cluster # 387

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Oryza sativa
cluster # 387 cluster # 387 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_387#0 length = 585 sequences # 1

consensus_387#1 length = 582 sequences # 1

consensusID : consensus_387#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [CGAGACAAGGGGGATCACAGATTCACCAACCAGAAGACTACTCCCGTCGTCATCTGTGTGAGGCTAGCTAGCTCTAGCTCGATCGATCGACATGGCGAAAGCTAGGGTGAACCTGACCGTCCTCGGCCTGTCGTCTCTGGTGGCTCTCCTCGTCCTCATCATCGCCGTCGAGGATGTCGCCGTCGTCGCGCAGGTCATCGACTACTCGTCCATGAATCGCGACCATATCCCTGGAACACCGCAGCTCAACCACCCCGGCGACATCGCTAACAAATACACGCGTGGATGTGAGAAAGAGCAGGCGTGCAGGGATAGCAAGATGACATGATCGATCGATCGATTGATCACTGATGCTATAGCGATGCACGTTCGTTTGGAATTAAACTTCGTTTGGTGCTATATAGGGGAGCTTTTCGATAATATAAGTATTGTAACAGCAAATTCTTATGTGGGTTAGTAATGATTTCTCTCTCTCTATATATATAGTTGCAGCTTTGGCAAAATTTGCCATGATCTTTGCTAGAAAGCATTGTAAGAATGTGGATCTGTTGATGGATGTATACCACAAAATTATATATGGTGTTT]

[+] EMBL CB096322             [CGAGACAAGGGGGATCACAGATTCACCAACCAGAAGACTACTCCCGTCGTCATCTGTGTGAGGCTAGCTAGCTCTAGCTCGATCGATCGACATGGCGAAAGCTAGGGTGAACCTGACCGTCCTCGGCCTGTCGTCTCTGGTGGCTCTCCTCGTCCTCATCATCGCCGTCGAGGATGTCGCCGTCGTCGCGCAGGTCATCGACTACTCGTCCATGAATCGCGACCATATCCCTGGAACACCGCAGCTCAACCACCCCGGCGACATCGCTAACAAATACACGCGTGGATGTGAGAAAGAGCAGGCGTGCAGGGATAGCAAGATGACATGATCGATCGATCGATTGATCACTGATGCTATAGCGATGCACGTTCGTTTGGAATTAAACTTCGTTTGGTGCTATATAGGGGAGCTTTTCGATAATATAAGTATTGTAACAGCAAATTCTTATGTGGGTTAGTAATGATTTCTCTCTCTCTATATATATAGTTGCAGCTTTGGCAAAATTTGCCATGATCTTTGCTAGAAAGCATTGTAAGAATGTGGATCTGTTGATGGATGTATACCACAAAATTATATATGGTGTTT]




>consensus_387#0
CGAGACAAGGGGGATCACAGATTCACCAACCAGAAGACTACTCCCGTCGTCATCTGTGTG
AGGCTAGCTAGCTCTAGCTCGATCGATCGACATGGCGAAAGCTAGGGTGAACCTGACCGT
CCTCGGCCTGTCGTCTCTGGTGGCTCTCCTCGTCCTCATCATCGCCGTCGAGGATGTCGC
CGTCGTCGCGCAGGTCATCGACTACTCGTCCATGAATCGCGACCATATCCCTGGAACACC
GCAGCTCAACCACCCCGGCGACATCGCTAACAAATACACGCGTGGATGTGAGAAAGAGCA
GGCGTGCAGGGATAGCAAGATGACATGATCGATCGATCGATTGATCACTGATGCTATAGC
GATGCACGTTCGTTTGGAATTAAACTTCGTTTGGTGCTATATAGGGGAGCTTTTCGATAA
TATAAGTATTGTAACAGCAAATTCTTATGTGGGTTAGTAATGATTTCTCTCTCTCTATAT
ATATAGTTGCAGCTTTGGCAAAATTTGCCATGATCTTTGCTAGAAAGCATTGTAAGAATG
TGGATCTGTTGATGGATGTATACCACAAAATTATATATGGTGTTT

consensusID : consensus_387#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence

                              [AGAGGACGAGACAAGGGGGACCCTATAAAATCAGTTATCCATAGCCAACAATTCATCACAGATTCACCAACCAGAAGACTACTCCCGTCGTTATCTGTGTGAGGCTAGCTAGCTCTAGCTCGATCGATTGTCATGGCGAAAGCTAGGGTGAACCTGACCGTCCTCGGCCCGTTGTCTTTGGTGGCTCTCCTCGTCCTCATTATTGCCGTCGAGGAAGTTGCCGTTGTCGCGCAGGTCATTGACTACTTGTCCATGAATCGCGACCATATCCCTGGAACACCGCAGCTCAACCACCCCGGGGACATCGCTAACAAATACACGCGTGGATGTGAGAAAAAGCAGGCGTGCAGGGATAGCAAGATGACATGATCGATCGATCGATTGATCACTGATGCTAAAGCGATGCACGTTCGTTTGGAATTAAACTTCGTTTGGTGCTATATAGGGGAGCTTTTCGATAATATAAGTATTGTAACAGCAAATTTTTATGTGGGTTAGTAATGATTTCTCTCTCTCTATATATATAGTTGCAGCTTTGGCAAAATTTGCCATGATCTTTGCTAGAAAAAAAAAAAAAAAAAA]

[-] EMBL CA760228             [AGAGGACGAGACAAGGGGGACCCTATAAAATCAGTTATCCATAGCCAACAATTCATCACAGATTCACCAACCAGAAGACTACTCCCGTCGTTATCTGTGTGAGGCTAGCTAGCTCTAGCTCGATCGATTGTCATGGCGAAAGCTAGGGTGAACCTGACCGTCCTCGGCCCGTTGTCTTTGGTGGCTCTCCTCGTCCTCATTATTGCCGTCGAGGAAGTTGCCGTTGTCGCGCAGGTCATTGACTACTTGTCCATGAATCGCGACCATATCCCTGGAACACCGCAGCTCAACCACCCCGGGGACATCGCTAACAAATACACGCGTGGATGTGAGAAAAAGCAGGCGTGCAGGGATAGCAAGATGACATGATCGATCGATCGATTGATCACTGATGCTAAAGCGATGCACGTTCGTTTGGAATTAAACTTCGTTTGGTGCTATATAGGGGAGCTTTTCGATAATATAAGTATTGTAACAGCAAATTTTTATGTGGGTTAGTAATGATTTCTCTCTCTCTATATATATAGTTGCAGCTTTGGCAAAATTTGCCATGATCTTTGCTAGAAAAAAAAAAAAAAAAAA]




>consensus_387#1
AGAGGACGAGACAAGGGGGACCCTATAAAATCAGTTATCCATAGCCAACAATTCATCACA
GATTCACCAACCAGAAGACTACTCCCGTCGTTATCTGTGTGAGGCTAGCTAGCTCTAGCT
CGATCGATTGTCATGGCGAAAGCTAGGGTGAACCTGACCGTCCTCGGCCCGTTGTCTTTG
GTGGCTCTCCTCGTCCTCATTATTGCCGTCGAGGAAGTTGCCGTTGTCGCGCAGGTCATT
GACTACTTGTCCATGAATCGCGACCATATCCCTGGAACACCGCAGCTCAACCACCCCGGG
GACATCGCTAACAAATACACGCGTGGATGTGAGAAAAAGCAGGCGTGCAGGGATAGCAAG
ATGACATGATCGATCGATCGATTGATCACTGATGCTAAAGCGATGCACGTTCGTTTGGAA
TTAAACTTCGTTTGGTGCTATATAGGGGAGCTTTTCGATAATATAAGTATTGTAACAGCA
AATTTTTATGTGGGTTAGTAATGATTTCTCTCTCTCTATATATATAGTTGCAGCTTTGGC
AAAATTTGCCATGATCTTTGCTAGAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_387#0      ----------------------------------------CGAGACAAGGGGG-ATCACA 19
consensus_387#1      AGAGGACGAGACAAGGGGGACCCTATAAAATCAGTTATCCATAGCCAACAATTCATCACA 60
                                                               ** ***      ******

consensus_387#0      GATTCACCAACCAGAAGACTACTCCCGTCGTCATCTGTGTGAGGCTAGCTAGCTCTAGCT 79
consensus_387#1      GATTCACCAACCAGAAGACTACTCCCGTCGTTATCTGTGTGAGGCTAGCTAGCTCTAGCT 120
                     ******************************* ****************************

consensus_387#0      CGATCGATCGACATGGCGAAAGCTAGGGTGAACCTGACCGTCCTCGGCCTGTCGTCTCTG 139
consensus_387#1      CGATCGATTGTCATGGCGAAAGCTAGGGTGAACCTGACCGTCCTCGGCCCGTTGTCTTTG 180
                     ******** * ************************************** ** **** **

consensus_387#0      GTGGCTCTCCTCGTCCTCATCATCGCCGTCGAGGATGTCGCCGTCGTCGCGCAGGTCATC 199
consensus_387#1      GTGGCTCTCCTCGTCCTCATTATTGCCGTCGAGGAAGTTGCCGTTGTCGCGCAGGTCATT 240
                     ******************** ** *********** ** ***** ************** 

consensus_387#0      GACTACTCGTCCATGAATCGCGACCATATCCCTGGAACACCGCAGCTCAACCACCCCGGC 259
consensus_387#1      GACTACTTGTCCATGAATCGCGACCATATCCCTGGAACACCGCAGCTCAACCACCCCGGG 300
                     ******* *************************************************** 

consensus_387#0      GACATCGCTAACAAATACACGCGTGGATGTGAGAAAGAGCAGGCGTGCAGGGATAGCAAG 319
consensus_387#1      GACATCGCTAACAAATACACGCGTGGATGTGAGAAAAAGCAGGCGTGCAGGGATAGCAAG 360
                     ************************************ ***********************

consensus_387#0      ATGACATGATCGATCGATCGATTGATCACTGATGCTATAGCGATGCACGTTCGTTTGGAA 379
consensus_387#1      ATGACATGATCGATCGATCGATTGATCACTGATGCTAAAGCGATGCACGTTCGTTTGGAA 420
                     ************************************* **********************

consensus_387#0      TTAAACTTCGTTTGGTGCTATATAGGGGAGCTTTTCGATAATATAAGTATTGTAACAGCA 439
consensus_387#1      TTAAACTTCGTTTGGTGCTATATAGGGGAGCTTTTCGATAATATAAGTATTGTAACAGCA 480
                     ************************************************************

consensus_387#0      AATTCTTATGTGGGTTAGTAATGATTTCTCTCTCTCTATATATATAGTTGCAGCTTTGGC 499
consensus_387#1      AATTTTTATGTGGGTTAGTAATGATTTCTCTCTCTCTATATATATAGTTGCAGCTTTGGC 540
                     **** *******************************************************

consensus_387#0      AAAATTTGCCATGATCTTTGCTAGAAAGCATTGTAAGAATGTGGATCTGTTGATGGATGT 559
consensus_387#1      AAAATTTGCCATGATCTTTGCTAGAAAAAAAAAAAAAAAAAA------------------ 582
                     ***************************  *    ** **                     

consensus_387#0      ATACCACAAAATTATATATGGTGTTT 585
consensus_387#1      --------------------------