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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_382#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1686 fasta sequence
[TCTCTCCTCACCGACGGCATCTCCAGCAGCACGGGCATTCCGGCGCCATGGGTCGGCGGCTGTTGCTGCTCTTCCTAATGCTGGCACAGGCACCCAATTCCAATGGGGATTCCAAGATAAAGAACGTGGTGGTGTTGGCGCTGGAGAACCGGTCGTTCGACCACATGCTGGGGTGGATGCAGCGGCTGCTGGGCCTCCCCATCGATGGCCTCACCGGCGCAGAGTGCAACCCGGCTCCAGGACCAGGTCCAGCCGACTCCCTCCTCCACTGCGTCTCCCCCGACGCCGACCTCGTCGTCCCCGACGACCCCGCCCACGCCTTCGAGGACGTCCTCGAGCAGCTGCTGGGGTTCCGACCCAATGACTCTACTGGCGCCGCCGCCTCCCCCTCAGACATGTCGGGCTTCGTCCGCAGCGCCGTCTCCGTGAGCGCGCTCCTGACCGACGCCGTCATGCGGGGGTTCACCCCGTCGCGGCTCCCGGCCTTCTCCGCGCTGGCCTCCTCCTTCGCGGTGTTCGACCGCTGGTTCTCCTCCATCCCGGGGCCCACGCAGCCCAACCGGCTGTTCCTCTACTCCGCCACCTCCCACGGCGCCGTCGCCCACGGCAAGTGGAACCTCCTCCGCGGCTACCCGCAGCGCACCATCTTTGACTCCCTCGCCGCCGACGCCCTCGACTACCGGGTCTACTTCAAGACCATCCCCACCACCCTCTTCTACCGCCGCCTCCGCACCGTCGCCAACGCCGCCCGCGGCACCTTCCGCCGCTACGACGCCGCCTTCCGCGACCACGCCCGCAGGGGCCTCCTCCCGGCGCTCTCCGTCATCGAGCCACGCTACTTCGACCTCACCGGCACGCCCGCCGACGACGACCACCCGGCGCACGACGTCGCCAACGGCCAGAGGCTGGTCAAGGACGTCTACGAGGCGCTGCGGGCGGGCCCGCAGTGGAACCACACACTGCTCATCATCACCTACGACGAGCACGGCGGCTTCTACGACCACGTCCCGCCGCCCAATGTCGGCGTCCCCAGCCCCGACGCCATCCGTGGCCCGCTGCCCTTCTTCTTCAGGTTCGACCGCCTCGGCGTCAGGGTGCCCACCATCATGGTGTCGCCGTGGATCAGGAAAGGGACGGTGGTGGGGAGGCCGCCGGGAGGGCCAACGCCCACGTCCGAGTACGAGCACTCCTCCATCCCGGCCACCATCAAGAAGATATTCAACCTCAGCTCCGACTTCCTCACCAGGAGGGATGCGTGGGCGGGCACCTTCGAGCACCTCTTCACGGACCTGGACGAGCCAAGGACGGATTGCCCGGAGACATTGCCGGAGATCCCGCCGCCATCTTCCTCGTCGTCGTCGACCAAGAAAGAAGACGGAGGATGGCTGTCGGACTTCCAGCGCGAGCTGGTGCAGCTGGCGGCCTTCCTCAACGGCGACTACATGCTGTCAAGCTTCGCACAGGAGTACGAGTCGAGAATGACGATGACGGTGAAGCAGGCGGATGCGTATGTGAGGCGAGCCGTCAAAAGTTTCCTGGAGGCCAGCAAGCGGGCCAAACGCTTAGGTGCAAACGACTCCGCCATTGTAACCATGAGACCATCCCTCACTACTGCAACCACCTGCTGCCCTTAGTTACCTACTGTAGTACACTAAACTAGTCTCTTTATTAATTTAATTAATTACC]
[+] EMBL AK101065 [TCTCTCCTCACCGACGGCATCTCCAGCAGCACGGGCATTCCGGCGCCATGGGTCGGCGGCTGTTGCTGCTCTTCCTAATGCTGGCACAGGCACCCAATTCCAATGGGGATTCCAAGATAAAGAACGTGGTGGTGTTGGCGCTGGAGAACCGGTCGTTCGACCACATGCTGGGGTGGATGCAGCGGCTGCTGGGCCTCCCCATCGATGGCCTCACCGGCGCAGAGTGCAACCCGGCTCCAGGACCAGGTCCAGCCGACTCCCTCCTCCACTGCGTCTCCCCCGACGCCGACCTCGTCGTCCCCGACGACCCCGCCCACGCCTTCGAGGACGTCCTCGAGCAGCTGCTGGGGTTCCGACCCAATGACTCTACTGGCGCCGCCGCCTCCCCCTCAGACATGTCGGGCTTCGTCCGCAGCGCCGTCTCCGTGAGCGCGCTCCTGACCGACGCCGTCATGCGGGGGTTCACCCCGTCGCGGCTCCCGGCCTTCTCCGCGCTGGCCTCCTCCTTCGCGGTGTTCGACCGCTGGTTCTCCTCCATCCCGGGGCCCACGCAGCCCAACCGGCTGTTCCTCTACTCCGCCACCTCCCACGGCGCCGTCGCCCACGGCAAGTGGAACCTCCTCCGCGGCTACCCGCAGCGCACCATCTTTGACTCCCTCGCCGCCGACGCCCTCGACTACCGGGTCTACTTCAAGACCATCCCCACCACCCTCTTCTACCGCCGCCTCCGCACCGTCGCCAACGCCGCCCGCGGCACCTTCCGCCGCTACGACGCCGCCTTCCGCGACCACGCCCGCAGGGGCCTCCTCCCGGCGCTCTCCGTCATCGAGCCACGCTACTTCGACCTCACCGGCACGCCCGCCGACGACGACCACCCGGCGCACGACGTCGCCAACGGCCAGAGGCTGGTCAAGGACGTCTACGAGGCGCTGCGGGCGGGCCCGCAGTGGAACCACACACTGCTCATCATCACCTACGACGAGCACGGCGGCTTCTACGACCACGTCCCGCCGCCCAATGTCGGCGTCCCCAGCCCCGACGCCATCCGTGGCCCGCTGCCCTTCTTCTTCAGGTTCGACCGCCTCGGCGTCAGGGTGCCCACCATCATGGTGTCGCCGTGGATCAGGAAAGGGACGGTGGTGGGGAGGCCGCCGGGAGGGCCAACGCCCACGTCCGAGTACGAGCACTCCTCCATCCCGGCCACCATCAAGAAGATATTCAACCTCAGCTCCGACTTCCTCACCAGGAGGGATGCGTGGGCGGGCACCTTCGAGCACCTCTTCACGGACCTGGACGAGCCAAGGACGGATTGCCCGGAGACATTGCCGGAGATCCCGCCGCCATCTTCCTCGTCGTCGTCGACCAAGAAAGAAGACGGAGGATGGCTGTCGGACTTCCAGCGCGAGCTGGTGCAGCTGGCGGCCTTCCTCAACGGCGACTACATGCTGTCAAGCTTCGCACAGGAGTACGAGTCGAGAATGACGATGACGGTGAAGCAGGCGGATGCGTATGTGAGGCGAGCCGTCAAAAGTTTCCTGGAGGCCAGCAAGCGGGCCAAACGCTTAGGTGCAAACGACTCCGCCATTGTAACCATGAGACCATCCCTCACTACTGCAACCACCTGCTGCCCTTAGTTACCTACTGTAGTACACTAAACTAGTCTCTTTATTAATTTAATTAATTACC]
consensusID : consensus_382#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence
[GTGGGAATCGGCGGAGCGGCAATCTCCGAGTGAGGGCAGCGGTAGCGCAGCGGTGCGCGCCGATGGCCGTTGTTGCCCGGCCGATCCCGTCCTTTCCGGTCGGGCGCCGTCCCCGGGCCCGTCCCGGAATATTGGATAGCGTGGCCCAGCCTGCGGCGGGTGCGGACCAGACCTGGCCGGACTCTGGCGGGCATCTTCATCCTTGCCTCGCGCAAAAAGACGAGCCAGGGTGCCCGTCCGGCTTCCAGCGCGAGTGGTGCGATCTGGCGGCATTGATTACCGCCGAATGCATCGTGTCCAGCTTGGCCCACGAGTGAGAGTCCAGAATACCTATGACGGTTAAGCAGGCGTATGCGTATGTCAGGCGAGGCGTCAAAAATTTAATGGAGGGCAGCAAGGGGGCCTAACGGTTAGGTGCAGGCGGCTCCGCCATTGTATCCCTGAGGCCATCCCTCAGTGCTGCAACCACCTGCTGCCCTTAGTTACCTTCTGTAGTACACTAAACTAGTCTCTTTATTAATTTAATTAATTACCTACCTTAGCTAATCCAATCCCCTACCCATATACTTACTACTGGAGCACTCCATTAGTTTAATTACTGTATATCGATGATCATATATATCACACAGATTTTCAGCCCAAAAAAAAAAA]
[-] EMBL CA760238 [GTGGGAATCGGCGGAGCGGCAATCTCCGAGTGAGGGCAGCGGTAGCGCAGCGGTGCGCGCCGATGGCCGTTGTTGCCCGGCCGATCCCGTCCTTTCCGGTCGGGCGCCGTCCCCGGGCCCGTCCCGGAATATTGGATAGCGTGGCCCAGCCTGCGGCGGGTGCGGACCAGACCTGGCCGGACTCTGGCGGGCATCTTCATCCTTGCCTCGCGCAAAAAGACGAGCCAGGGTGCCCGTCCGGCTTCCAGCGCGAGTGGTGCGATCTGGCGGCATTGATTACCGCCGAATGCATCGTGTCCAGCTTGGCCCACGAGTGAGAGTCCAGAATACCTATGACGGTTAAGCAGGCGTATGCGTATGTCAGGCGAGGCGTCAAAAATTTAATGGAGGGCAGCAAGGGGGCCTAACGGTTAGGTGCAGGCGGCTCCGCCATTGTATCCCTGAGGCCATCCCTCAGTGCTGCAACCACCTGCTGCCCTTAGTTACCTTCTGTAGTACACTAAACTAGTCTCTTTATTAATTTAATTAATTACCTACCTTAGCTAATCCAATCCCCTACCCATATACTTACTACTGGAGCACTCCATTAGTTTAATTACTGTATATCGATGATCATATATATCACACAGATTTTCAGCCCAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_382#0 TCTCTCCTCACCGACGGCATCTCCAGCAGCACGGGCATTCCGGCGCCATGGGTCGGCGGC 60
consensus_382#1 ------------------------------------------------------------
consensus_382#0 TGTTGCTGCTCTTCCTAATGCTGGCACAGGCACCCAATTCCAATGGGGATTCCAAGATAA 120
consensus_382#1 ------------------------------------------------------------
consensus_382#0 AGAACGTGGTGGTGTTGGCGCTGGAGAACCGGTCGTTCGACCACATGCTGGGGTGGATGC 180
consensus_382#1 ------------------------------------------------------------
consensus_382#0 AGCGGCTGCTGGGCCTCCCCATCGATGGCCTCACCGGCGCAGAGTGCAACCCGGCTCCAG 240
consensus_382#1 ------------------------------------------------------------
consensus_382#0 GACCAGGTCCAGCCGACTCCCTCCTCCACTGCGTCTCCCCCGACGCCGACCTCGTCGTCC 300
consensus_382#1 ------------------------------------------------------------
consensus_382#0 CCGACGACCCCGCCCACGCCTTCGAGGACGTCCTCGAGCAGCTGCTGGGGTTCCGACCCA 360
consensus_382#1 ------------------------------------------------------------
consensus_382#0 ATGACTCTACTGGCGCCGCCGCCTCCCCCTCAGACATGTCGGGCTTCGTCCGCAGCGCCG 420
consensus_382#1 ------------------------------------------------------------
consensus_382#0 TCTCCGTGAGCGCGCTCCTGACCGACGCCGTCATGCGGGGGTTCACCCCGTCGCGGCTCC 480
consensus_382#1 ------------------------------------------------------------
consensus_382#0 CGGCCTTCTCCGCGCTGGCCTCCTCCTTCGCGGTGTTCGACCGCTGGTTCTCCTCCATCC 540
consensus_382#1 ------------------------------------------------------------
consensus_382#0 CGGGGCCCACGCAGCCCAACCGGCTGTTCCTCTACTCCGCCACCTCCCACGGCGCCGTCG 600
consensus_382#1 ------------------------------------------------------------
consensus_382#0 CCCACGGCAAGTGGAACCTCCTCCGCGGCTACCCGCAGCGCACCATCTTTGACTCCCTCG 660
consensus_382#1 ------------------------------------------------------------
consensus_382#0 CCGCCGACGCCCTCGACTACCGGGTCTACTTCAAGACCATCCCCACCACCCTCTTCTACC 720
consensus_382#1 ------------------------------------------------------------
consensus_382#0 GCCGCCTCCGCACCGTCGCCAACGCCGCCCGCGGCACCTTCCGCCGCTACGACGCCGCCT 780
consensus_382#1 ------------------------------------------------------------
consensus_382#0 TCCGCGACCACGCCCGCAGGGGCCTCCTCCCGGCGCTCTCCGTCATCGAGCCACGCTACT 840
consensus_382#1 ------------------------------------------------------------
consensus_382#0 TCGACCTCACCGGCACGCCCGCCGACGACGACCACCCGGCGCACGACGTCGCCAACGGCC 900
consensus_382#1 ------------------------------------------------------------
consensus_382#0 AGAGGCTGGTCAAGGACGTCTACGAGGCGCTGCGGGCGGGCCCGCAGTGGAACCACACAC 960
consensus_382#1 ------------------------------------------------------------
consensus_382#0 TGCTCATCATCACCTACGACGAGCACGGCGGCTTCTACGACCACGTCCCGCCGCCCAATG 1020
consensus_382#1 ------------------------------------------------------------
consensus_382#0 TCGGCGTCCCCAGCCCCGACGCCATCCGTGGCCCGCTGCCCTTCTTCTTCAGGTTCGACC 1080
consensus_382#1 ------------------------------------------------------------
consensus_382#0 GCCTCGGCGTCAGGGTGCCCACCATCATGGTGTCGCCGTGGATCAGGAAAGGGACGGTGG 1140
consensus_382#1 ------------------------------------------------------------
consensus_382#0 TGGGGAGGCCGCCGGGAGGGCCAACGCCCACGTCCGAGTACGAGCACTCCTCCATCCCGG 1200
consensus_382#1 -GTGGGAATCGGCGG-AGCGGCAATCTCCGAGTGAGGGCAGCGGTAGCGCAGCGGTGCG- 57
* ** ** *** ** * *** ** ** * * * * * * * **
consensus_382#0 CCACCATCAAGAAGATATTCAACCTCAGCTCCGACTTCCTCACCAGGAGGGATGCGTGGG 1260
consensus_382#1 -CGCCGATG-GCCGTTGTTGCCCGGCCGATCC--CGTCCTTTCCGGTCGGGCGCCGTCCC 113
* ** * * * ** * * * *** * **** ** * *** ***
consensus_382#0 CGGGCACCTTCGAGCACCTCTTCACGGACCTGGACGAGCCAAGGACGGATTGCCCGGAGA 1320
consensus_382#1 CGGGCCCGTCCCGGAA--TATTGGATAGCGTGGCCCAGCCTGCGGCGGGTGCGGACCAGA 171
***** * * * * * * ** * *** * **** * *** * ***
consensus_382#0 CATTGCCGGAGATCCCGCCGCCATCTTCCTCGTCGTCGTCGACCAAGAAAGAAGACGGAG 1380
consensus_382#1 CCTGGCCGGAC-TCTGGCGGGCATCTTCATCCTTGCC-TCGCGCAA-AAAGACGAGCCAG 228
* * ****** ** ** * ******* ** * * * *** *** ***** ** **
consensus_382#0 GATGGCTGTCGGACTTCCAGCGCGAGCTGGTGCAG-CTGGCGGCCTTCCTCAACGGCGAC 1439
consensus_382#1 GGTGCCCGTCCGGCTTCCAGCGCGAG-TGGTGCGATCTGGCGGCATTGATTACCGCCGAA 287
* ** * *** * ************* ****** ******** ** * * ** ***
consensus_382#0 TACATGCTGTCAAGCTTCGCACAGGAGTACGAGTCGAGAATGACGATGACGGTGAAGCAG 1499
consensus_382#1 TGCATCGTGTCCAGCTTGGCCCACGAGTGAGAGTCCAGAATACCTATGACGGTTAAGCAG 347
* *** **** ***** ** ** **** ***** ***** * ******** ******
consensus_382#0 GCGGATGCGTATGTGAGGCGAGCCGTCAAAAGTTTCCTGGAGGCCAGCAAGCGGGCCAAA 1559
consensus_382#1 GCGTATGCGTATGTCAGGCGAGGCGTCAAAAATTTAATGGAGGGCAGCAAGGGGGCCTAA 407
*** ********** ******* ******** *** ****** ******* ***** **
consensus_382#0 CGCTTAGGTGCAAACGACTCCGCCATTGTAACCATGAGACCATCCCTCACTACTGCAACC 1619
consensus_382#1 CGGTTAGGTGCAGGCGGCTCCGCCATTGTATCCCTGAGGCCATCCCTCAGTGCTGCAACC 467
** ********* ** ************* ** **** ********** * ********
consensus_382#0 ACCTGCTGCCCTTAGTTACCTACTGTAGTACACTAAACTAGTCTCTTTATTAATTTAATT 1679
consensus_382#1 ACCTGCTGCCCTTAGTTACCTTCTGTAGTACACTAAACTAGTCTCTTTATTAATTTAATT 527
********************* **************************************
consensus_382#0 AATTACC----------------------------------------------------- 1686
consensus_382#1 AATTACCTACCTTAGCTAATCCAATCCCCTACCCATATACTTACTACTGGAGCACTCCAT 587
*******
consensus_382#0 ------------------------------------------------------------
consensus_382#1 TAGTTTAATTACTGTATATCGATGATCATATATATCACACAGATTTTCAGCCCAAAAAAA 647
consensus_382#0 ----
consensus_382#1 AAAA 651
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||