cluster # 3832

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Oryza sativa
cluster # 3832 cluster # 3832 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3832#0 length = 188 sequences # 1

consensus_3832#1 length = 180 sequences # 1

consensusID : consensus_3832#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 188
fasta sequence

                              [CGAATCTCTTCTGTCCCCTTCCACCACCGTCCCCCCACAGGAGATGCTGCGCTGCCACACGCCGCCGCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGCTGAGGCAGNGGANANGTGTGGCGGTGCGGTGCCGTGNGCANAGGTNTCCGGGGTCGAGGCGGCGGCGGGGACACCGGC]

[+] EMBL OSR1912A             [CGAATCTCTTCTGTCCCCTTCCACCACCGTCCCCCCACAGGAGATGCTGCGCTGCCACACGCCGCCGCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGCTGAGGCAGNGGANANGTGTGGCGGTGCGGTGCCGTGNGCANAGGTNTCCGGGGTCGAGGCGGCGGCGGGGACACCGGC]




>consensus_3832#0
CGAATCTCTTCTGTCCCCTTCCACCACCGTCCCCCCACAGGAGATGCTGCGCTGCCACAC
GCCGCCGCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGCTGAGGCAGNG
GANANGTGTGGCGGTGCGGTGCCGTGNGCANAGGTNTCCGGGGTCGAGGCGGCGGCGGGG
ACACCGGC

consensusID : consensus_3832#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 180
fasta sequence

                              [TCGAATCTCTTCTGTCCCCTTACACCACCGTCCCCCCACAGGAGATGCTGCGCTGNCACANGNCGCCNCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGNTGAGACAGCGAANAGGNNTGGCGGTGCGTTGCCGNGNNCANAGGTNTCCGGGGTCGAGGCGGCGGCGNG]

[+] EMBL OSR1913A             [TCGAATCTCTTCTGTCCCCTTACACCACCGTCCCCCCACAGGAGATGCTGCGCTGNCACANGNCGCCNCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGNTGAGACAGCGAANAGGNNTGGCGGTGCGTTGCCGNGNNCANAGGTNTCCGGGGTCGAGGCGGCGGCGNG]




>consensus_3832#1
TCGAATCTCTTCTGTCCCCTTACACCACCGTCCCCCCACAGGAGATGCTGCGCTGNCACA
NGNCGCCNCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGNTGAGACAGC
GAANAGGNNTGGCGGTGCGTTGCCGNGNNCANAGGTNTCCGGGGTCGAGGCGGCGGCGNG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3832#0      -CGAATCTCTTCTGTCCCCTTCCACCACCGTCCCCCCACAGGAGATGCTGCGCTGCCACA 59
consensus_3832#1      TCGAATCTCTTCTGTCCCCTTACACCACCGTCCCCCCACAGGAGATGCTGCGCTGNCACA 60
                       ******************** ********************************* ****

consensus_3832#0      CGCCGCCGCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGCTGAGGCAGN 119
consensus_3832#1      NGNCGCCNCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGNTGAGACAGC 120
                       * **** ****************************************** **** *** 

consensus_3832#0      GGANANGTGTGGCGGTGCGGTGCCGTGNGCANAGGTNTCCGGGGTCGAGGCGGCGGCGGG 179
consensus_3832#1      GAANAGGNNTGGCGGTGCGTTGCCGNGNNCANAGGTNTCCGGGGTCGAGGCGGCGGCGNG 180
                      * *** *  ********** ***** ** ***************************** *

consensus_3832#0      GACACCGGC 188
consensus_3832#1      ---------