cluster # 3875

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Oryza sativa
cluster # 3875 cluster # 3875 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3875#0 length = 1273 sequences # 1

consensus_3875#1 length = 400 sequences # 1

consensusID : consensus_3875#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1273
fasta sequence

                              [TTTTTCCGTCCAAAGTCCGAACCGTCCTTCCACTCGCCGCCTCCTTCCTTCTCTCTCACCGCCGCTCCCACCGCCGCCTGCTTCCCTCTCTCTCGCCGTCGCCTGCTTCCCTCTCTCTCGTCGCCGCCTGCTGCTTCCGCTCGCCTCCCTCTCTCTCCCGCCATCGCCACCGTCTCCCGCCGCCGCCCCCGAATCGAGCGCACGGGGCGGAGGCGGCAGTCGTCGTCGTCTGGTGGCCGGAGCGGCAGATCCGGGGCGGAGGCGACAGTTGTACTCGTCGTCGTCGTCGTCCGGTGGCCGGTCACCGCTCTCTCCCTCTCTCTCTCTCTCTCCCGTGGAAGGTGGCGGCGAAGACCCCGGAGGCGGCAGATCCGGCGCCACCGTGGCCGGATCTGGCCCTCCGGCGGATGGAGCAGCGTCGGCCCCGCCGCATGAAGACGGTGGCGGCGCCGGCGGTAGCTGCATCGACGATGGCGCCGCGCTGGCCGCCGCCACCTCCCTCCTCGCCCTCCCTTCTTCTCTCCGGCGGCGAGCGGCGCCTCCGCCTTGCCCTTGACGCATGGGTCGGTGACAGAGGGGAGAGGGGTGGAAGAGGAAATCAAAGATCGGGTGCGTCGCCTCAAGAACCTCTACCTACGCAGTGGGCTGCTTCGCCCAGTCCCCCTGCCAAAAGTGAGCGAGGGACGCGTTCCCCAGCTGAGGGACGCGTTCCATCGCGAGGGGGCGGTGCGGATGGAAAAGCTAACGGACGGAGCTAGGGGCACGGGTCAAAGGTACGCATTGGTGATGGCCTAATCTCGTTGTTGGATTCAAGCACATCGCAACCGATGTCGCCTCCTCTCGCTGGTTCTCGCGCTCCTCGTTGCCTCCGATGCAGGCGTTGCTGGCCCCCAACGCGCTGTCGTCCAACACCGCACCTCCACACCGTGCGACGTCCCCGGCACCGACCACACCTCCCTCGGCACCAACCACCCCTCCTACTCCTCGTCTTCTCTACCGTCGCGCAACAGCCTCCGACGCAGGCGCCGTCGGTGCCCATCACGCCGCCGTCCAACGCCCCGCCGCCAGCGCCCCCGGCACCGACCACGCCTCCCTTGGCACCACCGGTGCCGACCACCTGAGCACAGTGGTGGAGACACAGTCTGAGAGAATGAGCATCACGAGCTGGACTTAGCTTGTGAGGTTTTCGATCCTACCCTCCAAGAATGAACGGCGGGATTTAGATTGGTATAATATGCTGGACCGGAACAATGCTCTAATCCTAATCCTAATC]

[+] EMBL AK106479             [TTTTTCCGTCCAAAGTCCGAACCGTCCTTCCACTCGCCGCCTCCTTCCTTCTCTCTCACCGCCGCTCCCACCGCCGCCTGCTTCCCTCTCTCTCGCCGTCGCCTGCTTCCCTCTCTCTCGTCGCCGCCTGCTGCTTCCGCTCGCCTCCCTCTCTCTCCCGCCATCGCCACCGTCTCCCGCCGCCGCCCCCGAATCGAGCGCACGGGGCGGAGGCGGCAGTCGTCGTCGTCTGGTGGCCGGAGCGGCAGATCCGGGGCGGAGGCGACAGTTGTACTCGTCGTCGTCGTCGTCCGGTGGCCGGTCACCGCTCTCTCCCTCTCTCTCTCTCTCTCCCGTGGAAGGTGGCGGCGAAGACCCCGGAGGCGGCAGATCCGGCGCCACCGTGGCCGGATCTGGCCCTCCGGCGGATGGAGCAGCGTCGGCCCCGCCGCATGAAGACGGTGGCGGCGCCGGCGGTAGCTGCATCGACGATGGCGCCGCGCTGGCCGCCGCCACCTCCCTCCTCGCCCTCCCTTCTTCTCTCCGGCGGCGAGCGGCGCCTCCGCCTTGCCCTTGACGCATGGGTCGGTGACAGAGGGGAGAGGGGTGGAAGAGGAAATCAAAGATCGGGTGCGTCGCCTCAAGAACCTCTACCTACGCAGTGGGCTGCTTCGCCCAGTCCCCCTGCCAAAAGTGAGCGAGGGACGCGTTCCCCAGCTGAGGGACGCGTTCCATCGCGAGGGGGCGGTGCGGATGGAAAAGCTAACGGACGGAGCTAGGGGCACGGGTCAAAGGTACGCATTGGTGATGGCCTAATCTCGTTGTTGGATTCAAGCACATCGCAACCGATGTCGCCTCCTCTCGCTGGTTCTCGCGCTCCTCGTTGCCTCCGATGCAGGCGTTGCTGGCCCCCAACGCGCTGTCGTCCAACACCGCACCTCCACACCGTGCGACGTCCCCGGCACCGACCACACCTCCCTCGGCACCAACCACCCCTCCTACTCCTCGTCTTCTCTACCGTCGCGCAACAGCCTCCGACGCAGGCGCCGTCGGTGCCCATCACGCCGCCGTCCAACGCCCCGCCGCCAGCGCCCCCGGCACCGACCACGCCTCCCTTGGCACCACCGGTGCCGACCACCTGAGCACAGTGGTGGAGACACAGTCTGAGAGAATGAGCATCACGAGCTGGACTTAGCTTGTGAGGTTTTCGATCCTACCCTCCAAGAATGAACGGCGGGATTTAGATTGGTATAATATGCTGGACCGGAACAATGCTCTAATCCTAATCCTAATC]




>consensus_3875#0
TTTTTCCGTCCAAAGTCCGAACCGTCCTTCCACTCGCCGCCTCCTTCCTTCTCTCTCACC
GCCGCTCCCACCGCCGCCTGCTTCCCTCTCTCTCGCCGTCGCCTGCTTCCCTCTCTCTCG
TCGCCGCCTGCTGCTTCCGCTCGCCTCCCTCTCTCTCCCGCCATCGCCACCGTCTCCCGC
CGCCGCCCCCGAATCGAGCGCACGGGGCGGAGGCGGCAGTCGTCGTCGTCTGGTGGCCGG
AGCGGCAGATCCGGGGCGGAGGCGACAGTTGTACTCGTCGTCGTCGTCGTCCGGTGGCCG
GTCACCGCTCTCTCCCTCTCTCTCTCTCTCTCCCGTGGAAGGTGGCGGCGAAGACCCCGG
AGGCGGCAGATCCGGCGCCACCGTGGCCGGATCTGGCCCTCCGGCGGATGGAGCAGCGTC
GGCCCCGCCGCATGAAGACGGTGGCGGCGCCGGCGGTAGCTGCATCGACGATGGCGCCGC
GCTGGCCGCCGCCACCTCCCTCCTCGCCCTCCCTTCTTCTCTCCGGCGGCGAGCGGCGCC
TCCGCCTTGCCCTTGACGCATGGGTCGGTGACAGAGGGGAGAGGGGTGGAAGAGGAAATC
AAAGATCGGGTGCGTCGCCTCAAGAACCTCTACCTACGCAGTGGGCTGCTTCGCCCAGTC
CCCCTGCCAAAAGTGAGCGAGGGACGCGTTCCCCAGCTGAGGGACGCGTTCCATCGCGAG
GGGGCGGTGCGGATGGAAAAGCTAACGGACGGAGCTAGGGGCACGGGTCAAAGGTACGCA
TTGGTGATGGCCTAATCTCGTTGTTGGATTCAAGCACATCGCAACCGATGTCGCCTCCTC
TCGCTGGTTCTCGCGCTCCTCGTTGCCTCCGATGCAGGCGTTGCTGGCCCCCAACGCGCT
GTCGTCCAACACCGCACCTCCACACCGTGCGACGTCCCCGGCACCGACCACACCTCCCTC
GGCACCAACCACCCCTCCTACTCCTCGTCTTCTCTACCGTCGCGCAACAGCCTCCGACGC
AGGCGCCGTCGGTGCCCATCACGCCGCCGTCCAACGCCCCGCCGCCAGCGCCCCCGGCAC
CGACCACGCCTCCCTTGGCACCACCGGTGCCGACCACCTGAGCACAGTGGTGGAGACACA
GTCTGAGAGAATGAGCATCACGAGCTGGACTTAGCTTGTGAGGTTTTCGATCCTACCCTC
CAAGAATGAACGGCGGGATTTAGATTGGTATAATATGCTGGACCGGAACAATGCTCTAAT
CCTAATCCTAATC

consensusID : consensus_3875#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 400
fasta sequence

                              [CCGGCGGCGGCGGCGGGCAGTCGTCGTCGTTTGGTGGCCGGAGCAGCAGATCCGGGGCGGAGGCGACCAACGAGCGAGCGGCGCACGGAGCGGAGGCGGCAGTCGTCGTCCCTCTCTCTCTCTCTCCCGTGGAAGGTGGTGGCGGCGACCCCGGAGGCGGCAGATCTGGCGCCGCCGTGGCTGGATCTGGCCCCCCGGCAGATGGAGCGGCGCCGGCCACGCCGCATCGAGACGGTGACGGCGCCGACGGTGGCCACATCGACGATGGCGCCGTCATTCTTCACCGTGCTCGCCGACGCTGCCTCCCTCCTCGCCCTCCCTTCTTCTCTCCGACGGCGAGCGGCCGCATTGAGGAGACTGTGGCGACACCGGCGGTGGCCGCTTCGACATTGGTTGCAAC]

[+] EMBL CB635320             [CCGGCGGCGGCGGCGGGCAGTCGTCGTCGTTTGGTGGCCGGAGCAGCAGATCCGGGGCGGAGGCGACCAACGAGCGAGCGGCGCACGGAGCGGAGGCGGCAGTCGTCGTCCCTCTCTCTCTCTCTCCCGTGGAAGGTGGTGGCGGCGACCCCGGAGGCGGCAGATCTGGCGCCGCCGTGGCTGGATCTGGCCCCCCGGCAGATGGAGCGGCGCCGGCCACGCCGCATCGAGACGGTGACGGCGCCGACGGTGGCCACATCGACGATGGCGCCGTCATTCTTCACCGTGCTCGCCGACGCTGCCTCCCTCCTCGCCCTCCCTTCTTCTCTCCGACGGCGAGCGGCCGCATTGAGGAGACTGTGGCGACACCGGCGGTGGCCGCTTCGACATTGGTTGCAAC]




>consensus_3875#1
CCGGCGGCGGCGGCGGGCAGTCGTCGTCGTTTGGTGGCCGGAGCAGCAGATCCGGGGCGG
AGGCGACCAACGAGCGAGCGGCGCACGGAGCGGAGGCGGCAGTCGTCGTCCCTCTCTCTC
TCTCTCCCGTGGAAGGTGGTGGCGGCGACCCCGGAGGCGGCAGATCTGGCGCCGCCGTGG
CTGGATCTGGCCCCCCGGCAGATGGAGCGGCGCCGGCCACGCCGCATCGAGACGGTGACG
GCGCCGACGGTGGCCACATCGACGATGGCGCCGTCATTCTTCACCGTGCTCGCCGACGCT
GCCTCCCTCCTCGCCCTCCCTTCTTCTCTCCGACGGCGAGCGGCCGCATTGAGGAGACTG
TGGCGACACCGGCGGTGGCCGCTTCGACATTGGTTGCAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3875#0      TTTTTCCGTCCAAAGTCCGAACCGTCCTTCCACTCGCCGCCTCCTTCCTTCTCTCTCACC 60
consensus_3875#1      ------------------------------------------------------------
                                                                                  

consensus_3875#0      GCCGCTCCCACCGCCGCCTGCTTCCCTCTCTCTCGCCGTCGCCTGCTTCCCTCTCTCTCG 120
consensus_3875#1      ------------------------------------------------------------
                                                                                  

consensus_3875#0      TCGCCGCCTGCTGCTTCCGCTCGCCTCCCTCTCTCTCCCGCCATCGCCACCGTCTCCCGC 180
consensus_3875#1      ------------------------------------------------------------
                                                                                  

consensus_3875#0      CGCCGCCCCCGAATCGAGCGCACGGGGCGGAGGCGG-CAGTCGTCGTCGTCTGGTGGCCG 239
consensus_3875#1      --------------------CCGGCGGCGGCGGCGGGCAGTCGTCGTCGTTTGGTGGCCG 40
                                          *  * ***** ***** ************* *********

consensus_3875#0      GAGCGGCAGATCCGGGGCGGAGGCGACAGTTGTACTCGTCGTCGTCGTCGTCCGGTGGCC 299
consensus_3875#1      GAGCAGCAGATCCGGGGCGGAGGCGACCAACGAGCGAG-------CGGCGCACGGAGCGG 93
                      **** **********************    *  *  *       ** **  *** *   

consensus_3875#0      GGTCACCGCTCTCTCCCTCTCTCTCTCTCTCTCCCGTGGAAGGTGGCGGCGAAGACCCCG 359
consensus_3875#1      AGGCGGCAGTCGTCGTCCCTCTCTCTCTCTCTCCCGTGGAAGGTGGTGGCGGCGACCCCG 153
                       * *  *  **     * **************************** ****  *******

consensus_3875#0      GAGGCGGCAGATCCGGCGCCACCGTGGCCGGATCTGGCCCTCCGGCGGATGGAGCAGCGT 419
consensus_3875#1      GAGGCGGCAGATCTGGCGCCGCCGTGGCTGGATCTGGCCCCCCGGCAGATGGAGCGGCGC 213
                      ************* ****** ******* *********** ***** ******** *** 

consensus_3875#0      CGGCCCCGCCGCATGAAGACGGTGGCGGCGCCGGCGGTAGCTGCATCGACGATGGCGCCG 479
consensus_3875#1      CGGCCACGCCGCATCGAGACGGTGACGGCGCCGACGGTGGCCACATCGACGATGGCGCCG 273
                      ***** ********  ******** ******** **** **  *****************

consensus_3875#0      C-------------GCTGGCCGCCGCCACCTCCCTCCTCGCCCTCCCTTCTTCTCTCCGG 526
consensus_3875#1      TCATTCTTCACCGTGCTCGCCGACGCTGCCTCCCTCCTCGCCCTCCCTTCTTCTCTCCGA 333
                                    *** **** ***  ******************************* 

consensus_3875#0      CGGCGAGCGGCGCCTCCGCCTTGCCCTTGACGCATGGGTCGGTGACAGAGGGGAGAGGGG 586
consensus_3875#1      CGGCGAGCGGCCGCATTGAGGAGACTGTGGCGACACCGGCGGTGGCCGCTTCGACATTGG 393
                      ***********  *   *    * *  ** **     * ***** * *    ** *  **

consensus_3875#0      TGGAAGAGGAAATCAAAGATCGGGTGCGTCGCCTCAAGAACCTCTACCTACGCAGTGGGC 646
consensus_3875#1      TTGCAAC----------------------------------------------------- 400
                      * * *                                                       

consensus_3875#0      TGCTTCGCCCAGTCCCCCTGCCAAAAGTGAGCGAGGGACGCGTTCCCCAGCTGAGGGACG 706
consensus_3875#1      ------------------------------------------------------------
                                                                                  

consensus_3875#0      CGTTCCATCGCGAGGGGGCGGTGCGGATGGAAAAGCTAACGGACGGAGCTAGGGGCACGG 766
consensus_3875#1      ------------------------------------------------------------
                                                                                  

consensus_3875#0      GTCAAAGGTACGCATTGGTGATGGCCTAATCTCGTTGTTGGATTCAAGCACATCGCAACC 826
consensus_3875#1      ------------------------------------------------------------
                                                                                  

consensus_3875#0      GATGTCGCCTCCTCTCGCTGGTTCTCGCGCTCCTCGTTGCCTCCGATGCAGGCGTTGCTG 886
consensus_3875#1      ------------------------------------------------------------
                                                                                  

consensus_3875#0      GCCCCCAACGCGCTGTCGTCCAACACCGCACCTCCACACCGTGCGACGTCCCCGGCACCG 946
consensus_3875#1      ------------------------------------------------------------
                                                                                  

consensus_3875#0      ACCACACCTCCCTCGGCACCAACCACCCCTCCTACTCCTCGTCTTCTCTACCGTCGCGCA 1006
consensus_3875#1      ------------------------------------------------------------
                                                                                  

consensus_3875#0      ACAGCCTCCGACGCAGGCGCCGTCGGTGCCCATCACGCCGCCGTCCAACGCCCCGCCGCC 1066
consensus_3875#1      ------------------------------------------------------------
                                                                                  

consensus_3875#0      AGCGCCCCCGGCACCGACCACGCCTCCCTTGGCACCACCGGTGCCGACCACCTGAGCACA 1126
consensus_3875#1      ------------------------------------------------------------
                                                                                  

consensus_3875#0      GTGGTGGAGACACAGTCTGAGAGAATGAGCATCACGAGCTGGACTTAGCTTGTGAGGTTT 1186
consensus_3875#1      ------------------------------------------------------------
                                                                                  

consensus_3875#0      TCGATCCTACCCTCCAAGAATGAACGGCGGGATTTAGATTGGTATAATATGCTGGACCGG 1246
consensus_3875#1      ------------------------------------------------------------
                                                                                  

consensus_3875#0      AACAATGCTCTAATCCTAATCCTAATC 1273
consensus_3875#1      ---------------------------