cluster # 3799

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Oryza sativa
cluster # 3799 cluster # 3799 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3799#0 length = 1445 sequences # 1

consensus_3799#1 length = 498 sequences # 1

consensusID : consensus_3799#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1445
fasta sequence

                              [CCGCTGCTCCTTCCCCCTCCCCCCACCACCGGCGAAACCCAGACCCACGCCGATCCCTTGCGCGCCGCCACCAGGGCCCTCTCCGCCGCTCCACAGCGTCGCCAGCTGATAGTCCCGAGGAACCCCCCCCCCCCCCGCCCCCCGGGTATCGTCCGCGGCTTCCACCGATCCCTCTCCCCTTCTCGCATGCACCGCGCCGCCACACATCCTTCTTAGATACCTAGACCGAGCGCTCGCCATCGCCGTCACGCCGATCCTCCGCCTCTCGTGTTGCCGACGCCCCGCCATTGCCCGCATCGATCGGCGCCACACATAGGTGCTGCCTTCGTGGCTTAGTGCCGCCTGGGAGACGATATCCGCGAAGTACGTGATGCACTGATGCACCCCTCTGCTGATGACCACCGGGACAACCTATGCGGAGCTGCGTAGCACGCCCCCCTTTCCCCACCGCTGCCTCTTTCCCCAACGACTTCACTGTTTTCTAGATCTGTGACGCTTGGATGTTGACGACGACGCTGTCACGGGCTCACGGCGCTCGGCCATGTCTGGGATGTGCAAGCCAGTTTCCCCTGCTCGATGGGCGTCATGTCCAGGGATAGCTGATGCGGCAGGACAACTGGTTAAGGGAAATATAAAGCACCTGCTGCATATGAGGAGCACCAAAAGTAATATGTAGAAGGCCGTGTGTGGAATTTTGCTACAAACGCAAGATTTCTGCAGTGGAATTTGGTTGTGTTTCTTCATCTACTGGTTGGATGCGGAAGCTTATCATGCAGTAGCCAAATTGCTGAAAAGTAGAAACATTGGTATTCAGGCGAAGGTATTCCAACTTTACTTTTGGGTAGTTTGTGAATATGGGTTCATTTATGCAAACCAGAAGTGGAAGTGGGACTCATAAGATATTAGTGTATAATCTGCGATACATGTACTTGAAGTGGAAGTGAATGGCATAATGGCTTTGCTTAAAATTAGTTTCAATATGGCATGATACGAGATGCCATTGTCAGGACACTTATTTAAGCATGCCATTGCATGATATATATATCTGTTCTTCACATCCAGTACACCGGCAGGGGAAGAAGAGTTATATGCAGCCCATTTAATTTCTAAGATTTTTGTAGACAGCATCAGATAGTACTGTTTGTTGTTTGCCATGGAGGTGCGGCAGCAGGGCAAGTAGGAACACATGTATACTCCATTCCAAACTTATAACTTCACTAGGCCATGCAAACTTGGATAAAATAAGTTAAGTATTGGATGGATGGAAGTTGCTTCTATCTATACTATAAAAAACCCTTGTAGCTGATTCGGTGTGGGTTGTTGCGCCCCTCGAAGGTACTCTTGGCAGCCACCGTGTATTGATCTGATCGTCTTGATCACAGACACTGAAACTTTATAGCGGTGACTTTTTTCGGTGGATTAATTTGTTAAATCAAATACCACAT]

[+] EMBL AK109918             [CCGCTGCTCCTTCCCCCTCCCCCCACCACCGGCGAAACCCAGACCCACGCCGATCCCTTGCGCGCCGCCACCAGGGCCCTCTCCGCCGCTCCACAGCGTCGCCAGCTGATAGTCCCGAGGAACCCCCCCCCCCCCCGCCCCCCGGGTATCGTCCGCGGCTTCCACCGATCCCTCTCCCCTTCTCGCATGCACCGCGCCGCCACACATCCTTCTTAGATACCTAGACCGAGCGCTCGCCATCGCCGTCACGCCGATCCTCCGCCTCTCGTGTTGCCGACGCCCCGCCATTGCCCGCATCGATCGGCGCCACACATAGGTGCTGCCTTCGTGGCTTAGTGCCGCCTGGGAGACGATATCCGCGAAGTACGTGATGCACTGATGCACCCCTCTGCTGATGACCACCGGGACAACCTATGCGGAGCTGCGTAGCACGCCCCCCTTTCCCCACCGCTGCCTCTTTCCCCAACGACTTCACTGTTTTCTAGATCTGTGACGCTTGGATGTTGACGACGACGCTGTCACGGGCTCACGGCGCTCGGCCATGTCTGGGATGTGCAAGCCAGTTTCCCCTGCTCGATGGGCGTCATGTCCAGGGATAGCTGATGCGGCAGGACAACTGGTTAAGGGAAATATAAAGCACCTGCTGCATATGAGGAGCACCAAAAGTAATATGTAGAAGGCCGTGTGTGGAATTTTGCTACAAACGCAAGATTTCTGCAGTGGAATTTGGTTGTGTTTCTTCATCTACTGGTTGGATGCGGAAGCTTATCATGCAGTAGCCAAATTGCTGAAAAGTAGAAACATTGGTATTCAGGCGAAGGTATTCCAACTTTACTTTTGGGTAGTTTGTGAATATGGGTTCATTTATGCAAACCAGAAGTGGAAGTGGGACTCATAAGATATTAGTGTATAATCTGCGATACATGTACTTGAAGTGGAAGTGAATGGCATAATGGCTTTGCTTAAAATTAGTTTCAATATGGCATGATACGAGATGCCATTGTCAGGACACTTATTTAAGCATGCCATTGCATGATATATATATCTGTTCTTCACATCCAGTACACCGGCAGGGGAAGAAGAGTTATATGCAGCCCATTTAATTTCTAAGATTTTTGTAGACAGCATCAGATAGTACTGTTTGTTGTTTGCCATGGAGGTGCGGCAGCAGGGCAAGTAGGAACACATGTATACTCCATTCCAAACTTATAACTTCACTAGGCCATGCAAACTTGGATAAAATAAGTTAAGTATTGGATGGATGGAAGTTGCTTCTATCTATACTATAAAAAACCCTTGTAGCTGATTCGGTGTGGGTTGTTGCGCCCCTCGAAGGTACTCTTGGCAGCCACCGTGTATTGATCTGATCGTCTTGATCACAGACACTGAAACTTTATAGCGGTGACTTTTTTCGGTGGATTAATTTGTTAAATCAAATACCACAT]




>consensus_3799#0
CCGCTGCTCCTTCCCCCTCCCCCCACCACCGGCGAAACCCAGACCCACGCCGATCCCTTG
CGCGCCGCCACCAGGGCCCTCTCCGCCGCTCCACAGCGTCGCCAGCTGATAGTCCCGAGG
AACCCCCCCCCCCCCCGCCCCCCGGGTATCGTCCGCGGCTTCCACCGATCCCTCTCCCCT
TCTCGCATGCACCGCGCCGCCACACATCCTTCTTAGATACCTAGACCGAGCGCTCGCCAT
CGCCGTCACGCCGATCCTCCGCCTCTCGTGTTGCCGACGCCCCGCCATTGCCCGCATCGA
TCGGCGCCACACATAGGTGCTGCCTTCGTGGCTTAGTGCCGCCTGGGAGACGATATCCGC
GAAGTACGTGATGCACTGATGCACCCCTCTGCTGATGACCACCGGGACAACCTATGCGGA
GCTGCGTAGCACGCCCCCCTTTCCCCACCGCTGCCTCTTTCCCCAACGACTTCACTGTTT
TCTAGATCTGTGACGCTTGGATGTTGACGACGACGCTGTCACGGGCTCACGGCGCTCGGC
CATGTCTGGGATGTGCAAGCCAGTTTCCCCTGCTCGATGGGCGTCATGTCCAGGGATAGC
TGATGCGGCAGGACAACTGGTTAAGGGAAATATAAAGCACCTGCTGCATATGAGGAGCAC
CAAAAGTAATATGTAGAAGGCCGTGTGTGGAATTTTGCTACAAACGCAAGATTTCTGCAG
TGGAATTTGGTTGTGTTTCTTCATCTACTGGTTGGATGCGGAAGCTTATCATGCAGTAGC
CAAATTGCTGAAAAGTAGAAACATTGGTATTCAGGCGAAGGTATTCCAACTTTACTTTTG
GGTAGTTTGTGAATATGGGTTCATTTATGCAAACCAGAAGTGGAAGTGGGACTCATAAGA
TATTAGTGTATAATCTGCGATACATGTACTTGAAGTGGAAGTGAATGGCATAATGGCTTT
GCTTAAAATTAGTTTCAATATGGCATGATACGAGATGCCATTGTCAGGACACTTATTTAA
GCATGCCATTGCATGATATATATATCTGTTCTTCACATCCAGTACACCGGCAGGGGAAGA
AGAGTTATATGCAGCCCATTTAATTTCTAAGATTTTTGTAGACAGCATCAGATAGTACTG
TTTGTTGTTTGCCATGGAGGTGCGGCAGCAGGGCAAGTAGGAACACATGTATACTCCATT
CCAAACTTATAACTTCACTAGGCCATGCAAACTTGGATAAAATAAGTTAAGTATTGGATG
GATGGAAGTTGCTTCTATCTATACTATAAAAAACCCTTGTAGCTGATTCGGTGTGGGTTG
TTGCGCCCCTCGAAGGTACTCTTGGCAGCCACCGTGTATTGATCTGATCGTCTTGATCAC
AGACACTGAAACTTTATAGCGGTGACTTTTTTCGGTGGATTAATTTGTTAAATCAAATAC
CACAT

consensusID : consensus_3799#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 498
fasta sequence

                              [GCAGCCACCGTGTATTGATCCGATCCATGTGTGACCCTCTTGATCCCAGGCACTAAAAATTTATAGCGGTGACTTTTTTCGGTGGATTAATTTGTTAAATCAAATACCACATTTATTAAGGTAAGGTCAGGAAGGCTGTGGCTTCCACTTGATTGGTACTCCATAATAGTGCCAAGTAAAATCAGTCTCACTCTGTAGTGGTAGTTGAATGAAGTTCAGTTCCTTACAGTATTTGTTGCTTTTCAGATTTTTGTTTACTTCTCATTCTGTCAGACCAAATCATTCTATAGAAGAAACAATAGCACATATTTTATTAGCCTGTACAGAAACTTGCCTTTGCAGTGACATGGAATGTACTGGTACAATCAATACATAGTGTAATGAGATGTATATTTAAGATTAGGGCCTGGAATGTGTGAGAAGTAAAGTGGATTGGGACATGGTCTGAATCCAACGATCTGAAAATGAATGTTAGGGAAGATAAACATACAAATATTA]

[+] EMBL CF304130             [GCAGCCACCGTGTATTGATCCGATCCATGTGTGACCCTCTTGATCCCAGGCACTAAAAATTTATAGCGGTGACTTTTTTCGGTGGATTAATTTGTTAAATCAAATACCACATTTATTAAGGTAAGGTCAGGAAGGCTGTGGCTTCCACTTGATTGGTACTCCATAATAGTGCCAAGTAAAATCAGTCTCACTCTGTAGTGGTAGTTGAATGAAGTTCAGTTCCTTACAGTATTTGTTGCTTTTCAGATTTTTGTTTACTTCTCATTCTGTCAGACCAAATCATTCTATAGAAGAAACAATAGCACATATTTTATTAGCCTGTACAGAAACTTGCCTTTGCAGTGACATGGAATGTACTGGTACAATCAATACATAGTGTAATGAGATGTATATTTAAGATTAGGGCCTGGAATGTGTGAGAAGTAAAGTGGATTGGGACATGGTCTGAATCCAACGATCTGAAAATGAATGTTAGGGAAGATAAACATACAAATATTA]




>consensus_3799#1
GCAGCCACCGTGTATTGATCCGATCCATGTGTGACCCTCTTGATCCCAGGCACTAAAAAT
TTATAGCGGTGACTTTTTTCGGTGGATTAATTTGTTAAATCAAATACCACATTTATTAAG
GTAAGGTCAGGAAGGCTGTGGCTTCCACTTGATTGGTACTCCATAATAGTGCCAAGTAAA
ATCAGTCTCACTCTGTAGTGGTAGTTGAATGAAGTTCAGTTCCTTACAGTATTTGTTGCT
TTTCAGATTTTTGTTTACTTCTCATTCTGTCAGACCAAATCATTCTATAGAAGAAACAAT
AGCACATATTTTATTAGCCTGTACAGAAACTTGCCTTTGCAGTGACATGGAATGTACTGG
TACAATCAATACATAGTGTAATGAGATGTATATTTAAGATTAGGGCCTGGAATGTGTGAG
AAGTAAAGTGGATTGGGACATGGTCTGAATCCAACGATCTGAAAATGAATGTTAGGGAAG
ATAAACATACAAATATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3799#0      CCGCTGCTCCTTCCCCCTCCCCCCACCACCGGCGAAACCCAGACCCACGCCGATCCCTTG 60
consensus_3799#1      ------------------------------------------------------------
                                                                                  

consensus_3799#0      CGCGCCGCCACCAGGGCCCTCTCCGCCGCTCCACAGCGTCGCCAGCTGATAGTCCCGAGG 120
consensus_3799#1      ------------------------------------------------------------
                                                                                  

consensus_3799#0      AACCCCCCCCCCCCCCGCCCCCCGGGTATCGTCCGCGGCTTCCACCGATCCCTCTCCCCT 180
consensus_3799#1      ------------------------------------------------------------
                                                                                  

consensus_3799#0      TCTCGCATGCACCGCGCCGCCACACATCCTTCTTAGATACCTAGACCGAGCGCTCGCCAT 240
consensus_3799#1      ------------------------------------------------------------
                                                                                  

consensus_3799#0      CGCCGTCACGCCGATCCTCCGCCTCTCGTGTTGCCGACGCCCCGCCATTGCCCGCATCGA 300
consensus_3799#1      ------------------------------------------------------------
                                                                                  

consensus_3799#0      TCGGCGCCACACATAGGTGCTGCCTTCGTGGCTTAGTGCCGCCTGGGAGACGATATCCGC 360
consensus_3799#1      ------------------------------------------------------------
                                                                                  

consensus_3799#0      GAAGTACGTGATGCACTGATGCACCCCTCTGCTGATGACCACCGGGACAACCTATGCGGA 420
consensus_3799#1      ------------------------------------------------------------
                                                                                  

consensus_3799#0      GCTGCGTAGCACGCCCCCCTTTCCCCACCGCTGCCTCTTTCCCCAACGACTTCACTGTTT 480
consensus_3799#1      ------------------------------------------------------------
                                                                                  

consensus_3799#0      TCTAGATCTGTGACGCTTGGATGTTGACGACGACGCTGTCACGGGCTCACGGCGCTCGGC 540
consensus_3799#1      ------------------------------------------------------------
                                                                                  

consensus_3799#0      CATGTCTGGGATGTGCAAGCCAGTTTCCCCTGCTCGATGGGCGTCATGTCCAGGGATAGC 600
consensus_3799#1      ------------------------------------------------------------
                                                                                  

consensus_3799#0      TGATGCGGCAGGACAACTGGTTAAGGGAAATATAAAGCACCTGCTGCATATGAGGAGCAC 660
consensus_3799#1      ------------------------------------------------------------
                                                                                  

consensus_3799#0      CAAAAGTAATATGTAGAAGGCCGTGTGTGGAATTTTGCTACAAACGCAAGATTTCTGCAG 720
consensus_3799#1      ------------------------------------------------------------
                                                                                  

consensus_3799#0      TGGAATTTGGTTGTGTTTCTTCATCTACTGGTTGGATGCGGAAGCTTATCATGCAGTAGC 780
consensus_3799#1      ------------------------------------------------------------
                                                                                  

consensus_3799#0      CAAATTGCTGAAAAGTAGAAACATTGGTATTCAGGCGAAGGTATTCCAACTTTACTTTTG 840
consensus_3799#1      ------GCAGCCACCGTGTATTGATCCGATCCATGTGTGACCCTCTTGATCCCAGGCACT 54
                            ** *  *    * *    *   ** ** * *      *    *    *      

consensus_3799#0      GGTAGTTTGTGAATATGGGTTCATTTATGCAAACCAGAAGTGGAAGTGGGACTCATAAGA 900
consensus_3799#1      AAAAATTTATAGCGGTGACTTT-TTTCGGTGGATTAATTTGTTAAATCAAATACCACATT 113
                         * *** *     **  **  ***  *   *  *       ** *   *  *   *  

consensus_3799#0      TATTAGTGTATAATCTGCGATACATGTACTTGAAGTGGAAGTGAATGGCATAATGGCTTT 960
consensus_3799#1      TATTAAGGTAAGGTCAGGAAGGCTGTGGCTTCCACTTGATTGGTACTCCATAATAGTGCC 173
                      *****  ***   ** *  *  *     ***  * * **   * *   ****** *    

consensus_3799#0      GCTTAAAATTAGTTTCAATATGGCATGATACGAGATGCCATTGTCAGGACACTTATTTAA 1020
consensus_3799#1      AAGTAAAATCAGTCTCACTCTGTAGTGGTAGTTGA-ATGAAGTTCAG----TTCCTTACA 228
                         ****** *** *** * **   ** **   **    *   ****     *  **  *

consensus_3799#0      GCATGCCATTGCATGATATATATATCTGTTCTTCACATCCAGTACACCGGCAGGGGAAGA 1080
consensus_3799#1      GTAT-TTGTTGCTTTTCAGATTTTTGTTTACTTCTCATTCTGT-------CAGACCAA-- 278
                      * **    **** *   * ** * * * * **** *** * **       ***   **  

consensus_3799#0      AGAGTTATATGCAGCCCATTTAATTTCTAAGATTTTTGTAGACAGCATCAGATAGTACTG 1140
consensus_3799#1      ATCATTCTATAGAAGAAAC--AATAGCACATATTTTATTAGCCTGTA-CAGAAACTTGCC 335
                      *   ** ***  *    *   ***  *  * *****  *** * * * **** * *    

consensus_3799#0      TTTGTTGTTTGCCATGGAGGTGCGGCAGCAGGGCAAGTAGGAACACATGTATACTCCATT 1200
consensus_3799#1      TTTGCAGT--GACATGGAA-TGTACTGGTACAATCAATA----CATA-GTGTAATGAGAT 387
                      ****  **  * ******  **     * *     * **    ** * ** ** *    *

consensus_3799#0      CCAAACTTATAACTTCACTAGGCCATGCAAACTTGGATAAAATAAGTTAAGTATTGGATG 1260
consensus_3799#1      GTATATTTAAGAT-----TAGGGCCTGGAATGTGTGAGAAGTAAAGTGGATTGGGACATG 442
                        * * ***  *      **** * ** **  *  ** **   ****  * *     ***

consensus_3799#0      GATGGAAGTTGCTTCTATCTATACTATAAAAAACCCTTGTAGCTGATTCGGTGTGGGTTG 1320
consensus_3799#1      GTCTGAA------TCCAACGAT-CTGAAAATGAATGTTAGGGAAGATAAACATACAAATA 495
                      *   ***      ** * * ** **  ***  *   **   *  ***           * 

consensus_3799#0      TTGCGCCCCTCGAAGGTACTCTTGGCAGCCACCGTGTATTGATCTGATCGTCTTGATCAC 1380
consensus_3799#1      TTA--------------------------------------------------------- 498
                      **                                                          

consensus_3799#0      AGACACTGAAACTTTATAGCGGTGACTTTTTTCGGTGGATTAATTTGTTAAATCAAATAC 1440
consensus_3799#1      ------------------------------------------------------------
                                                                                  

consensus_3799#0      CACAT 1445
consensus_3799#1      -----