|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3826#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2411 fasta sequence
[GGCGTGAGTGGTGGTGCGCCTGTCCGCCCCGGGCAGTCGCCTCTCGCCGGCGGCGGGCTTGGACGGCCGGAGATAGGCCGCAAACTCGCGAAGGCGCCTCCGTCGCGGCGGCAGAAGCGGGTGGCGTCCTGTCGGTGGTCGGCGTCCGGGTGGGGGGTTGGGGGAACCCTCGCGGTCGCGGCGGCGGGGATGGTGAAGATAGTGACGTACAACGTGAACGGGCTGCGGCCGCGGGTGGCGCAGCATGGCTCGCTCCGCCGCCTCCTCGACGCCCTCGACGCCGACATCATCTGCTTCCAGGAGACAAAATTGTCGAGGCAGGACTTGTCGGGGGATGTCATCATGGCTGAGGGATACGAGGCTTTTATTTCATGCAATCGTTCATCGAAAGGGCGTGGAGCTTACTCTGGTGTTGCCACGTTTTGCCGGGTAACATCAGCCTTTTCCAGTCAAGAGGTTGCTTTACCAGTAGCAGCTGAGGAAGGCTTTACTGGATTGCAAGAGACTGCAAAGAACAGTGAAACTATTGGGGATTTTGTTCTTGTAACTCCTGTGGAAGAGGAAGGTCTTGGTGAAGTAACAAAAGAAGAGCTGCTCAAGGTGGACAATGAAGGACGTTGTGTAATTACAGATCATGGACATTTTGTTCTTTTTAATATATATGGCCCAGCTGTTGAAGAAGATGATATAGAACGAGTTCGCTTTAAGCTACTATTTTACAAGATACTACAGAGAAGATGGGAACATTTGTTGGCTCTTGGGAAAAGAGTTTTCGTTGTTGGTGATTTGAATATTGCACCTTCTTCAATAGATAGGTGTGATGCCCAACCTGGATTCGAGAAGCAAACGTTTCGGAAATGGTTGAGATCCATGCTGAGAGAACATGGAGGTCCATTTTTTGATGCTTTCCGATCAAAACACCCTGAAAGAGTGGGAGCTTATACCTGTTTTAATCAAAAAGTTGGAGCTGAAGTATACAATTATGGTTCTAGAATTGATCACATTCTCATTTCTGGTGCCTGCTTCCATCACTGCGGTTCTGTGGATGACCACAGCATCTTTCCCTGCCATGTGGAAGAATGTGAAATTATGGATCATTTCAGAAGAGGGAATAGCGAAAATATGTCAATGTGGAAAGGAGGGAGAAGTAGTAAGCTAGAAGGATCAGATCATATTCCAGTTTATATTGTGCTGAATGAGATACCTGAACTTCCAGTTCATAACACTCCTTCATCAGCTGCTAGATATCTTCCTGAAATCCGTGGACGGCAACAGAGCATAGTATCATTCCTAAGGAAAGGCATGATTTATGAACATAAAGATGCCATGTCCATGGATAGAGCAGATGAAAGCTGCTGTGGTGGTGGCTTGGAAAGGAAAGCTATATATAAGGAAGAACCACCAACTGATATAGCCAAATTTTCCAAAGGTAACGACCTTCATAGTGTCATCAAGCGGAAAATTCGTGATCAATTGTTAAATGAAGGTTCAAGTGGCAACTCCCATAATAGCACTGCAGCATTACTGGCAACACAAAGTAGAAAAGCTTCCTTTTCTTGCAGCAAGGCTGTGTCCAACAAGAAAAACAAACATAACTTGTCTTCCCAACCTACGATCAAGTCATTTTTTCAACAACCAAAGTCAAAGCCAGGAGATAGCAGTACCAATAGCATAGTTACTCCACCAGATACTTTGCATGGTATGGATGAATTACATGATCCAAAGAATGACTGTCTGCCAGAAAGCATCCAGTGTACAACTCCAGCAACCGAAGATCAGGGTAACTCAGATGTACCCTGCTCGCTTTCAACAGATAAATGCAATGAAGCAACACTGGAGTGGCAAAGAATACAGCAGAGAATGAAGATGACCCTACCACTTTGCAAAGGACACCATGAACCTTGCATTCCAAGGTCTGTGAAGAAAGGCTCTAATATTGGTCGCCTATTCTATGTCTGTGCCCGTGCTCAGGGACCTGCATCAAACCAAGAAGCAAATTGTGGTCACTTTCAGTGGGCCACTGTTAAGTCTAAAGAGAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACTCCTGGACATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTTCTTCTCGGGAGCAAGCTGGTATTTGAGTCAGCAACTCGGCATTAATCTCTAGTTATGCATTACGCAGGTACATAATTTAATTTTGTGTTTAATTTAGATGGCTACCATGGCCTCCTTTGTTGTTTACATATGTTATATTGTTTGGTCAAATGCCACCTTGTAGCTTTCTCGTAGTTTTGTTTTCTCGGGTTTGGCTAGCTTATGTTTGCAACTACCCTTGGATGTATTAATTGAAAAACTAGCTGAGAAGCATGAAAAGAAATCAAGTGAAGTAA]
[+] EMBL AK103074 [GGCGTGAGTGGTGGTGCGCCTGTCCGCCCCGGGCAGTCGCCTCTCGCCGGCGGCGGGCTTGGACGGCCGGAGATAGGCCGCAAACTCGCGAAGGCGCCTCCGTCGCGGCGGCAGAAGCGGGTGGCGTCCTGTCGGTGGTCGGCGTCCGGGTGGGGGGTTGGGGGAACCCTCGCGGTCGCGGCGGCGGGGATGGTGAAGATAGTGACGTACAACGTGAACGGGCTGCGGCCGCGGGTGGCGCAGCATGGCTCGCTCCGCCGCCTCCTCGACGCCCTCGACGCCGACATCATCTGCTTCCAGGAGACAAAATTGTCGAGGCAGGACTTGTCGGGGGATGTCATCATGGCTGAGGGATACGAGGCTTTTATTTCATGCAATCGTTCATCGAAAGGGCGTGGAGCTTACTCTGGTGTTGCCACGTTTTGCCGGGTAACATCAGCCTTTTCCAGTCAAGAGGTTGCTTTACCAGTAGCAGCTGAGGAAGGCTTTACTGGATTGCAAGAGACTGCAAAGAACAGTGAAACTATTGGGGATTTTGTTCTTGTAACTCCTGTGGAAGAGGAAGGTCTTGGTGAAGTAACAAAAGAAGAGCTGCTCAAGGTGGACAATGAAGGACGTTGTGTAATTACAGATCATGGACATTTTGTTCTTTTTAATATATATGGCCCAGCTGTTGAAGAAGATGATATAGAACGAGTTCGCTTTAAGCTACTATTTTACAAGATACTACAGAGAAGATGGGAACATTTGTTGGCTCTTGGGAAAAGAGTTTTCGTTGTTGGTGATTTGAATATTGCACCTTCTTCAATAGATAGGTGTGATGCCCAACCTGGATTCGAGAAGCAAACGTTTCGGAAATGGTTGAGATCCATGCTGAGAGAACATGGAGGTCCATTTTTTGATGCTTTCCGATCAAAACACCCTGAAAGAGTGGGAGCTTATACCTGTTTTAATCAAAAAGTTGGAGCTGAAGTATACAATTATGGTTCTAGAATTGATCACATTCTCATTTCTGGTGCCTGCTTCCATCACTGCGGTTCTGTGGATGACCACAGCATCTTTCCCTGCCATGTGGAAGAATGTGAAATTATGGATCATTTCAGAAGAGGGAATAGCGAAAATATGTCAATGTGGAAAGGAGGGAGAAGTAGTAAGCTAGAAGGATCAGATCATATTCCAGTTTATATTGTGCTGAATGAGATACCTGAACTTCCAGTTCATAACACTCCTTCATCAGCTGCTAGATATCTTCCTGAAATCCGTGGACGGCAACAGAGCATAGTATCATTCCTAAGGAAAGGCATGATTTATGAACATAAAGATGCCATGTCCATGGATAGAGCAGATGAAAGCTGCTGTGGTGGTGGCTTGGAAAGGAAAGCTATATATAAGGAAGAACCACCAACTGATATAGCCAAATTTTCCAAAGGTAACGACCTTCATAGTGTCATCAAGCGGAAAATTCGTGATCAATTGTTAAATGAAGGTTCAAGTGGCAACTCCCATAATAGCACTGCAGCATTACTGGCAACACAAAGTAGAAAAGCTTCCTTTTCTTGCAGCAAGGCTGTGTCCAACAAGAAAAACAAACATAACTTGTCTTCCCAACCTACGATCAAGTCATTTTTTCAACAACCAAAGTCAAAGCCAGGAGATAGCAGTACCAATAGCATAGTTACTCCACCAGATACTTTGCATGGTATGGATGAATTACATGATCCAAAGAATGACTGTCTGCCAGAAAGCATCCAGTGTACAACTCCAGCAACCGAAGATCAGGGTAACTCAGATGTACCCTGCTCGCTTTCAACAGATAAATGCAATGAAGCAACACTGGAGTGGCAAAGAATACAGCAGAGAATGAAGATGACCCTACCACTTTGCAAAGGACACCATGAACCTTGCATTCCAAGGTCTGTGAAGAAAGGCTCTAATATTGGTCGCCTATTCTATGTCTGTGCCCGTGCTCAGGGACCTGCATCAAACCAAGAAGCAAATTGTGGTCACTTTCAGTGGGCCACTGTTAAGTCTAAAGAGAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACTCCTGGACATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTTCTTCTCGGGAGCAAGCTGGTATTTGAGTCAGCAACTCGGCATTAATCTCTAGTTATGCATTACGCAGGTACATAATTTAATTTTGTGTTTAATTTAGATGGCTACCATGGCCTCCTTTGTTGTTTACATATGTTATATTGTTTGGTCAAATGCCACCTTGTAGCTTTCTCGTAGTTTTGTTTTCTCGGGTTTGGCTAGCTTATGTTTGCAACTACCCTTGGATGTATTAATTGAAAAACTAGCTGAGAAGCATGAAAAGAAATCAAGTGAAGTAA]
consensusID : consensus_3826#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence
[AATGGTTGAGATCCATGCTGAGAGAACATGGAGGTCCATTTTTTGATGCTTTCCGATCAAAACACCCTGAAAGAGTGGGAGCTTATACCTGTTTTAATCAAAAAGTTGGAGCTGAAGTATACAATTATGGTTCTAGAATTGATCACATTCTCATTTCTGGTGCCTGCTTCCATCACTGCGGTTCTGTGGATGACCACAGCATCTTTCCCTGCCATGTGGAAGAATGTGAAATTATGGATCATTTCAGAAGAGGGAATAGCGAAAATATGTCAATGTATAGAATGGTCGAAAGTTTTCTTTGCAGGATTTGCAGTGACACATTAGAATTATTTACTATATTACATTGTCCACAGGTGGAAAGGAGGGAGAAGTAGTAAGCTAGAAGGATCAGATCATATTCCAGTTTATATTGTGCTGAATGAGATACCTGAACTTCCAGTTCATAACACTCCTTCATCAGCTGCTAGATATCTTCCTGAAATCCGTGGACGGCAACAGAGCATAGTATCATTCCTAAGGAAAGGCATGATTTATGAACATAAAGATGCCATGTCCATGGATAGAGCAGATGAAAGCTGCTGTGGTGGTGGCTT]
[+] EMBL CF305085 [AATGGTTGAGATCCATGCTGAGAGAACATGGAGGTCCATTTTTTGATGCTTTCCGATCAAAACACCCTGAAAGAGTGGGAGCTTATACCTGTTTTAATCAAAAAGTTGGAGCTGAAGTATACAATTATGGTTCTAGAATTGATCACATTCTCATTTCTGGTGCCTGCTTCCATCACTGCGGTTCTGTGGATGACCACAGCATCTTTCCCTGCCATGTGGAAGAATGTGAAATTATGGATCATTTCAGAAGAGGGAATAGCGAAAATATGTCAATGTATAGAATGGTCGAAAGTTTTCTTTGCAGGATTTGCAGTGACACATTAGAATTATTTACTATATTACATTGTCCACAGGTGGAAAGGAGGGAGAAGTAGTAAGCTAGAAGGATCAGATCATATTCCAGTTTATATTGTGCTGAATGAGATACCTGAACTTCCAGTTCATAACACTCCTTCATCAGCTGCTAGATATCTTCCTGAAATCCGTGGACGGCAACAGAGCATAGTATCATTCCTAAGGAAAGGCATGATTTATGAACATAAAGATGCCATGTCCATGGATAGAGCAGATGAAAGCTGCTGTGGTGGTGGCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3826#0 GGCGTGAGTGGTGGTGCGCCTGTCCGCCCCGGGCAGTCGCCTCTCGCCGGCGGCGGGCTT 60
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 GGACGGCCGGAGATAGGCCGCAAACTCGCGAAGGCGCCTCCGTCGCGGCGGCAGAAGCGG 120
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 GTGGCGTCCTGTCGGTGGTCGGCGTCCGGGTGGGGGGTTGGGGGAACCCTCGCGGTCGCG 180
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 GCGGCGGGGATGGTGAAGATAGTGACGTACAACGTGAACGGGCTGCGGCCGCGGGTGGCG 240
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 CAGCATGGCTCGCTCCGCCGCCTCCTCGACGCCCTCGACGCCGACATCATCTGCTTCCAG 300
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 GAGACAAAATTGTCGAGGCAGGACTTGTCGGGGGATGTCATCATGGCTGAGGGATACGAG 360
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 GCTTTTATTTCATGCAATCGTTCATCGAAAGGGCGTGGAGCTTACTCTGGTGTTGCCACG 420
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 TTTTGCCGGGTAACATCAGCCTTTTCCAGTCAAGAGGTTGCTTTACCAGTAGCAGCTGAG 480
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 GAAGGCTTTACTGGATTGCAAGAGACTGCAAAGAACAGTGAAACTATTGGGGATTTTGTT 540
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 CTTGTAACTCCTGTGGAAGAGGAAGGTCTTGGTGAAGTAACAAAAGAAGAGCTGCTCAAG 600
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 GTGGACAATGAAGGACGTTGTGTAATTACAGATCATGGACATTTTGTTCTTTTTAATATA 660
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 TATGGCCCAGCTGTTGAAGAAGATGATATAGAACGAGTTCGCTTTAAGCTACTATTTTAC 720
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 AAGATACTACAGAGAAGATGGGAACATTTGTTGGCTCTTGGGAAAAGAGTTTTCGTTGTT 780
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 GGTGATTTGAATATTGCACCTTCTTCAATAGATAGGTGTGATGCCCAACCTGGATTCGAG 840
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 AAGCAAACGTTTCGGAAATGGTTGAGATCCATGCTGAGAGAACATGGAGGTCCATTTTTT 900
consensus_3826#1 ----------------AATGGTTGAGATCCATGCTGAGAGAACATGGAGGTCCATTTTTT 44
********************************************
consensus_3826#0 GATGCTTTCCGATCAAAACACCCTGAAAGAGTGGGAGCTTATACCTGTTTTAATCAAAAA 960
consensus_3826#1 GATGCTTTCCGATCAAAACACCCTGAAAGAGTGGGAGCTTATACCTGTTTTAATCAAAAA 104
************************************************************
consensus_3826#0 GTTGGAGCTGAAGTATACAATTATGGTTCTAGAATTGATCACATTCTCATTTCTGGTGCC 1020
consensus_3826#1 GTTGGAGCTGAAGTATACAATTATGGTTCTAGAATTGATCACATTCTCATTTCTGGTGCC 164
************************************************************
consensus_3826#0 TGCTTCCATCACTGCGGTTCTGTGGATGACCACAGCATCTTTCCCTGCCATGTGGAAGAA 1080
consensus_3826#1 TGCTTCCATCACTGCGGTTCTGTGGATGACCACAGCATCTTTCCCTGCCATGTGGAAGAA 224
************************************************************
consensus_3826#0 TGTGAAATTATGGATCATTTCAGAAGAGGGAATAGCGAAAATATGTCAATGT-------- 1132
consensus_3826#1 TGTGAAATTATGGATCATTTCAGAAGAGGGAATAGCGAAAATATGTCAATGTATAGAATG 284
****************************************************
consensus_3826#0 ------------------------------------------------------------
consensus_3826#1 GTCGAAAGTTTTCTTTGCAGGATTTGCAGTGACACATTAGAATTATTTACTATATTACAT 344
consensus_3826#0 -----------GGAAAGGAGGGAGAAGTAGTAAGCTAGAAGGATCAGATCATATTCCAGT 1181
consensus_3826#1 TGTCCACAGGTGGAAAGGAGGGAGAAGTAGTAAGCTAGAAGGATCAGATCATATTCCAGT 404
*************************************************
consensus_3826#0 TTATATTGTGCTGAATGAGATACCTGAACTTCCAGTTCATAACACTCCTTCATCAGCTGC 1241
consensus_3826#1 TTATATTGTGCTGAATGAGATACCTGAACTTCCAGTTCATAACACTCCTTCATCAGCTGC 464
************************************************************
consensus_3826#0 TAGATATCTTCCTGAAATCCGTGGACGGCAACAGAGCATAGTATCATTCCTAAGGAAAGG 1301
consensus_3826#1 TAGATATCTTCCTGAAATCCGTGGACGGCAACAGAGCATAGTATCATTCCTAAGGAAAGG 524
************************************************************
consensus_3826#0 CATGATTTATGAACATAAAGATGCCATGTCCATGGATAGAGCAGATGAAAGCTGCTGTGG 1361
consensus_3826#1 CATGATTTATGAACATAAAGATGCCATGTCCATGGATAGAGCAGATGAAAGCTGCTGTGG 584
************************************************************
consensus_3826#0 TGGTGGCTTGGAAAGGAAAGCTATATATAAGGAAGAACCACCAACTGATATAGCCAAATT 1421
consensus_3826#1 TGGTGGCTT--------------------------------------------------- 593
*********
consensus_3826#0 TTCCAAAGGTAACGACCTTCATAGTGTCATCAAGCGGAAAATTCGTGATCAATTGTTAAA 1481
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 TGAAGGTTCAAGTGGCAACTCCCATAATAGCACTGCAGCATTACTGGCAACACAAAGTAG 1541
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 AAAAGCTTCCTTTTCTTGCAGCAAGGCTGTGTCCAACAAGAAAAACAAACATAACTTGTC 1601
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 TTCCCAACCTACGATCAAGTCATTTTTTCAACAACCAAAGTCAAAGCCAGGAGATAGCAG 1661
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 TACCAATAGCATAGTTACTCCACCAGATACTTTGCATGGTATGGATGAATTACATGATCC 1721
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 AAAGAATGACTGTCTGCCAGAAAGCATCCAGTGTACAACTCCAGCAACCGAAGATCAGGG 1781
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 TAACTCAGATGTACCCTGCTCGCTTTCAACAGATAAATGCAATGAAGCAACACTGGAGTG 1841
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 GCAAAGAATACAGCAGAGAATGAAGATGACCCTACCACTTTGCAAAGGACACCATGAACC 1901
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 TTGCATTCCAAGGTCTGTGAAGAAAGGCTCTAATATTGGTCGCCTATTCTATGTCTGTGC 1961
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 CCGTGCTCAGGGACCTGCATCAAACCAAGAAGCAAATTGTGGTCACTTTCAGTGGGCCAC 2021
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 TGTTAAGTCTAAAGAGAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACAC 2081
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 TCACTCCTGGACATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTTCTTCT 2141
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 CGGGAGCAAGCTGGTATTTGAGTCAGCAACTCGGCATTAATCTCTAGTTATGCATTACGC 2201
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 AGGTACATAATTTAATTTTGTGTTTAATTTAGATGGCTACCATGGCCTCCTTTGTTGTTT 2261
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 ACATATGTTATATTGTTTGGTCAAATGCCACCTTGTAGCTTTCTCGTAGTTTTGTTTTCT 2321
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 CGGGTTTGGCTAGCTTATGTTTGCAACTACCCTTGGATGTATTAATTGAAAAACTAGCTG 2381
consensus_3826#1 ------------------------------------------------------------
consensus_3826#0 AGAAGCATGAAAAGAAATCAAGTGAAGTAA 2411
consensus_3826#1 ------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||