These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3814#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1549 fasta sequence [ATATCTCAATGACACTAAGCCCTTGCTGGAGTTGTACAAAAGTTCACAAGTTCACTTCTTGGAAGAAGATTTCATACTAGAGAATATCGGTTCCTGGTCAGCTAAATTACTCAAGCAACAACTCTCGTTCAACAAGATATCGAAATCATTAATGCCAGAGGTTGAGTATGCCCTTAAATATCCCTTCTATGCAACCGTGGAAGTACTAGAGCACAAGGGGAACATAGAGCGATTCAACGTAAACGGCTTCCAGCGTCTGAAATCTGGATACTGCGGCTCCGGGGCAGACAAAGAAATTCTAGCTTTGGCTGTCAATAAATTCCACTACGCCCAGTCTGTTTACCAACAAGAACTCCGGTATCTCGAGAGCTGGGTGGCAGAATTTAGGCTGGACGAGCTGAAATTCGCGAGAGTGATTCCACTGCAGTCGCTTTTGTCTGTGTTGTCCCCTTGTTCCCCTGCGAGTTGTCCGATGCCCGCATTGCTTGGAGCCAGAACGCCATACTGACGGCTGTGGTTGATGACTTGTTCGACGGCGGAGGGTCCATGGAGGAGATGCTGAATTTGGTCGCGTTATTCGACAAATGGGACGATCACGGTGAGATTGGCTTCTGCTCCAGCAACGTAGAGATTATGTTCAATGCTGTTTACAACACGACCAAGCGTATCGGCGCAAAGGCCGCACTGGTGCAGAAGCGTTGCGTCATCGATCATATTGCCGAGCAATGGCAGGTGATGGTGAGGGCCATGCTGACCGAGGCAGAGTGGGCGGCGGGCAAGCACATCCCGGCAACAATGGGGGAGTACATGTCGGTGGCGGAGCCGTCGTTCGCGTTGGGCCCCATCGTCCCCGTGTCGGCGTACCTGCTCGGGGAGGAGCTGCCGGAGGAGGCGGTGCGGAGCCCGGAGTACGGCCGTCTCCTGGGGCTCGCCAGCGCCGTGGGCCGCCTCCTGAACGACGTGATGACCTACGAGAAGGAGATGGGCACCGGGAAGCTCAACAGCGTCGTGCTGCTGCAACCTCTCGCCGCCGGCGGCGCCGCCTCTCGCGGCGGCGGCGGCGCTCCGGCTCCGGCTCCGGCGTCCGTCGAGGCGGCCAGGGCGGAGGTGCGGAGGGCCATCCAGGCGTCGTGGAGGGACCTGCATGGGCTGGTGTTCGGATCAGGCGGCGGCAGCAGCAGCAGCATCATTCCCCGGCCGTGCAGGGAGGTCTTCTGGCACACCGGGAAGGTGGCCAGCGTCTTCTACCAGGAGGGAGACGGCTACGCACGGAAGGCAATGCGGAGCATGGCCAACGCGGTGATTCTGGAGCCACTGCACCTGCAAGAGTAACACCTGAATTAATTCCTACGTCTTGTTGCTTGGCAAATGACACATGATGCAAATGGCCACTCTCCCTCGCTGAACATTTTCTAAAACTAGGAAGAAAACCCGCGCATATGCGCGGGCATTTGATTTATTCTTTTACGAAAATAATGCTTACAGAAGTCATATATCATTTTAATATATTTAAATGATAAGGAGGCCTCCTAGATTAAATAAAATCATT] [+] EMBL AK108710 [ATATCTCAATGACACTAAGCCCTTGCTGGAGTTGTACAAAAGTTCACAAGTTCACTTCTTGGAAGAAGATTTCATACTAGAGAATATCGGTTCCTGGTCAGCTAAATTACTCAAGCAACAACTCTCGTTCAACAAGATATCGAAATCATTAATGCCAGAGGTTGAGTATGCCCTTAAATATCCCTTCTATGCAACCGTGGAAGTACTAGAGCACAAGGGGAACATAGAGCGATTCAACGTAAACGGCTTCCAGCGTCTGAAATCTGGATACTGCGGCTCCGGGGCAGACAAAGAAATTCTAGCTTTGGCTGTCAATAAATTCCACTACGCCCAGTCTGTTTACCAACAAGAACTCCGGTATCTCGAGAGCTGGGTGGCAGAATTTAGGCTGGACGAGCTGAAATTCGCGAGAGTGATTCCACTGCAGTCGCTTTTGTCTGTGTTGTCCCCTTGTTCCCCTGCGAGTTGTCCGATGCCCGCATTGCTTGGAGCCAGAACGCCATACTGACGGCTGTGGTTGATGACTTGTTCGACGGCGGAGGGTCCATGGAGGAGATGCTGAATTTGGTCGCGTTATTCGACAAATGGGACGATCACGGTGAGATTGGCTTCTGCTCCAGCAACGTAGAGATTATGTTCAATGCTGTTTACAACACGACCAAGCGTATCGGCGCAAAGGCCGCACTGGTGCAGAAGCGTTGCGTCATCGATCATATTGCCGAGCAATGGCAGGTGATGGTGAGGGCCATGCTGACCGAGGCAGAGTGGGCGGCGGGCAAGCACATCCCGGCAACAATGGGGGAGTACATGTCGGTGGCGGAGCCGTCGTTCGCGTTGGGCCCCATCGTCCCCGTGTCGGCGTACCTGCTCGGGGAGGAGCTGCCGGAGGAGGCGGTGCGGAGCCCGGAGTACGGCCGTCTCCTGGGGCTCGCCAGCGCCGTGGGCCGCCTCCTGAACGACGTGATGACCTACGAGAAGGAGATGGGCACCGGGAAGCTCAACAGCGTCGTGCTGCTGCAACCTCTCGCCGCCGGCGGCGCCGCCTCTCGCGGCGGCGGCGGCGCTCCGGCTCCGGCTCCGGCGTCCGTCGAGGCGGCCAGGGCGGAGGTGCGGAGGGCCATCCAGGCGTCGTGGAGGGACCTGCATGGGCTGGTGTTCGGATCAGGCGGCGGCAGCAGCAGCAGCATCATTCCCCGGCCGTGCAGGGAGGTCTTCTGGCACACCGGGAAGGTGGCCAGCGTCTTCTACCAGGAGGGAGACGGCTACGCACGGAAGGCAATGCGGAGCATGGCCAACGCGGTGATTCTGGAGCCACTGCACCTGCAAGAGTAACACCTGAATTAATTCCTACGTCTTGTTGCTTGGCAAATGACACATGATGCAAATGGCCACTCTCCCTCGCTGAACATTTTCTAAAACTAGGAAGAAAACCCGCGCATATGCGCGGGCATTTGATTTATTCTTTTACGAAAATAATGCTTACAGAAGTCATATATCATTTTAATATATTTAAATGATAAGGAGGCCTCCTAGATTAAATAAAATCATT] consensusID : consensus_3814#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 835 fasta sequence [GTTCAATGCTATTTACAACACGACCAAGCGCAACTGCGCAAAGGCCGCACTGGTACAGAACCGCTGTGTCATGGATCATATAGCCAAGCAATGGCAGGTGATGGTGAGGGCCATGAAGACGGAGGCAGAGTGGGCGGCGAGCAGGCACATTCCGGCAACAATGGAGGAGTACATGTCGGTGGGCGAGCCGTCCTTCGCGTTGGGACCCATCGTCCCACTGTCGGCGTACCTGCTCGGGGAGGAGCTGCCGGAGGAGGCGGTGAGGAGCCCGGAGTACGGCCAGCTGCTGCGGCACGCGTCCGCCGTCGGCCGACTCCTGAACGACGTGATGACGTACGAGAAGGAGGTCCTCACATGGACGCCCAACAGCGTCCTCCTGCAAGCCCTTGCTGCCGCCCGTGGCGGCGGCGAGTCGCCGACGCCGCCGTCCCCGGCGTGCGCCGAGGCGGCCAGGGGGGAGGTGAGGAGGGCCATCCAGGCATCCTGGCGTGACCTGCACAGGCTGGTGTTCAGAGACGACGACGGCAGCAGCATTGTTCCCCGGGCATGCAGGGAGCTCTTCTGGGGGACGGCTAAGGTGGCCAACGTCTTCTACCAAGAGGTAGACGGCTACACACCCAAGGCGATGCGCGGCATGGCCAACGCAGTGATTCTGGATCCACTGCACCTGCAACAGTAAAACACCTACGTCTTGTTTGGGAAGACAGTCATCGGCCGGGTACCCGTAAAGTGCCGTAAGAGCAAGTTTAATAGTATAGCCAACTACCGGTTTCAAATTATTTATAGTTAATTGAATAGCTGATTCATACAATAGTTCCCTATAAAAAAAAAAAGA] [-] EMBL CB633568 [GTTCAATGCTATTTACAACACGACCAAGCGCAACTGCGCAAAGGCCGCACTGGTACAGAACCGCTGTGTCATGGATCATATAGCCAAGCAATGGCAGGTGATGGTGAGGGCCATGAAGACGGAGGCAGAGTGGGCGGCGAGCAGGCACATTCCGGCAACAATGGAGGAGTACATGTCGGTGGGCGAGCCGTCCTTCGCGTTGGGACCCATCGTCCCACTGTCGGCGTACCTGCTCGGGGAGGAGCTGCCGGAGGAGGCGGTGAGGAGCCCGGAGTACGGCCAGCTGCTGCGGCACGCGTCCGCCGTCGGCCGACTCCTGAACGACGTGATGACGTACGAGAAGGAGGTCCTCACATGGACGCCCAACAGCGTCCTCCTGCAAGCCCTTGCTGCCGCCCGTGGCGGCGGCGAGTCGCCGACGCCGCCGTCCCCGGCGTGCGCCGAGGCGGCCAGGGGGGAGGTGAGGAGGGCCATCCAGGCATCCTGGCGTGACCTGCACAGGCTGGTGTTCAGAGACGACGACGGCAGCAGCATTGTTCCCCGGGCATGCAGGGAGCTCTTCTGGGGGACGGCTAAGGTGGCCAACGTCTTCTACCAAGAGGTAGACGGCTACACACCCAAGGCGATGCGCGGCATGGCCAACGCAGTGATTCTGGATCCACTGCACCTGCAACAGTAAAACACCTACGTCTTGTTTGGGAAGACAGTCATCGGCCGGGTACCCGTAAAGTGCCGTAAGAGCAAGTTTAATAGTATAGCCAACTACCGGTTTCAAATTATTTATAGTTAATTGAATAGCTGATTCATACAATAGTTCCCTATAAAAAAAAAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3814#0 ATATCTCAATGACACTAAGCCCTTGCTGGAGTTGTACAAAAGTTCACAAGTTCACTTCTT 60 consensus_3814#1 ------------------------------------------------------------ consensus_3814#0 GGAAGAAGATTTCATACTAGAGAATATCGGTTCCTGGTCAGCTAAATTACTCAAGCAACA 120 consensus_3814#1 ------------------------------------------------------------ consensus_3814#0 ACTCTCGTTCAACAAGATATCGAAATCATTAATGCCAGAGGTTGAGTATGCCCTTAAATA 180 consensus_3814#1 ------------------------------------------------------------ consensus_3814#0 TCCCTTCTATGCAACCGTGGAAGTACTAGAGCACAAGGGGAACATAGAGCGATTCAACGT 240 consensus_3814#1 ------------------------------------------------------------ consensus_3814#0 AAACGGCTTCCAGCGTCTGAAATCTGGATACTGCGGCTCCGGGGCAGACAAAGAAATTCT 300 consensus_3814#1 ------------------------------------------------------------ consensus_3814#0 AGCTTTGGCTGTCAATAAATTCCACTACGCCCAGTCTGTTTACCAACAAGAACTCCGGTA 360 consensus_3814#1 ------------------------------------------------------------ consensus_3814#0 TCTCGAGAGCTGGGTGGCAGAATTTAGGCTGGACGAGCTGAAATTCGCGAGAGTGATTCC 420 consensus_3814#1 ------------------------------------------------------------ consensus_3814#0 ACTGCAGTCGCTTTTGTCTGTGTTGTCCCCTTGTTCCCCTGCGAGTTGTCCGATGCCCGC 480 consensus_3814#1 ------------------------------------------------------------ consensus_3814#0 ATTGCTTGGAGCCAGAACGCCATACTGACGGCTGTGGTTGATGACTTGTTCGACGGCGGA 540 consensus_3814#1 ------------------------------------------------------------ consensus_3814#0 GGGTCCATGGAGGAGATGCTGAATTTGGTCGCGTTATTCGACAAATGGGACGATCACGGT 600 consensus_3814#1 ------------------------------------------------------------ consensus_3814#0 GAGATTGGCTTCTGCTCCAGCAACGTAGAGATTATGTTCAATGCTGTTTACAACACGACC 660 consensus_3814#1 -----------------------------------GTTCAATGCTATTTACAACACGACC 25 ********** ************** consensus_3814#0 AAGCGTATCGGCGCAAAGGCCGCACTGGTGCAGAAGCGTTGCGTCATCGATCATATTGCC 720 consensus_3814#1 AAGCGCAACTGCGCAAAGGCCGCACTGGTACAGAACCGCTGTGTCATGGATCATATAGCC 85 ***** * * ******************* ***** ** ** ***** ******** *** consensus_3814#0 GAGCAATGGCAGGTGATGGTGAGGGCCATGCTGACCGAGGCAGAGTGGGCGGCGGGCAAG 780 consensus_3814#1 AAGCAATGGCAGGTGATGGTGAGGGCCATGAAGACGGAGGCAGAGTGGGCGGCGAGCAGG 145 ***************************** *** ****************** *** * consensus_3814#0 CACATCCCGGCAACAATGGGGGAGTACATGTCGGTGGCGGAGCCGTCGTTCGCGTTGGGC 840 consensus_3814#1 CACATTCCGGCAACAATGGAGGAGTACATGTCGGTGGGCGAGCCGTCCTTCGCGTTGGGA 205 ***** ************* ***************** ******** *********** consensus_3814#0 CCCATCGTCCCCGTGTCGGCGTACCTGCTCGGGGAGGAGCTGCCGGAGGAGGCGGTGCGG 900 consensus_3814#1 CCCATCGTCCCACTGTCGGCGTACCTGCTCGGGGAGGAGCTGCCGGAGGAGGCGGTGAGG 265 *********** ******************************************** ** consensus_3814#0 AGCCCGGAGTACGGCCGTCTCCTGGGGCTCGCCAGCGCCGTGGGCCGCCTCCTGAACGAC 960 consensus_3814#1 AGCCCGGAGTACGGCCAGCTGCTGCGGCACGCGTCCGCCGTCGGCCGACTCCTGAACGAC 325 **************** ** *** *** *** ****** ***** ************ consensus_3814#0 GTGATGACCTACGAGAAGGAGATGGGCACCGGGAAGCTCAACAGCGTCGTGCTGCTGCAA 1020 consensus_3814#1 GTGATGACGTACGAGAAGGAGGTCCTCACATGGACGCCCAACAGCGTC---CTCCTGCAA 382 ******** ************ * *** *** ** ********** ** ****** consensus_3814#0 CCTCTCGCCGCCGGCGGCGCCGCCTCTCGCGGCGGCGGCGGCGCTCCGGCTCCGGCTCCG 1080 consensus_3814#1 GCCCTTGCTGCCGCCCGTG---------GCGGCGGCGAGTCGCCGACGCCGCCGTCCCCG 433 * ** ** **** * * * ********* * ** * *** * *** consensus_3814#0 GCGTCCGTCGAGGCGGCCAGGGCGGAGGTGCGGAGGGCCATCCAGGCGTCGTGGAGGGAC 1140 consensus_3814#1 GCGTGCGCCGAGGCGGCCAGGGGGGAGGTGAGGAGGGCCATCCAGGCATCCTGGCGTGAC 493 **** ** ************** ******* **************** ** *** * *** consensus_3814#0 CTGCATGGGCTGGTGTTCGGATCAGGCGGCGGCAGCAGCAGCAGCATCATTCCCCGGCCG 1200 consensus_3814#1 CTGCACAGGCTGGTGTTCAGA------GACGACGACGGCAGCAGCATTGTTCCCCGGGCA 547 ***** *********** ** * ** * * ********** ******** * consensus_3814#0 TGCAGGGAGGTCTTCTGGCACACCGGGAAGGTGGCCAGCGTCTTCTACCAGGAGGGAGAC 1260 consensus_3814#1 TGCAGGGAGCTCTTCTGGGGGACGGCTAAGGTGGCCAACGTCTTCTACCAAGAGGTAGAC 607 ********* ******** ** * ********** ************ **** **** consensus_3814#0 GGCTACGCACGGAAGGCAATGCGGAGCATGGCCAACGCGGTGATTCTGGAGCCACTGCAC 1320 consensus_3814#1 GGCTACACACCCAAGGCGATGCGCGGCATGGCCAACGCAGTGATTCTGGATCCACTGCAC 667 ****** *** ***** ***** ************* *********** ********* consensus_3814#0 CTGCAAGAGTAACACCTGAATTAATTCCTACGTCTTGTTGCTTGGCAAATGACACATGAT 1380 consensus_3814#1 CTGCAACAGTAA----------AACACCTACGTCTTGTT---TGGGAA--GACA------ 706 ****** ***** ** ************* *** ** **** consensus_3814#0 GCAAATGGCCACTCTCCCTCGCTGAACATTTTCTAAAACTAGGAAGAAAACCCGCGCATA 1440 consensus_3814#1 GTCATCGGCCGGGTACCCGT----AAAGTGCCGTAAGAGCAAGTTTAATA-------GTA 755 * * **** *** ** * *** * * * ** * ** consensus_3814#0 TGCGCGGGCATTTGATTTATTCTTTTACGAAAATAATGCTTACAGAAGTCATATATCATT 1500 consensus_3814#1 TAGCCAACTACCGGTTTCAAATTATTTATAGTTAATTGAATAGCTGATTCATACAATAGT 815 * * * * ** * * ** * * ** ** * ***** * * * consensus_3814#0 TTAATATATTTAAATGATAAGGAGGCCTCCTAGATTAAATAAAATCATT 1549 consensus_3814#1 TCCCTATA---AAAAAAAAAAGA-------------------------- 835 * **** *** * ** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||