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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3814#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1549 fasta sequence
[ATATCTCAATGACACTAAGCCCTTGCTGGAGTTGTACAAAAGTTCACAAGTTCACTTCTTGGAAGAAGATTTCATACTAGAGAATATCGGTTCCTGGTCAGCTAAATTACTCAAGCAACAACTCTCGTTCAACAAGATATCGAAATCATTAATGCCAGAGGTTGAGTATGCCCTTAAATATCCCTTCTATGCAACCGTGGAAGTACTAGAGCACAAGGGGAACATAGAGCGATTCAACGTAAACGGCTTCCAGCGTCTGAAATCTGGATACTGCGGCTCCGGGGCAGACAAAGAAATTCTAGCTTTGGCTGTCAATAAATTCCACTACGCCCAGTCTGTTTACCAACAAGAACTCCGGTATCTCGAGAGCTGGGTGGCAGAATTTAGGCTGGACGAGCTGAAATTCGCGAGAGTGATTCCACTGCAGTCGCTTTTGTCTGTGTTGTCCCCTTGTTCCCCTGCGAGTTGTCCGATGCCCGCATTGCTTGGAGCCAGAACGCCATACTGACGGCTGTGGTTGATGACTTGTTCGACGGCGGAGGGTCCATGGAGGAGATGCTGAATTTGGTCGCGTTATTCGACAAATGGGACGATCACGGTGAGATTGGCTTCTGCTCCAGCAACGTAGAGATTATGTTCAATGCTGTTTACAACACGACCAAGCGTATCGGCGCAAAGGCCGCACTGGTGCAGAAGCGTTGCGTCATCGATCATATTGCCGAGCAATGGCAGGTGATGGTGAGGGCCATGCTGACCGAGGCAGAGTGGGCGGCGGGCAAGCACATCCCGGCAACAATGGGGGAGTACATGTCGGTGGCGGAGCCGTCGTTCGCGTTGGGCCCCATCGTCCCCGTGTCGGCGTACCTGCTCGGGGAGGAGCTGCCGGAGGAGGCGGTGCGGAGCCCGGAGTACGGCCGTCTCCTGGGGCTCGCCAGCGCCGTGGGCCGCCTCCTGAACGACGTGATGACCTACGAGAAGGAGATGGGCACCGGGAAGCTCAACAGCGTCGTGCTGCTGCAACCTCTCGCCGCCGGCGGCGCCGCCTCTCGCGGCGGCGGCGGCGCTCCGGCTCCGGCTCCGGCGTCCGTCGAGGCGGCCAGGGCGGAGGTGCGGAGGGCCATCCAGGCGTCGTGGAGGGACCTGCATGGGCTGGTGTTCGGATCAGGCGGCGGCAGCAGCAGCAGCATCATTCCCCGGCCGTGCAGGGAGGTCTTCTGGCACACCGGGAAGGTGGCCAGCGTCTTCTACCAGGAGGGAGACGGCTACGCACGGAAGGCAATGCGGAGCATGGCCAACGCGGTGATTCTGGAGCCACTGCACCTGCAAGAGTAACACCTGAATTAATTCCTACGTCTTGTTGCTTGGCAAATGACACATGATGCAAATGGCCACTCTCCCTCGCTGAACATTTTCTAAAACTAGGAAGAAAACCCGCGCATATGCGCGGGCATTTGATTTATTCTTTTACGAAAATAATGCTTACAGAAGTCATATATCATTTTAATATATTTAAATGATAAGGAGGCCTCCTAGATTAAATAAAATCATT]
[+] EMBL AK108710 [ATATCTCAATGACACTAAGCCCTTGCTGGAGTTGTACAAAAGTTCACAAGTTCACTTCTTGGAAGAAGATTTCATACTAGAGAATATCGGTTCCTGGTCAGCTAAATTACTCAAGCAACAACTCTCGTTCAACAAGATATCGAAATCATTAATGCCAGAGGTTGAGTATGCCCTTAAATATCCCTTCTATGCAACCGTGGAAGTACTAGAGCACAAGGGGAACATAGAGCGATTCAACGTAAACGGCTTCCAGCGTCTGAAATCTGGATACTGCGGCTCCGGGGCAGACAAAGAAATTCTAGCTTTGGCTGTCAATAAATTCCACTACGCCCAGTCTGTTTACCAACAAGAACTCCGGTATCTCGAGAGCTGGGTGGCAGAATTTAGGCTGGACGAGCTGAAATTCGCGAGAGTGATTCCACTGCAGTCGCTTTTGTCTGTGTTGTCCCCTTGTTCCCCTGCGAGTTGTCCGATGCCCGCATTGCTTGGAGCCAGAACGCCATACTGACGGCTGTGGTTGATGACTTGTTCGACGGCGGAGGGTCCATGGAGGAGATGCTGAATTTGGTCGCGTTATTCGACAAATGGGACGATCACGGTGAGATTGGCTTCTGCTCCAGCAACGTAGAGATTATGTTCAATGCTGTTTACAACACGACCAAGCGTATCGGCGCAAAGGCCGCACTGGTGCAGAAGCGTTGCGTCATCGATCATATTGCCGAGCAATGGCAGGTGATGGTGAGGGCCATGCTGACCGAGGCAGAGTGGGCGGCGGGCAAGCACATCCCGGCAACAATGGGGGAGTACATGTCGGTGGCGGAGCCGTCGTTCGCGTTGGGCCCCATCGTCCCCGTGTCGGCGTACCTGCTCGGGGAGGAGCTGCCGGAGGAGGCGGTGCGGAGCCCGGAGTACGGCCGTCTCCTGGGGCTCGCCAGCGCCGTGGGCCGCCTCCTGAACGACGTGATGACCTACGAGAAGGAGATGGGCACCGGGAAGCTCAACAGCGTCGTGCTGCTGCAACCTCTCGCCGCCGGCGGCGCCGCCTCTCGCGGCGGCGGCGGCGCTCCGGCTCCGGCTCCGGCGTCCGTCGAGGCGGCCAGGGCGGAGGTGCGGAGGGCCATCCAGGCGTCGTGGAGGGACCTGCATGGGCTGGTGTTCGGATCAGGCGGCGGCAGCAGCAGCAGCATCATTCCCCGGCCGTGCAGGGAGGTCTTCTGGCACACCGGGAAGGTGGCCAGCGTCTTCTACCAGGAGGGAGACGGCTACGCACGGAAGGCAATGCGGAGCATGGCCAACGCGGTGATTCTGGAGCCACTGCACCTGCAAGAGTAACACCTGAATTAATTCCTACGTCTTGTTGCTTGGCAAATGACACATGATGCAAATGGCCACTCTCCCTCGCTGAACATTTTCTAAAACTAGGAAGAAAACCCGCGCATATGCGCGGGCATTTGATTTATTCTTTTACGAAAATAATGCTTACAGAAGTCATATATCATTTTAATATATTTAAATGATAAGGAGGCCTCCTAGATTAAATAAAATCATT]
consensusID : consensus_3814#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 835 fasta sequence
[GTTCAATGCTATTTACAACACGACCAAGCGCAACTGCGCAAAGGCCGCACTGGTACAGAACCGCTGTGTCATGGATCATATAGCCAAGCAATGGCAGGTGATGGTGAGGGCCATGAAGACGGAGGCAGAGTGGGCGGCGAGCAGGCACATTCCGGCAACAATGGAGGAGTACATGTCGGTGGGCGAGCCGTCCTTCGCGTTGGGACCCATCGTCCCACTGTCGGCGTACCTGCTCGGGGAGGAGCTGCCGGAGGAGGCGGTGAGGAGCCCGGAGTACGGCCAGCTGCTGCGGCACGCGTCCGCCGTCGGCCGACTCCTGAACGACGTGATGACGTACGAGAAGGAGGTCCTCACATGGACGCCCAACAGCGTCCTCCTGCAAGCCCTTGCTGCCGCCCGTGGCGGCGGCGAGTCGCCGACGCCGCCGTCCCCGGCGTGCGCCGAGGCGGCCAGGGGGGAGGTGAGGAGGGCCATCCAGGCATCCTGGCGTGACCTGCACAGGCTGGTGTTCAGAGACGACGACGGCAGCAGCATTGTTCCCCGGGCATGCAGGGAGCTCTTCTGGGGGACGGCTAAGGTGGCCAACGTCTTCTACCAAGAGGTAGACGGCTACACACCCAAGGCGATGCGCGGCATGGCCAACGCAGTGATTCTGGATCCACTGCACCTGCAACAGTAAAACACCTACGTCTTGTTTGGGAAGACAGTCATCGGCCGGGTACCCGTAAAGTGCCGTAAGAGCAAGTTTAATAGTATAGCCAACTACCGGTTTCAAATTATTTATAGTTAATTGAATAGCTGATTCATACAATAGTTCCCTATAAAAAAAAAAAGA]
[-] EMBL CB633568 [GTTCAATGCTATTTACAACACGACCAAGCGCAACTGCGCAAAGGCCGCACTGGTACAGAACCGCTGTGTCATGGATCATATAGCCAAGCAATGGCAGGTGATGGTGAGGGCCATGAAGACGGAGGCAGAGTGGGCGGCGAGCAGGCACATTCCGGCAACAATGGAGGAGTACATGTCGGTGGGCGAGCCGTCCTTCGCGTTGGGACCCATCGTCCCACTGTCGGCGTACCTGCTCGGGGAGGAGCTGCCGGAGGAGGCGGTGAGGAGCCCGGAGTACGGCCAGCTGCTGCGGCACGCGTCCGCCGTCGGCCGACTCCTGAACGACGTGATGACGTACGAGAAGGAGGTCCTCACATGGACGCCCAACAGCGTCCTCCTGCAAGCCCTTGCTGCCGCCCGTGGCGGCGGCGAGTCGCCGACGCCGCCGTCCCCGGCGTGCGCCGAGGCGGCCAGGGGGGAGGTGAGGAGGGCCATCCAGGCATCCTGGCGTGACCTGCACAGGCTGGTGTTCAGAGACGACGACGGCAGCAGCATTGTTCCCCGGGCATGCAGGGAGCTCTTCTGGGGGACGGCTAAGGTGGCCAACGTCTTCTACCAAGAGGTAGACGGCTACACACCCAAGGCGATGCGCGGCATGGCCAACGCAGTGATTCTGGATCCACTGCACCTGCAACAGTAAAACACCTACGTCTTGTTTGGGAAGACAGTCATCGGCCGGGTACCCGTAAAGTGCCGTAAGAGCAAGTTTAATAGTATAGCCAACTACCGGTTTCAAATTATTTATAGTTAATTGAATAGCTGATTCATACAATAGTTCCCTATAAAAAAAAAAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3814#0 ATATCTCAATGACACTAAGCCCTTGCTGGAGTTGTACAAAAGTTCACAAGTTCACTTCTT 60
consensus_3814#1 ------------------------------------------------------------
consensus_3814#0 GGAAGAAGATTTCATACTAGAGAATATCGGTTCCTGGTCAGCTAAATTACTCAAGCAACA 120
consensus_3814#1 ------------------------------------------------------------
consensus_3814#0 ACTCTCGTTCAACAAGATATCGAAATCATTAATGCCAGAGGTTGAGTATGCCCTTAAATA 180
consensus_3814#1 ------------------------------------------------------------
consensus_3814#0 TCCCTTCTATGCAACCGTGGAAGTACTAGAGCACAAGGGGAACATAGAGCGATTCAACGT 240
consensus_3814#1 ------------------------------------------------------------
consensus_3814#0 AAACGGCTTCCAGCGTCTGAAATCTGGATACTGCGGCTCCGGGGCAGACAAAGAAATTCT 300
consensus_3814#1 ------------------------------------------------------------
consensus_3814#0 AGCTTTGGCTGTCAATAAATTCCACTACGCCCAGTCTGTTTACCAACAAGAACTCCGGTA 360
consensus_3814#1 ------------------------------------------------------------
consensus_3814#0 TCTCGAGAGCTGGGTGGCAGAATTTAGGCTGGACGAGCTGAAATTCGCGAGAGTGATTCC 420
consensus_3814#1 ------------------------------------------------------------
consensus_3814#0 ACTGCAGTCGCTTTTGTCTGTGTTGTCCCCTTGTTCCCCTGCGAGTTGTCCGATGCCCGC 480
consensus_3814#1 ------------------------------------------------------------
consensus_3814#0 ATTGCTTGGAGCCAGAACGCCATACTGACGGCTGTGGTTGATGACTTGTTCGACGGCGGA 540
consensus_3814#1 ------------------------------------------------------------
consensus_3814#0 GGGTCCATGGAGGAGATGCTGAATTTGGTCGCGTTATTCGACAAATGGGACGATCACGGT 600
consensus_3814#1 ------------------------------------------------------------
consensus_3814#0 GAGATTGGCTTCTGCTCCAGCAACGTAGAGATTATGTTCAATGCTGTTTACAACACGACC 660
consensus_3814#1 -----------------------------------GTTCAATGCTATTTACAACACGACC 25
********** **************
consensus_3814#0 AAGCGTATCGGCGCAAAGGCCGCACTGGTGCAGAAGCGTTGCGTCATCGATCATATTGCC 720
consensus_3814#1 AAGCGCAACTGCGCAAAGGCCGCACTGGTACAGAACCGCTGTGTCATGGATCATATAGCC 85
***** * * ******************* ***** ** ** ***** ******** ***
consensus_3814#0 GAGCAATGGCAGGTGATGGTGAGGGCCATGCTGACCGAGGCAGAGTGGGCGGCGGGCAAG 780
consensus_3814#1 AAGCAATGGCAGGTGATGGTGAGGGCCATGAAGACGGAGGCAGAGTGGGCGGCGAGCAGG 145
***************************** *** ****************** *** *
consensus_3814#0 CACATCCCGGCAACAATGGGGGAGTACATGTCGGTGGCGGAGCCGTCGTTCGCGTTGGGC 840
consensus_3814#1 CACATTCCGGCAACAATGGAGGAGTACATGTCGGTGGGCGAGCCGTCCTTCGCGTTGGGA 205
***** ************* ***************** ******** ***********
consensus_3814#0 CCCATCGTCCCCGTGTCGGCGTACCTGCTCGGGGAGGAGCTGCCGGAGGAGGCGGTGCGG 900
consensus_3814#1 CCCATCGTCCCACTGTCGGCGTACCTGCTCGGGGAGGAGCTGCCGGAGGAGGCGGTGAGG 265
*********** ******************************************** **
consensus_3814#0 AGCCCGGAGTACGGCCGTCTCCTGGGGCTCGCCAGCGCCGTGGGCCGCCTCCTGAACGAC 960
consensus_3814#1 AGCCCGGAGTACGGCCAGCTGCTGCGGCACGCGTCCGCCGTCGGCCGACTCCTGAACGAC 325
**************** ** *** *** *** ****** ***** ************
consensus_3814#0 GTGATGACCTACGAGAAGGAGATGGGCACCGGGAAGCTCAACAGCGTCGTGCTGCTGCAA 1020
consensus_3814#1 GTGATGACGTACGAGAAGGAGGTCCTCACATGGACGCCCAACAGCGTC---CTCCTGCAA 382
******** ************ * *** *** ** ********** ** ******
consensus_3814#0 CCTCTCGCCGCCGGCGGCGCCGCCTCTCGCGGCGGCGGCGGCGCTCCGGCTCCGGCTCCG 1080
consensus_3814#1 GCCCTTGCTGCCGCCCGTG---------GCGGCGGCGAGTCGCCGACGCCGCCGTCCCCG 433
* ** ** **** * * * ********* * ** * *** * ***
consensus_3814#0 GCGTCCGTCGAGGCGGCCAGGGCGGAGGTGCGGAGGGCCATCCAGGCGTCGTGGAGGGAC 1140
consensus_3814#1 GCGTGCGCCGAGGCGGCCAGGGGGGAGGTGAGGAGGGCCATCCAGGCATCCTGGCGTGAC 493
**** ** ************** ******* **************** ** *** * ***
consensus_3814#0 CTGCATGGGCTGGTGTTCGGATCAGGCGGCGGCAGCAGCAGCAGCATCATTCCCCGGCCG 1200
consensus_3814#1 CTGCACAGGCTGGTGTTCAGA------GACGACGACGGCAGCAGCATTGTTCCCCGGGCA 547
***** *********** ** * ** * * ********** ******** *
consensus_3814#0 TGCAGGGAGGTCTTCTGGCACACCGGGAAGGTGGCCAGCGTCTTCTACCAGGAGGGAGAC 1260
consensus_3814#1 TGCAGGGAGCTCTTCTGGGGGACGGCTAAGGTGGCCAACGTCTTCTACCAAGAGGTAGAC 607
********* ******** ** * ********** ************ **** ****
consensus_3814#0 GGCTACGCACGGAAGGCAATGCGGAGCATGGCCAACGCGGTGATTCTGGAGCCACTGCAC 1320
consensus_3814#1 GGCTACACACCCAAGGCGATGCGCGGCATGGCCAACGCAGTGATTCTGGATCCACTGCAC 667
****** *** ***** ***** ************* *********** *********
consensus_3814#0 CTGCAAGAGTAACACCTGAATTAATTCCTACGTCTTGTTGCTTGGCAAATGACACATGAT 1380
consensus_3814#1 CTGCAACAGTAA----------AACACCTACGTCTTGTT---TGGGAA--GACA------ 706
****** ***** ** ************* *** ** ****
consensus_3814#0 GCAAATGGCCACTCTCCCTCGCTGAACATTTTCTAAAACTAGGAAGAAAACCCGCGCATA 1440
consensus_3814#1 GTCATCGGCCGGGTACCCGT----AAAGTGCCGTAAGAGCAAGTTTAATA-------GTA 755
* * **** *** ** * *** * * * ** * **
consensus_3814#0 TGCGCGGGCATTTGATTTATTCTTTTACGAAAATAATGCTTACAGAAGTCATATATCATT 1500
consensus_3814#1 TAGCCAACTACCGGTTTCAAATTATTTATAGTTAATTGAATAGCTGATTCATACAATAGT 815
* * * * ** * * ** * * ** ** * ***** * * *
consensus_3814#0 TTAATATATTTAAATGATAAGGAGGCCTCCTAGATTAAATAAAATCATT 1549
consensus_3814#1 TCCCTATA---AAAAAAAAAAGA-------------------------- 835
* **** *** * ** **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||