These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3867#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1175 fasta sequence [AGGAACCAACGATTCTCTCTTCTTAAACAACCTATATACTCCACACTTAACCAGCATTTGATAGATTATCCAACTCCGAGCAATCTTAGTTATTGGTGGGGGTTCGGTTCGTTAGCAGGTATTTGTTTAGTCATTCAGATAGTGACTGGCGTTTTTTTAGCTATGCATTACACACCTCATGTGGATCTAGCTTTCAACAGCGTAGAACACATTATGAGAGATGTTGAAGGGGGCTGGTTGCTCCGTTATATGCATGCTAATGGGGCAAGTATGTTTTTCATTGTGGTTTACCTTCATATTTTTCGTGGTCTATATTATGCGAGTTATAGCAGTCCTAGGGAATTTGTTTGGTGTCTCGGAGTTGTCATATTCCTATTAATGATTGTGACAGCTTTTATAGGATACGTACTACCTTGGGGTCAGATGAGCTTTTGGGGAGCAACAGTAATTACAAGCTTAGCTAGCGCCATACCAGTAGTAGGAGATACCATAGTGACTTGGCTTTGGGGTGGTTTCTCCGTGGACAATGCCACCTTAAATCGTTTTTTTAGTCTTCATTATTTACTCCCCTTTATTTTAGTAGGCGCCAGTCTTCTTCATCTGGCTGCATTGCATCAATATGGATCAAATAATCCATTGGGTGTACATTCTGAGATGGATAAAATAGCTTTTTACCCTTATTTTTATGTAAAGGATCTTGTAGGTTGGGTAGCTTTTGCTATCTTTTTTTCCATTTGGATTTTTTTTGCTCCTAATGTTTTGGGGCATCCCGACAATTATATACCTGCTAATCCGATGTCCACCCCGCCTCATATTGTGCCGGAATGGTATTTCCTACCGATCTATGCCATTCTTCGCAGTATACCTGACAAAGCGGGAGGTGTAGCCGCAATAGCACTAGTTTTTATATCTCTCTTGGCTTTACCTTTTTTTAAAGAAATGTATGTGCGTAGTTCAAGTTTTCGACCGATTTACCAAGGAATATTTTGGTTGCTTTTGGCGGATTGCTTACTACTAGGTTGGATCGGATGTCAACCTGTGGAGGCACCATTTGTTACTATTGGACAAATTTCTTCTTTCTTTTTCTTTTTGTTCTTTGCCATAACGCCTATTCTGGGACGAGTTGGAAGAGGAATTCCAAAATATTACACGGATGAGACTCATCGCACCGGATC] [+] EMBL MIOS83009 [AGGAACCAACGATTCTCTCTTCTTAAACAACCTATATACTCCACACTTAACCAGCATTTGATAGATTATCCAACTCCGAGCAATCTTAGTTATTGGTGGGGGTTCGGTTCGTTAGCAGGTATTTGTTTAGTCATTCAGATAGTGACTGGCGTTTTTTTAGCTATGCATTACACACCTCATGTGGATCTAGCTTTCAACAGCGTAGAACACATTATGAGAGATGTTGAAGGGGGCTGGTTGCTCCGTTATATGCATGCTAATGGGGCAAGTATGTTTTTCATTGTGGTTTACCTTCATATTTTTCGTGGTCTATATTATGCGAGTTATAGCAGTCCTAGGGAATTTGTTTGGTGTCTCGGAGTTGTCATATTCCTATTAATGATTGTGACAGCTTTTATAGGATACGTACTACCTTGGGGTCAGATGAGCTTTTGGGGAGCAACAGTAATTACAAGCTTAGCTAGCGCCATACCAGTAGTAGGAGATACCATAGTGACTTGGCTTTGGGGTGGTTTCTCCGTGGACAATGCCACCTTAAATCGTTTTTTTAGTCTTCATTATTTACTCCCCTTTATTTTAGTAGGCGCCAGTCTTCTTCATCTGGCTGCATTGCATCAATATGGATCAAATAATCCATTGGGTGTACATTCTGAGATGGATAAAATAGCTTTTTACCCTTATTTTTATGTAAAGGATCTTGTAGGTTGGGTAGCTTTTGCTATCTTTTTTTCCATTTGGATTTTTTTTGCTCCTAATGTTTTGGGGCATCCCGACAATTATATACCTGCTAATCCGATGTCCACCCCGCCTCATATTGTGCCGGAATGGTATTTCCTACCGATCTATGCCATTCTTCGCAGTATACCTGACAAAGCGGGAGGTGTAGCCGCAATAGCACTAGTTTTTATATCTCTCTTGGCTTTACCTTTTTTTAAAGAAATGTATGTGCGTAGTTCAAGTTTTCGACCGATTTACCAAGGAATATTTTGGTTGCTTTTGGCGGATTGCTTACTACTAGGTTGGATCGGATGTCAACCTGTGGAGGCACCATTTGTTACTATTGGACAAATTTCTTCTTTCTTTTTCTTTTTGTTCTTTGCCATAACGCCTATTCTGGGACGAGTTGGAAGAGGAATTCCAAAATATTACACGGATGAGACTCATCGCACCGGATC] consensusID : consensus_3867#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence [GAGTTATTTTACACAATGAATTTACAAGCAGAATTGATCACTGATCAGGTGTGATCAGTCTCATCCGTCTAAGAGACTGATCCGGTGCGATGAGTCTCATCCGTGTAATATTTTGGAATTCCTCTTCCAACTCGTCCCAGAATAGGCGTTATGGCAAAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU183676 [GAGTTATTTTACACAATGAATTTACAAGCAGAATTGATCACTGATCAGGTGTGATCAGTCTCATCCGTCTAAGAGACTGATCCGGTGCGATGAGTCTCATCCGTGTAATATTTTGGAATTCCTCTTCCAACTCGTCCCAGAATAGGCGTTATGGCAAAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3867#0 AGGAACCAACGATTCTCTCTTCTTAAACAACCTATATACTCCACACTTAACCAGCATTTG 60 consensus_3867#1 ------------------------------------------------------------ consensus_3867#0 ATAGATTATCCAACTCCGAGCAATCTTAGTTATTGGTGGGGGTTCGGTTCGTTAGCAGGT 120 consensus_3867#1 ------------------------------------------------------------ consensus_3867#0 ATTTGTTTAGTCATTCAGATAGTGACTGGCGTTTTTTTAGCTATGCATTACACACCTCAT 180 consensus_3867#1 ------------------------------------------------------------ consensus_3867#0 GTGGATCTAGCTTTCAACAGCGTAGAACACATTATGAGAGATGTTGAAGGGGGCTGGTTG 240 consensus_3867#1 ------------------------------------------------------------ consensus_3867#0 CTCCGTTATATGCATGCTAATGGGGCAAGTATGTTTTTCATTGTGG-TTTACCTTCATAT 299 consensus_3867#1 --------------------------GAGT-TATTTTACACAATGAATTTACAAGCAGAA 33 *** * **** ** ** ***** ** * consensus_3867#0 TTT-TCGTGGTCTATATTATGCGAGTTATAGCAGTCCTAGGGAATTTGTTTGGTGTCTCG 358 consensus_3867#1 TTGATCACTGATCAGGTGTGATCAGTCTCATCCGTC-TAAGAGACTGATCCGGTGCGATG 92 ** ** * * * *** * * *** ** * * * * **** * consensus_3867#0 GAGTTGTCATATTCCTATTAATGATTGTGACAGCTTTTATAGGATACGTACTACCTTGGG 418 consensus_3867#1 A----GTCTCATCCGTGT-AAT-ATTTTGGAATTCCTCTTCCAACTCGTCCCA------G 140 *** ** * * * *** *** ** * * * * *** * * * consensus_3867#0 GTCAGATGAGCTTTTGGGGAGCAACAGTAATTACAAGCTTAGCTAGCGCCATACCAGTAG 478 consensus_3867#1 AATAGGCG---TTATGGCAAAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 197 ** * ** *** * **** ** * ** * * * * * * consensus_3867#0 TAGGAGATACCATAGTGACTTGGCTTTGGGGTGGTTTCTCCGTGGACAATGCCACCTTAA 538 consensus_3867#1 AAAAAAAAAAAAAAAAAA------------------------------------------ 215 * * * * * * * consensus_3867#0 ATCGTTTTTTTAGTCTTCATTATTTACTCCCCTTTATTTTAGTAGGCGCCAGTCTTCTTC 598 consensus_3867#1 ------------------------------------------------------------ consensus_3867#0 ATCTGGCTGCATTGCATCAATATGGATCAAATAATCCATTGGGTGTACATTCTGAGATGG 658 consensus_3867#1 ------------------------------------------------------------ consensus_3867#0 ATAAAATAGCTTTTTACCCTTATTTTTATGTAAAGGATCTTGTAGGTTGGGTAGCTTTTG 718 consensus_3867#1 ------------------------------------------------------------ consensus_3867#0 CTATCTTTTTTTCCATTTGGATTTTTTTTGCTCCTAATGTTTTGGGGCATCCCGACAATT 778 consensus_3867#1 ------------------------------------------------------------ consensus_3867#0 ATATACCTGCTAATCCGATGTCCACCCCGCCTCATATTGTGCCGGAATGGTATTTCCTAC 838 consensus_3867#1 ------------------------------------------------------------ consensus_3867#0 CGATCTATGCCATTCTTCGCAGTATACCTGACAAAGCGGGAGGTGTAGCCGCAATAGCAC 898 consensus_3867#1 ------------------------------------------------------------ consensus_3867#0 TAGTTTTTATATCTCTCTTGGCTTTACCTTTTTTTAAAGAAATGTATGTGCGTAGTTCAA 958 consensus_3867#1 ------------------------------------------------------------ consensus_3867#0 GTTTTCGACCGATTTACCAAGGAATATTTTGGTTGCTTTTGGCGGATTGCTTACTACTAG 1018 consensus_3867#1 ------------------------------------------------------------ consensus_3867#0 GTTGGATCGGATGTCAACCTGTGGAGGCACCATTTGTTACTATTGGACAAATTTCTTCTT 1078 consensus_3867#1 ------------------------------------------------------------ consensus_3867#0 TCTTTTTCTTTTTGTTCTTTGCCATAACGCCTATTCTGGGACGAGTTGGAAGAGGAATTC 1138 consensus_3867#1 ------------------------------------------------------------ consensus_3867#0 CAAAATATTACACGGATGAGACTCATCGCACCGGATC 1175 consensus_3867#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||