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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_38#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1523 fasta sequence
[ACTCACTCACCTCACCTCTGCCTCTGCTCTTCCTCCAAGAACCTAACCACGCCCACCGCCCACCACGGTGGCTCGCCGGCGCCGGCCGCCGCGGATCACGTTCCAGCCCCAGCTCAGCTCGGAGGTAGAGCATGTTAATGCCATTCTGGAACAAGTATATGTGAAGGGTTTCTTGGTCAAATTTCTGGAATACTTTGATGGAATGCAACAGAGAGGAGGCCTTCAGGGCCAGAGAAATTGCTGTAAAGAAGCTGGAAAATAGAGACTTTGTCGGCGCCCGCAAGATCGCGATTAAAGCTCAAAGGCTTTTTCCTGAGCTTGAGAACATCTCCCAGCTGTTAATTATCTGTGAAGTTCTTTCTTCAGCTGAGGCAAAGATCTCTGGAGAGTTGGATTGGTATGGTGTTCTTCAGGTGGATAAAATGGCAGACGAAACAGTAATAAGAAGGCAATACAACATACTTTCGTATCGGCTTCATCCTGATAATAATACTCTGTTTGGTGCCGAAGCCGCATTCAGGTTTGTTTCAGAAGCTCATGCAATATTGAGTGATCATGTGAAGAGGTCTCTGTATGACACCAAAAGACAGTGTGCTTCAAGAGAAGTGGCCAAGGAGGCTACACAGCCACCAAACAAGACTGATTCAAACATAAGCAATGTGGCTGGATCCATGACACCATCTGCTTCTGTGCTTGTATTCTGGACAATATGTCCGCATTGTCAGAAGCGATTTCTGTACTACCAACGGAACTTTTTGGCCCGCTGCAGTGATTGTGGTAAGAGGTTCTTCGCAATCAAACTGCATGAGCAGTCTGTTCCCTCGAGAATCCTATCAACTGCTGCAAAAAAGTCTCAGCTTTCAACGTCAGAAATGTTATCATTTCAACGAAGTAGTGTCCCCAATCAGCATCAACAAGGTAAATGCTTGGTTACAAGAAGGCGAGGCCATTCAATTTTCAGCAATGAAGCAAACTAAATCTCACATCTGCGCTTTTGACAATGATAAGCCTGGAACTTTGGTACCAAAGAGTTCTGATCTTAAGTCCATCTCAGTTAAGAATTTGACTAGAGAAAGTGCACCTGCAGAGGAAAATGCTGCAGAATCATCCAGTCTTCAGATATTGGGTAAGAGAAAGCTTTATGTTACCTCTGACAGCAGCCATGGTATGAACTCCAATATTAAGAGGCAAAGGAAGTATACTTGTCCATCCGATTCTGATTCGAGTAATGAGCAGATATGTAATGATGATGTTGCTGTTCCTGATAATCAATCTACTGGACAGAATGTTCCCATCGAAGTGGACAGTGAAGAGGAAAGAAATGCAAGACATGGAAGCAACCAACAAACTTGTAAGAAAAATGTTACTGATACTGCTTCTCAGAAGTCTGTCAATTCGGTGATTGCCTACCCTTATCCAGACTTTGATTTTTGCAAGTCCAGAGATGCTGAAGAAACTGATGAATCCATAAAACAATATGGCTGGGCTGGTGACATGGCAGGTAAAGGCCTGGTGACAAGAAG]
[+] EMBL AK121330 [ACTCACTCACCTCACCTCTGCCTCTGCTCTTCCTCCAAGAACCTAACCACGCCCACCGCCCACCACGGTGGCTCGCCGGCGCCGGCCGCCGCGGATCACGTTCCAGCCCCAGCTCAGCTCGGAGGTAGAGCATGTTAATGCCATTCTGGAACAAGTATATGTGAAGGGTTTCTTGGTCAAATTTCTGGAATACTTTGATGGAATGCAACAGAGAGGAGGCCTTCAGGGCCAGAGAAATTGCTGTAAAGAAGCTGGAAAATAGAGACTTTGTCGGCGCCCGCAAGATCGCGATTAAAGCTCAAAGGCTTTTTCCTGAGCTTGAGAACATCTCCCAGCTGTTAATTATCTGTGAAGTTCTTTCTTCAGCTGAGGCAAAGATCTCTGGAGAGTTGGATTGGTATGGTGTTCTTCAGGTGGATAAAATGGCAGACGAAACAGTAATAAGAAGGCAATACAACATACTTTCGTATCGGCTTCATCCTGATAATAATACTCTGTTTGGTGCCGAAGCCGCATTCAGGTTTGTTTCAGAAGCTCATGCAATATTGAGTGATCATGTGAAGAGGTCTCTGTATGACACCAAAAGACAGTGTGCTTCAAGAGAAGTGGCCAAGGAGGCTACACAGCCACCAAACAAGACTGATTCAAACATAAGCAATGTGGCTGGATCCATGACACCATCTGCTTCTGTGCTTGTATTCTGGACAATATGTCCGCATTGTCAGAAGCGATTTCTGTACTACCAACGGAACTTTTTGGCCCGCTGCAGTGATTGTGGTAAGAGGTTCTTCGCAATCAAACTGCATGAGCAGTCTGTTCCCTCGAGAATCCTATCAACTGCTGCAAAAAAGTCTCAGCTTTCAACGTCAGAAATGTTATCATTTCAACGAAGTAGTGTCCCCAATCAGCATCAACAAGGTAAATGCTTGGTTACAAGAAGGCGAGGCCATTCAATTTTCAGCAATGAAGCAAACTAAATCTCACATCTGCGCTTTTGACAATGATAAGCCTGGAACTTTGGTACCAAAGAGTTCTGATCTTAAGTCCATCTCAGTTAAGAATTTGACTAGAGAAAGTGCACCTGCAGAGGAAAATGCTGCAGAATCATCCAGTCTTCAGATATTGGGTAAGAGAAAGCTTTATGTTACCTCTGACAGCAGCCATGGTATGAACTCCAATATTAAGAGGCAAAGGAAGTATACTTGTCCATCCGATTCTGATTCGAGTAATGAGCAGATATGTAATGATGATGTTGCTGTTCCTGATAATCAATCTACTGGACAGAATGTTCCCATCGAAGTGGACAGTGAAGAGGAAAGAAATGCAAGACATGGAAGCAACCAACAAACTTGTAAGAAAAATGTTACTGATACTGCTTCTCAGAAGTCTGTCAATTCGGTGATTGCCTACCCTTATCCAGACTTTGATTTTTGCAAGTCCAGAGATGCTGAAGAAACTGATGAATCCATAAAACAATATGGCTGGGCTGGTGACATGGCAGGTAAAGGCCTGGTGACAAGAAG]
consensusID : consensus_38#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 954 fasta sequence
[TGTGGGAATTTCTAGCCCCCACAGCGAACGTAGTGCCTTTTTCTCAAAGCTGTTTTAATAATATAATAGAATAATAGATAGATATATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATGTCCGCATTGTCAGAAGCAATCTCTGTACTACCAACGGAACTTTTTGGCCCGCTGCAATGATTGTGGTAAGTTCTTTGCAATCAAACTGCGTGAGCAGTCTGTGCCCTCAAGAATCCTATCAACTGCTGCAAAAAGGTCTCAGCTTTCACCGTCAGAAATGTTCTCATTTCAACGAAGTAGTGTCCCCAATCAGCATGGTAATCAGCATCAACAAGGTAAATGCTTGGTGACAAGAAGCGAGGCCATTCAATTTTCAGCAATGAAGCAAACTAAATCTCACATCTGCTCTTCTGACAATGATAAGCCTGGAACTTTGGTACCAAAGAGTTCTGATCTAAACTCCATCTCTGTTAAGAATTTGACTAGAGAAAGTGCACCTGCAGAGGAAAATGCTGCAGAATCATCCAGTTTTCAGATATTGGGTAAGAGAAAGCTCTATGTTACCTCTGACAGCAGCCATGGTATGAACTCCAATATTAAGAGGCAAAGGAAGTATATTTGTCCATCCGATTCTGATTCGAGTAATGAGCAGATATGTAATGATGATGTTGCTGTTCCTGATAATCAATCTACTGGACAGAATGTTCCCATCGAAGTGGACAGTGAAGAGGAAGGAAATGCAAGACATGGAGGCAACCAACAAACTTGTCAGAAAAATGTTAATGATACTGCTGCTCAGAAGTATCTCAATTCAGTGATTGCCTACCCTTATCCAGACTTTGATTTTGGCAAATCCAGAGATACTGAAGAAACTGATGAATCCATAAAACAGTATGGCTGGGCTGGTGACATGGAAGGTAAAGGCCTGGTGACAAGAAGT]
[-] EMBL AK064591 [TGTGGGAATTTCTAGCCCCCACAGCGAACGTAGTGCCTTTTTCTCAAAGCTGTTTTAATAATATAATAGAATAATAGATAGATATATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATGTCCGCATTGTCAGAAGCAATCTCTGTACTACCAACGGAACTTTTTGGCCCGCTGCAATGATTGTGGTAAGTTCTTTGCAATCAAACTGCGTGAGCAGTCTGTGCCCTCAAGAATCCTATCAACTGCTGCAAAAAGGTCTCAGCTTTCACCGTCAGAAATGTTCTCATTTCAACGAAGTAGTGTCCCCAATCAGCATGGTAATCAGCATCAACAAGGTAAATGCTTGGTGACAAGAAGCGAGGCCATTCAATTTTCAGCAATGAAGCAAACTAAATCTCACATCTGCTCTTCTGACAATGATAAGCCTGGAACTTTGGTACCAAAGAGTTCTGATCTAAACTCCATCTCTGTTAAGAATTTGACTAGAGAAAGTGCACCTGCAGAGGAAAATGCTGCAGAATCATCCAGTTTTCAGATATTGGGTAAGAGAAAGCTCTATGTTACCTCTGACAGCAGCCATGGTATGAACTCCAATATTAAGAGGCAAAGGAAGTATATTTGTCCATCCGATTCTGATTCGAGTAATGAGCAGATATGTAATGATGATGTTGCTGTTCCTGATAATCAATCTACTGGACAGAATGTTCCCATCGAAGTGGACAGTGAAGAGGAAGGAAATGCAAGACATGGAGGCAACCAACAAACTTGTCAGAAAAATGTTAATGATACTGCTGCTCAGAAGTATCTCAATTCAGTGATTGCCTACCCTTATCCAGACTTTGATTTTGGCAAATCCAGAGATACTGAAGAAACTGATGAATCCATAAAACAGTATGGCTGGGCTGGTGACATGGAAGGTAAAGGCCTGGTGACAAGAAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_38#0 ACTCACTCACCTCACCTCTGCCTCTGCTCTTCCTCCAAGAACCTAACCACGCCCACCGCC 60
consensus_38#1 ------------------------------------------------------------
consensus_38#0 CACCACGGTGGCTCGCCGGCGCCGGCCGCCGCGGATCACGTTCCAGCCCCAGCTCAGCTC 120
consensus_38#1 ------------------------------------------------------------
consensus_38#0 GGAGGTAGAGCATGTTAATGCCATTCTGGAACAAGTATATGTGAAGGGTTTCTTGGTCAA 180
consensus_38#1 ------------------------------------------------------------
consensus_38#0 ATTTCTGGAATACTTTGATGGAATGCAACAGAGAGGAGGCCTTCAGGGCCAGAGAAATTG 240
consensus_38#1 ------------------------------------------------------------
consensus_38#0 CTGTAAAGAAGCTGGAAAATAGAGACTTTGTCGGCGCCCGCAAGATCGCGATTAAAGCTC 300
consensus_38#1 ------------------------------------------------------------
consensus_38#0 AAAGGCTTTTTCCTGAGCTTGAGAACATCTCCCAGCTGTTAATTATCTGTGAAGTTCTTT 360
consensus_38#1 ------------------------------------------------------------
consensus_38#0 CTTCAGCTGAGGCAAAGATCTCTGGAGAGTTGGATTGGTATGGTGTTCTTCAGGTGGATA 420
consensus_38#1 ------------------------------------------------------------
consensus_38#0 AAATGGCAGACGAAACAGTAATAAGAAGGCAATACAACATACTTTCGTATCGGCTTCATC 480
consensus_38#1 ------------------------------------------------------------
consensus_38#0 CTGATAATAATACTCTGTTTGGTGCCGAAGCCGCATTCAGGTTTGTTTCAGAAGCTCATG 540
consensus_38#1 ------------------------------------------------------------
consensus_38#0 CAATATTGAGTGATCATGTGAAGAGGTCTCTGTATGACACCAAAAGACAGTGTGCTTCAA 600
consensus_38#1 ----------------TGTGGGAATTTCTAGCCCCCACAGCGAACG-TAGTGCCTTT--- 40
**** * *** *** * ** * **** **
consensus_38#0 GAGAAGTGGCCAAGGAGGCTACACAGCCACCAAACAAGACTGATTCAAACATAAGCAATG 660
consensus_38#1 ------TTCTCAAAGCTGTTTTAAT-------AATATAATAGAATAATAGATAGATA-TA 86
* *** * * * * ** * * ** * * * *** * *
consensus_38#0 TGGCTGGATCCATGACACCATCTGCTTCTGTGCTTGTATTCTGGACAATATGTCCGCATT 720
consensus_38#1 TAGATAGATAGATAG----ATAGATAGATAGATAGATAGATAGATAGATATGTCCGCATT 142
* * * *** ** ** * ** * *************
consensus_38#0 GTCAGAAGCGATTTCTGTACTACCAACGGAACTTTTTGGCCCGCTGCAGTGATTGTGGTA 780
consensus_38#1 GTCAGAAGCAATCTCTGTACTACCAACGGAACTTTTTGGCCCGCTGCAATGATTGTGGTA 202
********* ** *********************************** ***********
consensus_38#0 AGAGGTTCTTCGCAATCAAACTGCATGAGCAGTCTGTTCCCTCGAGAATCCTATCAACTG 840
consensus_38#1 A---GTTCTTTGCAATCAAACTGCGTGAGCAGTCTGTGCCCTCAAGAATCCTATCAACTG 259
* ****** ************* ************ ***** ****************
consensus_38#0 CTGCAAAAAAGTCTCAGCTTTCAACGTCAGAAATGTTATCATTTCAACGAAGTAGTGTCC 900
consensus_38#1 CTGCAAAAAGGTCTCAGCTTTCACCGTCAGAAATGTTCTCATTTCAACGAAGTAGTGTCC 319
********* ************* ************* **********************
consensus_38#0 CCAATCAGCAT------------CAACAAGGTAAATGCTTGGTTACAAGAAGGCGAGGCC 948
consensus_38#1 CCAATCAGCATGGTAATCAGCATCAACAAGGTAAATGCTTGGTGACAAGAAG-CGAGGCC 378
*********** ******************** ******** *******
consensus_38#0 ATTCAATTTTCAGCAATGAAGCAAACTAAATCTCACATCTGCGCTTTTGACAATGATAAG 1008
consensus_38#1 ATTCAATTTTCAGCAATGAAGCAAACTAAATCTCACATCTGCTCTTCTGACAATGATAAG 438
****************************************** *** *************
consensus_38#0 CCTGGAACTTTGGTACCAAAGAGTTCTGATCTTAAGTCCATCTCAGTTAAGAATTTGACT 1068
consensus_38#1 CCTGGAACTTTGGTACCAAAGAGTTCTGATCTAAACTCCATCTCTGTTAAGAATTTGACT 498
******************************** ** ******** ***************
consensus_38#0 AGAGAAAGTGCACCTGCAGAGGAAAATGCTGCAGAATCATCCAGTCTTCAGATATTGGGT 1128
consensus_38#1 AGAGAAAGTGCACCTGCAGAGGAAAATGCTGCAGAATCATCCAGTTTTCAGATATTGGGT 558
********************************************* **************
consensus_38#0 AAGAGAAAGCTTTATGTTACCTCTGACAGCAGCCATGGTATGAACTCCAATATTAAGAGG 1188
consensus_38#1 AAGAGAAAGCTCTATGTTACCTCTGACAGCAGCCATGGTATGAACTCCAATATTAAGAGG 618
*********** ************************************************
consensus_38#0 CAAAGGAAGTATACTTGTCCATCCGATTCTGATTCGAGTAATGAGCAGATATGTAATGAT 1248
consensus_38#1 CAAAGGAAGTATATTTGTCCATCCGATTCTGATTCGAGTAATGAGCAGATATGTAATGAT 678
************* **********************************************
consensus_38#0 GATGTTGCTGTTCCTGATAATCAATCTACTGGACAGAATGTTCCCATCGAAGTGGACAGT 1308
consensus_38#1 GATGTTGCTGTTCCTGATAATCAATCTACTGGACAGAATGTTCCCATCGAAGTGGACAGT 738
************************************************************
consensus_38#0 GAAGAGGAAAGAAATGCAAGACATGGAAGCAACCAACAAACTTGTAAGAAAAATGTTACT 1368
consensus_38#1 GAAGAGGAAGGAAATGCAAGACATGGAGGCAACCAACAAACTTGTCAGAAAAATGTTAAT 798
********* ***************** ***************** ************ *
consensus_38#0 GATACTGCTTCTCAGAAGTCTGTCAATTCGGTGATTGCCTACCCTTATCCAGACTTTGAT 1428
consensus_38#1 GATACTGCTGCTCAGAAGTATCTCAATTCAGTGATTGCCTACCCTTATCCAGACTTTGAT 858
********* ********* * ******* ******************************
consensus_38#0 TTTTGCAAGTCCAGAGATGCTGAAGAAACTGATGAATCCATAAAACAATATGGCTGGGCT 1488
consensus_38#1 TTTGGCAAATCCAGAGATACTGAAGAAACTGATGAATCCATAAAACAGTATGGCTGGGCT 918
*** **** ********* **************************** ************
consensus_38#0 GGTGACATGGCAGGTAAAGGCCTGGTGACAAGAAG- 1523
consensus_38#1 GGTGACATGGAAGGTAAAGGCCTGGTGACAAGAAGT 954
********** ************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||