cluster # 3795

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Oryza sativa
cluster # 3795 cluster # 3795 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3795#0 length = 356 sequences # 1

consensus_3795#1 length = 354 sequences # 1

consensusID : consensus_3795#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 356
fasta sequence

                              [ACCAACAGGAGAAGAGAAGAGGAGAGGAGGAAAAGGGAAATAAATAAAAAGGAGAGGAGAGGAGAAGGGAAGAGAAGCGAAGNGNGCCTTCTTCGCCGTGGGAATAATTTTNCGCTCGGGGGATCTTGATCTGAGGAGGAGGGGGTTGTTGGTGTTGGGGAGAGGGAGCGATCGGAGCCAGGGCGCGGTTCGCAGGCGGTGAGATTTGTGTTCCGGGACAAGCCATGAGCAGCGCAACCACCGGTTGTTTAACCAAGCAACCCCCCTGTAAATTGAAAGCAACCGAAGCGAANCCANAAGAAATGGTTTTTCAGAAGAGGTCATCGCTGGAGATGGAGTCGGGAGGCGGAAGCACG]

[+] EMBL OSS13802A            [ACCAACAGGAGAAGAGAAGAGGAGAGGAGGAAAAGGGAAATAAATAAAAAGGAGAGGAGAGGAGAAGGGAAGAGAAGCGAAGNGNGCCTTCTTCGCCGTGGGAATAATTTTNCGCTCGGGGGATCTTGATCTGAGGAGGAGGGGGTTGTTGGTGTTGGGGAGAGGGAGCGATCGGAGCCAGGGCGCGGTTCGCAGGCGGTGAGATTTGTGTTCCGGGACAAGCCATGAGCAGCGCAACCACCGGTTGTTTAACCAAGCAACCCCCCTGTAAATTGAAAGCAACCGAAGCGAANCCANAAGAAATGGTTTTTCAGAAGAGGTCATCGCTGGAGATGGAGTCGGGAGGCGGAAGCACG]




>consensus_3795#0
ACCAACAGGAGAAGAGAAGAGGAGAGGAGGAAAAGGGAAATAAATAAAAAGGAGAGGAGA
GGAGAAGGGAAGAGAAGCGAAGNGNGCCTTCTTCGCCGTGGGAATAATTTTNCGCTCGGG
GGATCTTGATCTGAGGAGGAGGGGGTTGTTGGTGTTGGGGAGAGGGAGCGATCGGAGCCA
GGGCGCGGTTCGCAGGCGGTGAGATTTGTGTTCCGGGACAAGCCATGAGCAGCGCAACCA
CCGGTTGTTTAACCAAGCAACCCCCCTGTAAATTGAAAGCAACCGAAGCGAANCCANAAG
AAATGGTTTTTCAGAAGAGGTCATCGCTGGAGATGGAGTCGGGAGGCGGAAGCACG

consensusID : consensus_3795#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 354
fasta sequence

                              [NCNCNANAGCCCGTGATCTCCANGTCCAGGGTTTTTTGGGATTCTCAATTTTNTTGCTAATTAATTGCACTGTTAACCACGATCGTTCTCTGTTTAATTAATCTCGGAAGGGTTTATCCGAGATTTATCCCAAAGTTCTTCTTGCGGAGATCCCAATGAAATGATTTCCTTCCTTCTTTGTACCAACTGGTTTCCTTCTTGCCAATTGCTGATGTGGTTTTCAACAATTCCTGCGCAGATTTGTGTTCCGGGACAAGCCATGAGCAGCGCAACCACCGGTTGTTAACCAAGCAACCCCCCTGTAAATTGAAAGCAACCGAAGCGAGGGATAAAGAAATNGTTTTTCAGAAGAGG]

[+] EMBL OSC503               [NCNCNANAGCCCGTGATCTCCANGTCCAGGGTTTTTTGGGATTCTCAATTTTNTTGCTAATTAATTGCACTGTTAACCACGATCGTTCTCTGTTTAATTAATCTCGGAAGGGTTTATCCGAGATTTATCCCAAAGTTCTTCTTGCGGAGATCCCAATGAAATGATTTCCTTCCTTCTTTGTACCAACTGGTTTCCTTCTTGCCAATTGCTGATGTGGTTTTCAACAATTCCTGCGCAGATTTGTGTTCCGGGACAAGCCATGAGCAGCGCAACCACCGGTTGTTAACCAAGCAACCCCCCTGTAAATTGAAAGCAACCGAAGCGAGGGATAAAGAAATNGTTTTTCAGAAGAGG]




>consensus_3795#1
NCNCNANAGCCCGTGATCTCCANGTCCAGGGTTTTTTGGGATTCTCAATTTTNTTGCTAA
TTAATTGCACTGTTAACCACGATCGTTCTCTGTTTAATTAATCTCGGAAGGGTTTATCCG
AGATTTATCCCAAAGTTCTTCTTGCGGAGATCCCAATGAAATGATTTCCTTCCTTCTTTG
TACCAACTGGTTTCCTTCTTGCCAATTGCTGATGTGGTTTTCAACAATTCCTGCGCAGAT
TTGTGTTCCGGGACAAGCCATGAGCAGCGCAACCACCGGTTGTTAACCAAGCAACCCCCC
TGTAAATTGAAAGCAACCGAAGCGAGGGATAAAGAAATNGTTTTTCAGAAGAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3795#0      ----ACCAACAGGAGAAGAGAAGAGGAGAGGAGGAAAAGGGAAATAAATAAAAAGGAGAG 56
consensus_3795#1      NCNCNANAGCCCGTGATCTCCANGTCCAGGGTTTTTTGGGATTCTCAATTTTNTTGCTAA 60
                             * *  * **     *       **       **    * ***      *  * 

consensus_3795#0      GAGAGGAGAAGGGAAG--AGAAGCGAAGNGNGCCTTCTTCGCCGTGGGAATAATTTTNCG 114
consensus_3795#1      TTAATTGCACTGTTAACCACGATCGTTCTCTGTTTAATTAATCTCGGAAGGGTTTATCCG 120
                         *    *  *  *   *  * **      *  *  **   *  ** *    ** * **

consensus_3795#0      -------CTCGGGGGATCTT--------GATCTGAGGAGGAGGGGGTTGTTGGTGTTGGG 159
consensus_3795#1      AGATTTATCCCAAAGTTCTTCTTGCGGAGATCCCAATGAAATGATTTCCTTCCTTCTTTG 180
                               *    * ****        ****  *     * *   *  **  *  *  *

consensus_3795#0      GAGAG---GGAGCGATCGGAGCCAG-----GGCGCGGTTCGCAGG-----CGGTG-AGAT 205
consensus_3795#1      TACCAACTGGTTTCCTTCTTGCCAATTGCTGATGTGGTTTTCAACAATTCCTGCGCAGAT 240
                       *      **     *    ****      *  * ****  **       * * * ****

consensus_3795#0      TTGTGTTCCGGGACAAGCCATGAGCAGCGCAACCACCGGTTGTTTAACCAAGCAACCCCC 265
consensus_3795#1      TTGTGTTCCGGGACAAGCCATGAGCAGCGCAACCACCGGTTGTT-AACCAAGCAACCCCC 299
                      ******************************************** ***************

consensus_3795#0      CTGTAAATTGAAAGCAACCGAAGCGAANCCANAAGAAATGGTTTTTCAGAAGAGGTCATC 325
consensus_3795#1      CTGTAAATTGAAAGCAACCGAAGCGAGGGATAAAGAAATNGTTTTTCAGAAGAGG----- 354
                      **************************      ******* ***************     

consensus_3795#0      GCTGGAGATGGAGTCGGGAGGCGGAAGCACG 356
consensus_3795#1      -------------------------------