
[+] EMBL CB632030 [ATGGCCAATCATTCTCCCCTAATCCCGCCGCCGCCGCGTCGGAGGTGTACCACTCCCCGGAGGAGGTCTCTGCTGGGGTACGGCAGAGATGGAGAGGAGCTTCAAGGTGTTCGTCTACCCCGACGGCGACCCCGGCACTGTTCTACCATACGCCGCGGAAGCTGACCGGCAAGTACGCCAGCGAGGGCTACTTCTTCCAGAACATTCGCGAGAGCCGCTTCCGCACCGACGACCTCGAGCAGGCGCACCTCTTCTTCGTCCCCATTTCTCCCCACAAGATGCGCGGCAAGGTCCCCAATTCTTTGCTACTCGTTACATATGCGTGGTTAATCTTGCATATTCGATCATATGATCGATCTATTTTGTTTCTTGATTTGTACTGGTGGTGTCCGCTTTGTTCATCATTTCGTGGTAAGCATGACAATTCAAGCAACGGATCAAGCGGACCTGTAATACTGGTAGGCTGGCACTACATTTTCAATTTGTGCAAACTCACTGAAGTATGAATGGATCATTTTTGAATTATACAAGAAATAGAATCTCATTATTGAAAAACTTTAAAGTGTTCCATTTGATTTCTGGGATTTAGCAAATTAATGGTGGATTCTTGGATTAAGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3752#0 ACACCCTTCCGATCCACCCTCGCATCACTCTTCCAGCCTCCCCTCCCCCCAACTCCGGCG 60
consensus_3752#1 ------------------------------------------------------------
consensus_3752#0 ATGGCCGGCCGCCTCCCCGGCGCCGCCTCCGCCGCCGCGGCGCCCCTCCCCCGAGCGCTC 120
consensus_3752#1 ------------------------------------------------------------
consensus_3752#0 CTGCTACTCGCCGCCCTCGCCCTATTCTCCCTCACCTTCCTCTCCCTCCGCTCGCTCCGC 180
consensus_3752#1 ------------------------------------------------------------
consensus_3752#0 CCCGCCGCGGCCCCACCCTCCCTCGCCATCGGCGGCTCCCGCCCTTCCTCCTTCGCGCGG 240
consensus_3752#1 ---------------------ATGGCCAATCATT-CTCCCCTAATCCCGCCGCCGCCGCG 38
* **** ***** * ** ** *** *
consensus_3752#0 CCGTCGGTGTACCACTCCGCCGAGGCCTTCGCGGC-GGGGTACG-CGGAGATGGAGCGGA 298
consensus_3752#1 TCGGAGGTGTACCACTCCCCGGAGGAGGTCTCTGCTGGGGTACGGCAGAGATGGAGAGGA 98
** ************* * **** ** * ** ******** * ********* ***
consensus_3752#0 GCTTCAAGGTGTACATGTACCCGGACGGCGACCCCAAGAC-GTTCTACCAGACGCCGCGG 357
consensus_3752#1 GCTTCAAGGTGTTCGTCTACCCCGACGGCGACCCCGGCACTGTTCTACCATACGCCGCGG 158
************ * * ***** ************ ** ********* *********
consensus_3752#0 AAGCTCACGGGGAAGTACGCCAGCGAGGGCTACTTCTTCCAGAACATCCGCGAGAGCCGC 417
consensus_3752#1 AAGCTGACCGGCAAGTACGCCAGCGAGGGCTACTTCTTCCAGAACATTCGCGAGAGCCGC 218
***** ** ** *********************************** ************
consensus_3752#0 TTCCGCACCGGCGACCCCGACAAGGCGCACCTCTTCTTCGTCCCCATCTCCCCCCACAAG 477
consensus_3752#1 TTCCGCACCGACGACCTCGAGCAGGCGCACCTCTTCTTCGTCCCCATTTCTCCCCACAAG 278
********** ***** *** ************************* ** *********
consensus_3752#0 ATGCGCGGCAAGGGTACTTCATATGAGAACATGACAATAATAGTTAAGGATTATGTGGAA 537
consensus_3752#1 ATGCGCGGCAAGGTCCCCAATTCTTTGCTACTCGTTACA-TATGCGTGGTTAATCTTGCA 337
************* * * * * * * * ** ** * ** * * *
consensus_3752#0 GGCTTGATAAACAAGT--ATCCTTACTGGAACAGGACACTTGGAGCGGACCATTTCTTTG 595
consensus_3752#1 TATTCGATCATATGATCGATCTATTTTGTTTCTTGATTTGTACTGGTGGTGTCCGCTTTG 397
* *** * * *** * ** * ** * * * *****
consensus_3752#0 TCACCTGCCATGATGTAGGTGTTAGGGCTTTTGAAGGACTTCCATTCATGGTGAAGAATT 655
consensus_3752#1 TTCATCATTTCGTGGTAAGCATGACAATTCAAGCAACGGATCAAGC--GGACCTGTAATA 455
* * *** * * * * * * ** * * ***
consensus_3752#0 CTATTAGAGTTGT-CTGTTCTCCAAGCTATAATGTTGACTTTATACCGCATAAGGATATC 714
consensus_3752#1 CTGGTAGGCTGGCACTACATTTTCAATTT--GTGCAAACTCACTGAAGTATGAATGGATC 513
** *** * * ** * * * ** *** * * ** * ***
consensus_3752#0 GCTCTTCCTCAAGTATTGCAGCCATTTGCTCTGCCTGAAGGAGGAAATGATGTTGAGAAC 774
consensus_3752#1 ATTTT---TGAATTATACAAGAAATAGAATCTCATTATTGAA--AAACTTTAAAGTGTTC 568
* * * ** *** ** ** *** * * * *** * * * *
consensus_3752#0 AGGACAATCCTTGGATTTTGGGCTGGCCATCGCA-ATTCTAAAATAAGAGTCATTTTGGC 833
consensus_3752#1 CATTTGATTTCTGGGATTTAGCAAATTAATGGTGGATTCTTGGATTAAGGT--------- 619
** *** *** * ** * ***** ** * **
consensus_3752#0 ACAAGTCTGGGAGAATGATACAGAGCTTGCTATCAGTAACAATCGGATCAGTAGAGCTAT 893
consensus_3752#1 ------------------------------------------------------------
consensus_3752#0 TGGAGAGCTGGTTTACCAGAAGCAGTTCTACCACACAAAGTTCTGTATTTGTCCTGGTGG 953
consensus_3752#1 ------------------------------------------------------------
consensus_3752#0 CTCTCAAGTTAATAGTGCCCGTATATCTGATTCAATACACTACGGTTGTGTTCCTGTTAT 1013
consensus_3752#1 ------------------------------------------------------------
consensus_3752#0 TTTGTCAGACTACTACGATTTGCCTTTCAATGATATCCTAGACTGGAGAAAATTTGCTGT 1073
consensus_3752#1 ------------------------------------------------------------
consensus_3752#0 TGTACTTAAGGAGCGTGATGTATATCAACTAAAAAGTATACTTAAATCTATATCACAGGA 1133
consensus_3752#1 ------------------------------------------------------------
consensus_3752#0 AGAGTTTGTTGAATTGCACAAATCTCTTGTTCAGGTACAGAAACACTTTGTGTGGCATTC 1193
consensus_3752#1 ------------------------------------------------------------
consensus_3752#0 ACCTCCTCTTCCTTACGACGCGTTCCACATGGTTATGTATGAACTATGGTTGCGACATCA 1253
consensus_3752#1 ------------------------------------------------------------
consensus_3752#0 TGTGATCAAGTACTAAATTCAACCATCCAAGTCTGGGCAGATACAAACATGAAAGCCTTA 1313
consensus_3752#1 ------------------------------------------------------------
consensus_3752#0 TCCGTATGAATATGATGCGGAGTCTGACAACTATCCGGTGCTCTACTGAACATGCATTCA 1373
consensus_3752#1 ------------------------------------------------------------
consensus_3752#0 TTCTTATGCTCATATATCAGCAACTGGATGGATCATTGTGCGTAGGTGTCATCTTGAGCA 1433
consensus_3752#1 ------------------------------------------------------------
consensus_3752#0 TCTGCATCAGAGAAGTTGGCGACCATCGACCATAAATCATCAAAATGGAGTTGCTAGGTA 1493
consensus_3752#1 ------------------------------------------------------------
consensus_3752#0 ATAGACTGATTAGTTCATTCTTTCAAGAATAGTTTTGTTTTTCCGCCATATTGCACTCTT 1553
consensus_3752#1 ------------------------------------------------------------
consensus_3752#0 TGTAAGCTGCGTTTTCTAGTTTGCCTGTGATACGGTATCCTTTACGGATCTGCCCATTTC 1613
consensus_3752#1 ------------------------------------------------------------
consensus_3752#0 TTACTCATGTAAAGTAATGTACGATGTTACTAACAAGACAGAGAACTGAACCAAGTAGGA 1673
consensus_3752#1 ------------------------------------------------------------
consensus_3752#0 GTAGAATATTGTTGTGATCAGCAAACTTTCAGGGGTTAATTTCACCATGCACCATGCGAT 1733
consensus_3752#1 ------------------------------------------------------------
consensus_3752#0 CTATGGA 1740
consensus_3752#1 -------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||