cluster # 3793

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Oryza sativa
cluster # 3793 cluster # 3793 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3793#0 length = 595 sequences # 1

consensus_3793#1 length = 319 sequences # 1

consensusID : consensus_3793#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence

                              [CGCCGACGACGAGAGCGACTGCTCCGATGAGCGAATCCGGCAGGGTCACCGCCGGCGGAGGAAGGGGCGAGCTGCGGCCGCCGGAGCTGCCGCGGGACCCGGCGCTGGAGTTCCTGTCCCGGTCGTGGAGCGCGTCGGGCGCCGCCGACGTCTCCCGCCGCGCGCTCGCCGCCGCCGCCTTCCCGGCGGCGGCGGCGTCGGCCGCGGTCATCGCCGAGGACGTCTCCGGTGAGCTCGACGTCGACGGCTCCGCCTCCGGGAGCTCCTTCTCCTTCGCGTCGGCGGCCACCTCGCAGCTCATCATGGACAGGATCATGTCGCAATCGGAGGTGTCGCCGCTGACCTCCGGCCGCCTCTCACACAGCAGCGGCCCTCTCAACGGCGGCGGCTCGCTCTCCGACAGCCCACCGGTCTCGCCGGACGTCGACGACAGCAAGTTTTGCAGAGCGGTGAGCACGCCGAAGCCGCAGCCGTACCGCGGCGTCGTCGGCGGCGGCGGGAAGACGGTGGGGCGGTGGCTGAAGGAGAGGAAGGAGAAGAAGAAGGAGGAGGCGCGGGCGCACAACGCGCAGGTCCACGCCGCGGTGTCTGTGGC]

[+] EMBL CB632928             [CGCCGACGACGAGAGCGACTGCTCCGATGAGCGAATCCGGCAGGGTCACCGCCGGCGGAGGAAGGGGCGAGCTGCGGCCGCCGGAGCTGCCGCGGGACCCGGCGCTGGAGTTCCTGTCCCGGTCGTGGAGCGCGTCGGGCGCCGCCGACGTCTCCCGCCGCGCGCTCGCCGCCGCCGCCTTCCCGGCGGCGGCGGCGTCGGCCGCGGTCATCGCCGAGGACGTCTCCGGTGAGCTCGACGTCGACGGCTCCGCCTCCGGGAGCTCCTTCTCCTTCGCGTCGGCGGCCACCTCGCAGCTCATCATGGACAGGATCATGTCGCAATCGGAGGTGTCGCCGCTGACCTCCGGCCGCCTCTCACACAGCAGCGGCCCTCTCAACGGCGGCGGCTCGCTCTCCGACAGCCCACCGGTCTCGCCGGACGTCGACGACAGCAAGTTTTGCAGAGCGGTGAGCACGCCGAAGCCGCAGCCGTACCGCGGCGTCGTCGGCGGCGGCGGGAAGACGGTGGGGCGGTGGCTGAAGGAGAGGAAGGAGAAGAAGAAGGAGGAGGCGCGGGCGCACAACGCGCAGGTCCACGCCGCGGTGTCTGTGGC]




>consensus_3793#0
CGCCGACGACGAGAGCGACTGCTCCGATGAGCGAATCCGGCAGGGTCACCGCCGGCGGAG
GAAGGGGCGAGCTGCGGCCGCCGGAGCTGCCGCGGGACCCGGCGCTGGAGTTCCTGTCCC
GGTCGTGGAGCGCGTCGGGCGCCGCCGACGTCTCCCGCCGCGCGCTCGCCGCCGCCGCCT
TCCCGGCGGCGGCGGCGTCGGCCGCGGTCATCGCCGAGGACGTCTCCGGTGAGCTCGACG
TCGACGGCTCCGCCTCCGGGAGCTCCTTCTCCTTCGCGTCGGCGGCCACCTCGCAGCTCA
TCATGGACAGGATCATGTCGCAATCGGAGGTGTCGCCGCTGACCTCCGGCCGCCTCTCAC
ACAGCAGCGGCCCTCTCAACGGCGGCGGCTCGCTCTCCGACAGCCCACCGGTCTCGCCGG
ACGTCGACGACAGCAAGTTTTGCAGAGCGGTGAGCACGCCGAAGCCGCAGCCGTACCGCG
GCGTCGTCGGCGGCGGCGGGAAGACGGTGGGGCGGTGGCTGAAGGAGAGGAAGGAGAAGA
AGAAGGAGGAGGCGCGGGCGCACAACGCGCAGGTCCACGCCGCGGTGTCTGTGGC

consensusID : consensus_3793#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence

                              [TCACTTTCCATATAGACACTGAGAATTTACTCGTTTCTTGTTTCATGGAGCAGCAGGAGGTGTCGCCGCTGACCTCCGGCCGCCTCTCACACAGCAGCGGCCCTCTCAACGGCGGCGGCTCGCTCTCCGACAGCCCACCGGTCTCGCCGGACGTCTACGACAGCAAGTTTTGCAGAGCGGTGAGCACGCCTAAGCCGCAGCCGTACCGCGGCGTCGTCCGCGGAGGCGGGAAGACTGTGGGGCGGTGGCTGAATGACAGGAACGATAAAAAGAAGGAAGAAGCGCGGGCGCACAACGCGCACGTCCACGCCGCGGTGTC]

[+] EMBL CB653455             [TCACTTTCCATATAGACACTGAGAATTTACTCGTTTCTTGTTTCATGGAGCAGCAGGAGGTGTCGCCGCTGACCTCCGGCCGCCTCTCACACAGCAGCGGCCCTCTCAACGGCGGCGGCTCGCTCTCCGACAGCCCACCGGTCTCGCCGGACGTCTACGACAGCAAGTTTTGCAGAGCGGTGAGCACGCCTAAGCCGCAGCCGTACCGCGGCGTCGTCCGCGGAGGCGGGAAGACTGTGGGGCGGTGGCTGAATGACAGGAACGATAAAAAGAAGGAAGAAGCGCGGGCGCACAACGCGCACGTCCACGCCGCGGTGTC]




>consensus_3793#1
TCACTTTCCATATAGACACTGAGAATTTACTCGTTTCTTGTTTCATGGAGCAGCAGGAGG
TGTCGCCGCTGACCTCCGGCCGCCTCTCACACAGCAGCGGCCCTCTCAACGGCGGCGGCT
CGCTCTCCGACAGCCCACCGGTCTCGCCGGACGTCTACGACAGCAAGTTTTGCAGAGCGG
TGAGCACGCCTAAGCCGCAGCCGTACCGCGGCGTCGTCCGCGGAGGCGGGAAGACTGTGG
GGCGGTGGCTGAATGACAGGAACGATAAAAAGAAGGAAGAAGCGCGGGCGCACAACGCGC
ACGTCCACGCCGCGGTGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3793#0      CGCCGACGACGAGAGCGACTGCTCCGATGAGCGAATCCGGCAGGGTCACCGCCGGCGGAG 60
consensus_3793#1      ------------------------------------------------------------
                                                                                  

consensus_3793#0      GAAGGGGCGAGCTGCGGCCGCCGGAGCTGCCGCGGGACCCGGCGCTGGAGTTCCTGTCCC 120
consensus_3793#1      ------------------------------------------------------------
                                                                                  

consensus_3793#0      GGTCGTGGAGCGCGTCGGGCGCCGCCGACGTCTCCCGCCGCGCGCTCGCCGCCGCCGCCT 180
consensus_3793#1      ------------------------------------------------------------
                                                                                  

consensus_3793#0      TCCCGGCGGCGGCGGCGTCGGCCGCGGTCATCGCCGAGGACGTCTCCGGTGAGCTCGACG 240
consensus_3793#1      ------------------------------------------------------------
                                                                                  

consensus_3793#0      TCGACGGCTCCGCCTCCGGGAGCTCCTTCTCCTTCGCGTCGGCGGCCACCTCGCAGCTCA 300
consensus_3793#1      ---------------------------TCACTTTC-CAT--ATAGACACTGAGAATTTAC 30
                                                 ** * *** * *     * ***   * *  *  

consensus_3793#0      TCATGGACAGGATCATGTCGCAATCGGAGGTGTCGCCGCTGACCTCCGGCCGCCTCTCAC 360
consensus_3793#1      TCGTTTCTTGTTTCATGGAGCAGCAGGAGGTGTCGCCGCTGACCTCCGGCCGCCTCTCAC 90
                      ** *     *  *****  ***   ***********************************

consensus_3793#0      ACAGCAGCGGCCCTCTCAACGGCGGCGGCTCGCTCTCCGACAGCCCACCGGTCTCGCCGG 420
consensus_3793#1      ACAGCAGCGGCCCTCTCAACGGCGGCGGCTCGCTCTCCGACAGCCCACCGGTCTCGCCGG 150
                      ************************************************************

consensus_3793#0      ACGTCGACGACAGCAAGTTTTGCAGAGCGGTGAGCACGCCGAAGCCGCAGCCGTACCGCG 480
consensus_3793#1      ACGTCTACGACAGCAAGTTTTGCAGAGCGGTGAGCACGCCTAAGCCGCAGCCGTACCGCG 210
                      ***** ********************************** *******************

consensus_3793#0      GCGTCGTCGGCGGCGGCGGGAAGACGGTGGGGCGGTGGCTGAAGGAGAGGAAGGAGAAGA 540
consensus_3793#1      GCGTCGTCCGCGGAGGCGGGAAGACTGTGGGGCGGTGGCTGAATGACAGGAACGATAAAA 270
                      ******** **** *********** ***************** ** ***** ** ** *

consensus_3793#0      AGAAGGAGGAGGCGCGGGCGCACAACGCGCAGGTCCACGCCGCGGTGTCTGTGGC 595
consensus_3793#1      AGAAGGAAGAAGCGCGGGCGCACAACGCGCACGTCCACGCCGCGGTGTC------ 319
                      ******* ** ******************** *****************