These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3830#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [CAAAAATCTTTGGAATTTCAAAAAAAAAAAATCAAAAGCCCGAATTTGGAAAAAATACTGGGGACCTAAAAATAAATACTGGCAGTAGTTAGTCATGAGTTTTGTTGACCAAAAAATAAAAAATTCCCTTGGGGTTGTTGAATAAGTTGGATGGGGGGGCATACTCTGCCAGCTTTCCCTTGGCCAGCACCAAAACACGAACACTGTCGATGATGGGGTTGATTCTGTGCCCTTTGGGCACCACTGTTTGCTTCGAAAACTCTGTCCTGATGGGCTTCTGGATCAAAAAGTCTGTCTCATAGTCAACAGCCGCTGGGGCTTCGTCCATGACCAAAACTCGAGAGTTTCTCAAAAGTGCTCTTCCCAGGCACAAAAGTTGCCGCTGTCCCAAACTCAA] [+] EMBL BI305491 [CAAAAATCTTTGGAATTTCAAAAAAAAAAAATCAAAAGCCCGAATTTGGAAAAAATACTGGGGACCTAAAAATAAATACTGGCAGTAGTTAGTCATGAGTTTTGTTGACCAAAAAATAAAAAATTCCCTTGGGGTTGTTGAATAAGTTGGATGGGGGGGCATACTCTGCCAGCTTTCCCTTGGCCAGCACCAAAACACGAACACTGTCGATGATGGGGTTGATTCTGTGCCCTTTGGGCACCACTGTTTGCTTCGAAAACTCTGTCCTGATGGGCTTCTGGATCAAAAAGTCTGTCTCATAGTCAACAGCCGCTGGGGCTTCGTCCATGACCAAAACTCGAGAGTTTCTCAAAAGTGCTCTTCCCAGGCACAAAAGTTGCCGCTGTCCCAAACTCAA] consensusID : consensus_3830#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence [CAAAAATCTTTGGAATATCAAAAAAAAAAAATCAAAAGCGCGAATATGGAAAAAATACTGTGGACATAAAAATAGATACTGTCAGTAGTTAGTCATGAGTATTGTTGACGAGAGAATAGAAGATTCCATTGGTGTTGTTGAGTAAGTGGGATGGGGTGTCATACTCTGCCAGCTTTCCCTTGTCCAGCACCAGAACACGATCACTGTCGATGATGGTGTTGATTCTGTGCGCTATGGTCACCACTGTTTGCTTCGAGAACTCTGTCCTGATGGTCTTCTGGATCAAAGAGTCTGTCTCATAGTCAACAGCCGCTGTGGCTTCGTCCATGACCAAGACTCGAGAGTTTCTCAGAAGTGCTCTTCCCAGGCACAGAAGTTGCCGCTGTCCCAAACT] [+] EMBL CB965572 [CAAAAATCTTTGGAATATCAAAAAAAAAAAATCAAAAGCGCGAATATGGAAAAAATACTGTGGACATAAAAATAGATACTGTCAGTAGTTAGTCATGAGTATTGTTGACGAGAGAATAGAAGATTCCATTGGTGTTGTTGAGTAAGTGGGATGGGGTGTCATACTCTGCCAGCTTTCCCTTGTCCAGCACCAGAACACGATCACTGTCGATGATGGTGTTGATTCTGTGCGCTATGGTCACCACTGTTTGCTTCGAGAACTCTGTCCTGATGGTCTTCTGGATCAAAGAGTCTGTCTCATAGTCAACAGCCGCTGTGGCTTCGTCCATGACCAAGACTCGAGAGTTTCTCAGAAGTGCTCTTCCCAGGCACAGAAGTTGCCGCTGTCCCAAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3830#0 CAAAAATCTTTGGAATTTCAAAAAAAAAAAATCAAAAGCCCGAATTTGGAAAAAATACTG 60 consensus_3830#1 CAAAAATCTTTGGAATATCAAAAAAAAAAAATCAAAAGCGCGAATATGGAAAAAATACTG 60 **************** ********************** ***** ************** consensus_3830#0 GGGACCTAAAAATAAATACTGGCAGTAGTTAGTCATGAGTTTTGTTGACCAAAAAATAAA 120 consensus_3830#1 TGGACATAAAAATAGATACTGTCAGTAGTTAGTCATGAGTATTGTTGACGAGAGAATAGA 120 **** ******** ****** ****************** ******** * * **** * consensus_3830#0 AAATTCCCTTGGGGTTGTTGAATAAGTTGGATGGGGGGGCATACTCTGCCAGCTTTCCCT 180 consensus_3830#1 AGATTCCATTGGTGTTGTTGAGTAAGTGGGATGGGGTGTCATACTCTGCCAGCTTTCCCT 180 * ***** **** ******** ***** ******** * ********************* consensus_3830#0 TGGCCAGCACCAAAACACGAACACTGTCGATGATGGGGTTGATTCTGTGCCCTTTGGGCA 240 consensus_3830#1 TGTCCAGCACCAGAACACGATCACTGTCGATGATGGTGTTGATTCTGTGCGCTATGGTCA 240 ** ********* ******* *************** ************* ** *** ** consensus_3830#0 CCACTGTTTGCTTCGAAAACTCTGTCCTGATGGGCTTCTGGATCAAAAAGTCTGTCTCAT 300 consensus_3830#1 CCACTGTTTGCTTCGAGAACTCTGTCCTGATGGTCTTCTGGATCAAAGAGTCTGTCTCAT 300 **************** **************** ************* ************ consensus_3830#0 AGTCAACAGCCGCTGGGGCTTCGTCCATGACCAAAACTCGAGAGTTTCTCAAAAGTGCTC 360 consensus_3830#1 AGTCAACAGCCGCTGTGGCTTCGTCCATGACCAAGACTCGAGAGTTTCTCAGAAGTGCTC 360 *************** ****************** **************** ******** consensus_3830#0 TTCCCAGGCACAAAAGTTGCCGCTGTCCCAAACTCAA 397 consensus_3830#1 TTCCCAGGCACAGAAGTTGCCGCTGTCCCAAACT--- 394 ************ ********************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||