cluster # 3756

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Oryza sativa
cluster # 3756 cluster # 3756 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3756#0 length = 366 sequences # 1

consensus_3756#1 length = 291 sequences # 1

consensusID : consensus_3756#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [TCCATACTCCGAACACTGCAGATCACGAGGTGCGGTGTTGTAGCTTCGACCGAGGAATGAGCTTGCATTGCTGTCCGGCGGCCGGCGACCCGCCGGCGCCGGCCGGGACGGCGGAGGAGCTGCTGGAGCGGGCGCGGTCGCTGGTGCCGGCGGCGCTGGACGCGGCGCGCGCGGCGACCGGCTTCGGCGGCCGGTGGAAGGTTATCGCGGCGAGGCTGGAGAGGGTGCCGCCGTGCCTGTCCGACCTGTCCAGCCACCCGTGCTTCTCCAAGAACTCGCTCTGCCGCGAGCTTCTGCAGTCGGTGGCCGCCACGCTCGCCGAGGCCGNCGAGCTCGGGGCGCGCTGCCGCGAGCCGNCGAGGGCCG]

[+] EMBL AU181935             [TCCATACTCCGAACACTGCAGATCACGAGGTGCGGTGTTGTAGCTTCGACCGAGGAATGAGCTTGCATTGCTGTCCGGCGGCCGGCGACCCGCCGGCGCCGGCCGGGACGGCGGAGGAGCTGCTGGAGCGGGCGCGGTCGCTGGTGCCGGCGGCGCTGGACGCGGCGCGCGCGGCGACCGGCTTCGGCGGCCGGTGGAAGGTTATCGCGGCGAGGCTGGAGAGGGTGCCGCCGTGCCTGTCCGACCTGTCCAGCCACCCGTGCTTCTCCAAGAACTCGCTCTGCCGCGAGCTTCTGCAGTCGGTGGCCGCCACGCTCGCCGAGGCCGNCGAGCTCGGGGCGCGCTGCCGCGAGCCGNCGAGGGCCG]




>consensus_3756#0
TCCATACTCCGAACACTGCAGATCACGAGGTGCGGTGTTGTAGCTTCGACCGAGGAATGA
GCTTGCATTGCTGTCCGGCGGCCGGCGACCCGCCGGCGCCGGCCGGGACGGCGGAGGAGC
TGCTGGAGCGGGCGCGGTCGCTGGTGCCGGCGGCGCTGGACGCGGCGCGCGCGGCGACCG
GCTTCGGCGGCCGGTGGAAGGTTATCGCGGCGAGGCTGGAGAGGGTGCCGCCGTGCCTGT
CCGACCTGTCCAGCCACCCGTGCTTCTCCAAGAACTCGCTCTGCCGCGAGCTTCTGCAGT
CGGTGGCCGCCACGCTCGCCGAGGCCGNCGAGCTCGGGGCGCGCTGCCGCGAGCCGNCGA
GGGCCG

consensusID : consensus_3756#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 291
fasta sequence

                              [GTNCTCATTCACTCTCCACCAACCTTGCCACCATTCTNTCCAGTCAAAACTTGAATTTNTTAAACCAAGCATTGATAATTTGTAAGAAAATTCCGGGAATTTTAAATAGGACTTTTTGTACCCAGCACGTCGTTTTNATTCTTTGTNACGAGCATTTACTTCTCCGGAATTCACATTTCGATCCANAGAAGAACATCGGGCTGGGGCACTGTAGCAGCTCATCTNAGTGGGGCGAATGGTTAGCGATCACGAGGTGCGGTGTTGTAGCTTCGACCGAGGAATGAGCTTGCA]

[+] EMBL C71879               [GTNCTCATTCACTCTCCACCAACCTTGCCACCATTCTNTCCAGTCAAAACTTGAATTTNTTAAACCAAGCATTGATAATTTGTAAGAAAATTCCGGGAATTTTAAATAGGACTTTTTGTACCCAGCACGTCGTTTTNATTCTTTGTNACGAGCATTTACTTCTCCGGAATTCACATTTCGATCCANAGAAGAACATCGGGCTGGGGCACTGTAGCAGCTCATCTNAGTGGGGCGAATGGTTAGCGATCACGAGGTGCGGTGTTGTAGCTTCGACCGAGGAATGAGCTTGCA]




>consensus_3756#1
GTNCTCATTCACTCTCCACCAACCTTGCCACCATTCTNTCCAGTCAAAACTTGAATTTNT
TAAACCAAGCATTGATAATTTGTAAGAAAATTCCGGGAATTTTAAATAGGACTTTTTGTA
CCCAGCACGTCGTTTTNATTCTTTGTNACGAGCATTTACTTCTCCGGAATTCACATTTCG
ATCCANAGAAGAACATCGGGCTGGGGCACTGTAGCAGCTCATCTNAGTGGGGCGAATGGT
TAGCGATCACGAGGTGCGGTGTTGTAGCTTCGACCGAGGAATGAGCTTGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3756#0      TCCATACTCCGAACACTGCAGATCACGAGGTGCGGTGTTGTAGCTTCGACCGAGGAATGA 60
consensus_3756#1      ----------GTNCTCATTCACTCTCCACCAACCTTGCCACCATTCTNTCCAGTCAA--A 48
                                *  * *      ** * *    *  **       *    **    **  *

consensus_3756#0      GCTTGCATTGCT--GTCCGGCGGCCGGCGACCCGCCGGCGCCGGCCGGGA---CGGCGGA 115
consensus_3756#1      ACTTGAATTTNTTAAACCAAGCATTGATAATTTGTAAGAAAATTCCGGGAATTTTAAATA 108
                       **** ***  *    **       *   *   *   *      ******         *

consensus_3756#0      GGAGCTGCTGGAGCGGGCGCGGTCGCTGGTGCCGGCGGCGCTGGACGCGGCGCGCGCGGC 175
consensus_3756#1      GGACTTTTTGTACCCAGCACG-TCGTTTTNATTCTTTGTNACGAGCATTTACTTCTCCGG 167
                      ***  *  ** * *  ** ** *** *          *    *  *        * * * 

consensus_3756#0      GACCGGCTTCGGCGGCCGGTGGAAGGTTATCGCGGCGAGGCTGGAGAGGGTGCCGCCGTG 235
consensus_3756#1      AATTCACATTT-CGATCCANAGAAGAACATCGGGCTGGGGCACTGTAGCAGCTCATCTNA 226
                       *    * *   **  *    ****   **** *  * ***     **     *  *   

consensus_3756#0      CCTGTCCGACCTGTC--CAGCCACCCGTGCTTCTCCAAGAACTCGCTCTGCCGCGAGCTT 293
consensus_3756#1      GTGGGGCGAATGGTTAGCGATCACGAGGTGCGGTGTTGTAGCTTCGACCGAGGAATGAGC 286
                         *  ***   **   *   ***  *      *     * **    * *  *   *   

consensus_3756#0      CTGCAGTCGGTGGCCGCCACGCTCGCCGAGGCCGNCGAGCTCGGGGCGCGCTGCCGCGAG 353
consensus_3756#1      TTGCA------------------------------------------------------- 291
                       ****                                                       

consensus_3756#0      CCGNCGAGGGCCG 366
consensus_3756#1      -------------