cluster # 3779

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Oryza sativa
cluster # 3779 cluster # 3779 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3779#0 length = 997 sequences # 1

consensus_3779#1 length = 188 sequences # 1

consensusID : consensus_3779#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 997
fasta sequence

                              [TGCACGGGGAACTCGCCGTCCCGGCCTCACTCGGCCAGCCATGGAGCTCGACCTCCCGCCGAAGCAACAAGCCCCGCCGCTCGCCGACCTCGCCGTTGCCATCCACCGGGCCGCCGAGGCCACCACCGCGCTCTCCGCACCCTCCTCCTCTTCCCAAGCCGCCGCCGCCGCGGTGGTCGCCCTCCGTGACGCCCACGCCGCTATAGGCGGCTTCCTCTATCGCCTCGACGTCTCAGTCCCTGCCTCTTCTTCGTCCAGCGACGATCAGCCGATGGCGGACGGCTGCGAGGAGGAGGGGGAGGGGGAGCAGCAGATGGTAGAGGAGGTGGAGGAGGGTCTCCGGGAGTGCGCCCTGCAGGGGAGCAAGCGGCGGAAGCGGCCTGTGCCGCCGTCGTGGCCCCTAGGGCGCCGCTCGAGTGGCGGTTGCGTGGTGCCGGAGGCCGCGCCGGCTCCTCTGGACGTGGAGGGGCGGCGGCGCGCTGCCATGGATCTCTTGCTACAGTTCCATGGGTAGGATGAGTGCAGGGTTCATTGGCACAATACGAACGAAATGATGAGGCGCCTACTGAATAGTCCATACCAAGTTTGTAGGTCATACACTCGTGCTGTTCTTCACGAAGATATACACAAACATATCAAACAAACCACAAGCAAATAGGTGAAATCACCAACCTTCCCAATACTGAGGCAGCTAGAAATCAACACTTCAGCAGTGAGTGTGAGACAGAGCTAGTATCAAGCAGTACTCATCAACATAATGAGCCACTTAGCCTTACAGATTGTGTTATTTCCCAAAAAATAAAAAGTGAGATGAAAGACTCAGATTTGAGTCCCAAGATTGTTTTGTTTTTCAGTAAATGGGCTGAATCATTTGTCTCCTCAGGCGTTAATTCGTTATCCCCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGTTCCTGGAAGGTATTTATTTTACATCTAATATTTTTTA]

[+] EMBL AK073622             [TGCACGGGGAACTCGCCGTCCCGGCCTCACTCGGCCAGCCATGGAGCTCGACCTCCCGCCGAAGCAACAAGCCCCGCCGCTCGCCGACCTCGCCGTTGCCATCCACCGGGCCGCCGAGGCCACCACCGCGCTCTCCGCACCCTCCTCCTCTTCCCAAGCCGCCGCCGCCGCGGTGGTCGCCCTCCGTGACGCCCACGCCGCTATAGGCGGCTTCCTCTATCGCCTCGACGTCTCAGTCCCTGCCTCTTCTTCGTCCAGCGACGATCAGCCGATGGCGGACGGCTGCGAGGAGGAGGGGGAGGGGGAGCAGCAGATGGTAGAGGAGGTGGAGGAGGGTCTCCGGGAGTGCGCCCTGCAGGGGAGCAAGCGGCGGAAGCGGCCTGTGCCGCCGTCGTGGCCCCTAGGGCGCCGCTCGAGTGGCGGTTGCGTGGTGCCGGAGGCCGCGCCGGCTCCTCTGGACGTGGAGGGGCGGCGGCGCGCTGCCATGGATCTCTTGCTACAGTTCCATGGGTAGGATGAGTGCAGGGTTCATTGGCACAATACGAACGAAATGATGAGGCGCCTACTGAATAGTCCATACCAAGTTTGTAGGTCATACACTCGTGCTGTTCTTCACGAAGATATACACAAACATATCAAACAAACCACAAGCAAATAGGTGAAATCACCAACCTTCCCAATACTGAGGCAGCTAGAAATCAACACTTCAGCAGTGAGTGTGAGACAGAGCTAGTATCAAGCAGTACTCATCAACATAATGAGCCACTTAGCCTTACAGATTGTGTTATTTCCCAAAAAATAAAAAGTGAGATGAAAGACTCAGATTTGAGTCCCAAGATTGTTTTGTTTTTCAGTAAATGGGCTGAATCATTTGTCTCCTCAGGCGTTAATTCGTTATCCCCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGTTCCTGGAAGGTATTTATTTTACATCTAATATTTTTTA]




>consensus_3779#0
TGCACGGGGAACTCGCCGTCCCGGCCTCACTCGGCCAGCCATGGAGCTCGACCTCCCGCC
GAAGCAACAAGCCCCGCCGCTCGCCGACCTCGCCGTTGCCATCCACCGGGCCGCCGAGGC
CACCACCGCGCTCTCCGCACCCTCCTCCTCTTCCCAAGCCGCCGCCGCCGCGGTGGTCGC
CCTCCGTGACGCCCACGCCGCTATAGGCGGCTTCCTCTATCGCCTCGACGTCTCAGTCCC
TGCCTCTTCTTCGTCCAGCGACGATCAGCCGATGGCGGACGGCTGCGAGGAGGAGGGGGA
GGGGGAGCAGCAGATGGTAGAGGAGGTGGAGGAGGGTCTCCGGGAGTGCGCCCTGCAGGG
GAGCAAGCGGCGGAAGCGGCCTGTGCCGCCGTCGTGGCCCCTAGGGCGCCGCTCGAGTGG
CGGTTGCGTGGTGCCGGAGGCCGCGCCGGCTCCTCTGGACGTGGAGGGGCGGCGGCGCGC
TGCCATGGATCTCTTGCTACAGTTCCATGGGTAGGATGAGTGCAGGGTTCATTGGCACAA
TACGAACGAAATGATGAGGCGCCTACTGAATAGTCCATACCAAGTTTGTAGGTCATACAC
TCGTGCTGTTCTTCACGAAGATATACACAAACATATCAAACAAACCACAAGCAAATAGGT
GAAATCACCAACCTTCCCAATACTGAGGCAGCTAGAAATCAACACTTCAGCAGTGAGTGT
GAGACAGAGCTAGTATCAAGCAGTACTCATCAACATAATGAGCCACTTAGCCTTACAGAT
TGTGTTATTTCCCAAAAAATAAAAAGTGAGATGAAAGACTCAGATTTGAGTCCCAAGATT
GTTTTGTTTTTCAGTAAATGGGCTGAATCATTTGTCTCCTCAGGCGTTAATTCGTTATCC
CCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGT
TCCTGGAAGGTATTTATTTTACATCTAATATTTTTTA

consensusID : consensus_3779#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 188
fasta sequence

                              [CCCAAGATTGTTTTGTTTTTNAGTAAATGGGCTGAATCATTTGTNTCCTCAGGCGTTAATTCGTTATCCCCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGTTCCTGGAAGGTATTTATTTNACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU182209             [CCCAAGATTGTTTTGTTTTTNAGTAAATGGGCTGAATCATTTGTNTCCTCAGGCGTTAATTCGTTATCCCCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGTTCCTGGAAGGTATTTATTTNACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_3779#1
CCCAAGATTGTTTTGTTTTTNAGTAAATGGGCTGAATCATTTGTNTCCTCAGGCGTTAAT
TCGTTATCCCCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCT
CAAACATGTTCCTGGAAGGTATTTATTTNACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3779#0      TGCACGGGGAACTCGCCGTCCCGGCCTCACTCGGCCAGCCATGGAGCTCGACCTCCCGCC 60
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      GAAGCAACAAGCCCCGCCGCTCGCCGACCTCGCCGTTGCCATCCACCGGGCCGCCGAGGC 120
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      CACCACCGCGCTCTCCGCACCCTCCTCCTCTTCCCAAGCCGCCGCCGCCGCGGTGGTCGC 180
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      CCTCCGTGACGCCCACGCCGCTATAGGCGGCTTCCTCTATCGCCTCGACGTCTCAGTCCC 240
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      TGCCTCTTCTTCGTCCAGCGACGATCAGCCGATGGCGGACGGCTGCGAGGAGGAGGGGGA 300
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      GGGGGAGCAGCAGATGGTAGAGGAGGTGGAGGAGGGTCTCCGGGAGTGCGCCCTGCAGGG 360
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      GAGCAAGCGGCGGAAGCGGCCTGTGCCGCCGTCGTGGCCCCTAGGGCGCCGCTCGAGTGG 420
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      CGGTTGCGTGGTGCCGGAGGCCGCGCCGGCTCCTCTGGACGTGGAGGGGCGGCGGCGCGC 480
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      TGCCATGGATCTCTTGCTACAGTTCCATGGGTAGGATGAGTGCAGGGTTCATTGGCACAA 540
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      TACGAACGAAATGATGAGGCGCCTACTGAATAGTCCATACCAAGTTTGTAGGTCATACAC 600
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      TCGTGCTGTTCTTCACGAAGATATACACAAACATATCAAACAAACCACAAGCAAATAGGT 660
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      GAAATCACCAACCTTCCCAATACTGAGGCAGCTAGAAATCAACACTTCAGCAGTGAGTGT 720
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      GAGACAGAGCTAGTATCAAGCAGTACTCATCAACATAATGAGCCACTTAGCCTTACAGAT 780
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      TGTGTTATTTCCCAAAAAATAAAAAGTGAGATGAAAGACTCAGATTTGAGTCCCAAGATT 840
consensus_3779#1      ---------------------------------------------------CCCAAGATT 9
                                                                         *********

consensus_3779#0      GTTTTGTTTTTCAGTAAATGGGCTGAATCATTTGTCTCCTCAGGCGTTAATTCGTTATCC 900
consensus_3779#1      GTTTTGTTTTTNAGTAAATGGGCTGAATCATTTGTNTCCTCAGGCGTTAATTCGTTATCC 69
                      *********** *********************** ************************

consensus_3779#0      CCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGT 960
consensus_3779#1      CCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGT 129
                      ************************************************************

consensus_3779#0      TCCTGGAAGGTATTTATTTTACATCTAATATTTTTTA---------------------- 997
consensus_3779#1      TCCTGGAAGGTATTTATTTNACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 188
                      ******************* ***   ** *      *