cluster # 3877

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Oryza sativa
cluster # 3877 cluster # 3877 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3877#0 length = 825 sequences # 1

consensus_3877#1 length = 245 sequences # 1

consensusID : consensus_3877#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 825
fasta sequence

                              [CTCACGCCGGCGCCGCGGCGTCTCGTCTCCTCCCACCGCAACCTTTCTTCTTTTGCTTAGCTTTCACTTACACTACCCCTCGCCGCGCCTCGCCGCGCGACGCGGCCCTTTCCCGCCACCAACCCCTCGCCGCGCCCGCCTCGCCTCCGGAGACCGCCGGAGGATGGAAACCTCGCCCGCGCTGCGCCCCGCCCACATCCCCAGATCCACGGCCGTCCGCCCGCCGTGCGCCACCCCTTTCTCCCGCGCCCACTGGCACGCCACCTGCGCCGCCATCCGCCGAGTCCCGCGGGTGAACGGCGACAGCAACAGTAGCATCAAGCCCGCCCTCGCCGACCACGCCGCGCCGCCGCTCGACCTGGATCTGCTCCCCGTCTCCAACCTCCCTCGCCCGCTCACCATCACCGACCTCTCCCCCGCGCCCATGCACGGCAGCCAGCTGCGCGTCGCCTACCAGGGTGTCCCGGGGGCATACAGCGAGGCGGCGGCGGCGAAGGCCTACCCCTCCTGCGACGCCATCCCCTGCGACCAGTTCGAGGTGGCCTTCCAGGCCGTCGAGCTCTGGATCGCCGACCGCGCCGTCCTCCCCGTCGAGAACTCCCTCGGCGGCAGCATCCACCGCAACTACGACCTCCTCCTCCGCCACCGCCTCCACATCGTCGGCGAGGTCCAGCTCCCCGTCCACCACTGCCTCCTCGCGCTCCCGGGCGTCCGCAGGGACCTCCTCACCCGCGTCATCTCCCACCCGCAGGCGCTCGCCCAGTGCGAGCTCACCCTCAACGCCATGGGCCTCAACGTCGCCCGCGAGGCCTTCGACGACACCGC]

[+] EMBL AK066427             [CTCACGCCGGCGCCGCGGCGTCTCGTCTCCTCCCACCGCAACCTTTCTTCTTTTGCTTAGCTTTCACTTACACTACCCCTCGCCGCGCCTCGCCGCGCGACGCGGCCCTTTCCCGCCACCAACCCCTCGCCGCGCCCGCCTCGCCTCCGGAGACCGCCGGAGGATGGAAACCTCGCCCGCGCTGCGCCCCGCCCACATCCCCAGATCCACGGCCGTCCGCCCGCCGTGCGCCACCCCTTTCTCCCGCGCCCACTGGCACGCCACCTGCGCCGCCATCCGCCGAGTCCCGCGGGTGAACGGCGACAGCAACAGTAGCATCAAGCCCGCCCTCGCCGACCACGCCGCGCCGCCGCTCGACCTGGATCTGCTCCCCGTCTCCAACCTCCCTCGCCCGCTCACCATCACCGACCTCTCCCCCGCGCCCATGCACGGCAGCCAGCTGCGCGTCGCCTACCAGGGTGTCCCGGGGGCATACAGCGAGGCGGCGGCGGCGAAGGCCTACCCCTCCTGCGACGCCATCCCCTGCGACCAGTTCGAGGTGGCCTTCCAGGCCGTCGAGCTCTGGATCGCCGACCGCGCCGTCCTCCCCGTCGAGAACTCCCTCGGCGGCAGCATCCACCGCAACTACGACCTCCTCCTCCGCCACCGCCTCCACATCGTCGGCGAGGTCCAGCTCCCCGTCCACCACTGCCTCCTCGCGCTCCCGGGCGTCCGCAGGGACCTCCTCACCCGCGTCATCTCCCACCCGCAGGCGCTCGCCCAGTGCGAGCTCACCCTCAACGCCATGGGCCTCAACGTCGCCCGCGAGGCCTTCGACGACACCGC]




>consensus_3877#0
CTCACGCCGGCGCCGCGGCGTCTCGTCTCCTCCCACCGCAACCTTTCTTCTTTTGCTTAG
CTTTCACTTACACTACCCCTCGCCGCGCCTCGCCGCGCGACGCGGCCCTTTCCCGCCACC
AACCCCTCGCCGCGCCCGCCTCGCCTCCGGAGACCGCCGGAGGATGGAAACCTCGCCCGC
GCTGCGCCCCGCCCACATCCCCAGATCCACGGCCGTCCGCCCGCCGTGCGCCACCCCTTT
CTCCCGCGCCCACTGGCACGCCACCTGCGCCGCCATCCGCCGAGTCCCGCGGGTGAACGG
CGACAGCAACAGTAGCATCAAGCCCGCCCTCGCCGACCACGCCGCGCCGCCGCTCGACCT
GGATCTGCTCCCCGTCTCCAACCTCCCTCGCCCGCTCACCATCACCGACCTCTCCCCCGC
GCCCATGCACGGCAGCCAGCTGCGCGTCGCCTACCAGGGTGTCCCGGGGGCATACAGCGA
GGCGGCGGCGGCGAAGGCCTACCCCTCCTGCGACGCCATCCCCTGCGACCAGTTCGAGGT
GGCCTTCCAGGCCGTCGAGCTCTGGATCGCCGACCGCGCCGTCCTCCCCGTCGAGAACTC
CCTCGGCGGCAGCATCCACCGCAACTACGACCTCCTCCTCCGCCACCGCCTCCACATCGT
CGGCGAGGTCCAGCTCCCCGTCCACCACTGCCTCCTCGCGCTCCCGGGCGTCCGCAGGGA
CCTCCTCACCCGCGTCATCTCCCACCCGCAGGCGCTCGCCCAGTGCGAGCTCACCCTCAA
CGCCATGGGCCTCAACGTCGCCCGCGAGGCCTTCGACGACACCGC

consensusID : consensus_3877#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 245
fasta sequence

                              [CCGGGCTAGTTCTAGATCGCGAGAGGCCGNCCTTTCCCGCCACCCACCCCTCGNCGTCGNCGTCCGCCGGATGATGGAAACTCTGCCCGCGCCGNGCCCCACCCAGATCCCCAGATCCACGGCCATCCGCCCGCCGTGCGCCACCCCCTTCTCCCGCGNCCACTGGCAGACCACCTGCGCCGNCATCCTCGNCACCACCACTACCACCAACGACAAAGCCTATGGCGTCCCGTGGGTGAACGGNG]

[+] EMBL OSS10963A            [CCGGGCTAGTTCTAGATCGCGAGAGGCCGNCCTTTCCCGCCACCCACCCCTCGNCGTCGNCGTCCGCCGGATGATGGAAACTCTGCCCGCGCCGNGCCCCACCCAGATCCCCAGATCCACGGCCATCCGCCCGCCGTGCGCCACCCCCTTCTCCCGCGNCCACTGGCAGACCACCTGCGCCGNCATCCTCGNCACCACCACTACCACCAACGACAAAGCCTATGGCGTCCCGTGGGTGAACGGNG]




>consensus_3877#1
CCGGGCTAGTTCTAGATCGCGAGAGGCCGNCCTTTCCCGCCACCCACCCCTCGNCGTCGN
CGTCCGCCGGATGATGGAAACTCTGCCCGCGCCGNGCCCCACCCAGATCCCCAGATCCAC
GGCCATCCGCCCGCCGTGCGCCACCCCCTTCTCCCGCGNCCACTGGCAGACCACCTGCGC
CGNCATCCTCGNCACCACCACTACCACCAACGACAAAGCCTATGGCGTCCCGTGGGTGAA
CGGNG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3877#0      CTCACGCCGGCGCCGCGGCGTCTCGTCTCCTCCCACCGCAACCTTTCTTCTTTTGCTTAG 60
consensus_3877#1      ------------------------------------------------------------
                                                                                  

consensus_3877#0      CTTTCACTTACACTACCCCTCGCCGCGCCTCG-CCGCGCGACGCGGCCCTTTCCCGCCAC 119
consensus_3877#1      -----------------CCGGGCTAGTTCTAGATCGCGAGAGGCCGNCCTTTCCCGCCAC 43
                                       **  **     ** *  **** ** ** * *************

consensus_3877#0      CAACCCCTCGCCGCGCCCGCCTCGCCTCCGGAGACCGCCGGAGGATGGAAACCTCGCCCG 179
consensus_3877#1      CCACCCCTCGNCGT--------------CGNCGTCCGCCGGATGATGGAAACTCTGCCCG 89
                      * ******** **               **  * ******** *********   *****

consensus_3877#0      CGCTGCGCCCCGCCCACATCCCCAGATCCACGGCCGTCCGCCCGCCGTGCGCCACCCCTT 239
consensus_3877#1      CGCCGNGCCCCACCCAGATCCCCAGATCCACGGCCATCCGCCCGCCGTGCGCCACCCCCT 149
                      *** * ***** **** ****************** ********************** *

consensus_3877#0      TCTCCCGCGCCCACTGGCACGCCACCTGCGCCGCCATCCGCCGAGTCCCGCGGGTGAACG 299
consensus_3877#1      TCTCCCGCGNCCACTGGCAGACCACCTGCGCCGNCATCCTCGNCACCACCACTACCACCA 209
                      ********* *********  ************ ***** *     * *       * * 

consensus_3877#0      GCGACAGCAACAGTAGCATCAAGCCCGCCCTCGCCGACCACGCCGCGCCGCCGCTCGACC 359
consensus_3877#1      ACGACAAAGCCTATGGCGTCCCGTGGGTGAACGGNG------------------------ 245
                       *****    *  * ** **  *   *    **  *                        

consensus_3877#0      TGGATCTGCTCCCCGTCTCCAACCTCCCTCGCCCGCTCACCATCACCGACCTCTCCCCCG 419
consensus_3877#1      ------------------------------------------------------------
                                                                                  

consensus_3877#0      CGCCCATGCACGGCAGCCAGCTGCGCGTCGCCTACCAGGGTGTCCCGGGGGCATACAGCG 479
consensus_3877#1      ------------------------------------------------------------
                                                                                  

consensus_3877#0      AGGCGGCGGCGGCGAAGGCCTACCCCTCCTGCGACGCCATCCCCTGCGACCAGTTCGAGG 539
consensus_3877#1      ------------------------------------------------------------
                                                                                  

consensus_3877#0      TGGCCTTCCAGGCCGTCGAGCTCTGGATCGCCGACCGCGCCGTCCTCCCCGTCGAGAACT 599
consensus_3877#1      ------------------------------------------------------------
                                                                                  

consensus_3877#0      CCCTCGGCGGCAGCATCCACCGCAACTACGACCTCCTCCTCCGCCACCGCCTCCACATCG 659
consensus_3877#1      ------------------------------------------------------------
                                                                                  

consensus_3877#0      TCGGCGAGGTCCAGCTCCCCGTCCACCACTGCCTCCTCGCGCTCCCGGGCGTCCGCAGGG 719
consensus_3877#1      ------------------------------------------------------------
                                                                                  

consensus_3877#0      ACCTCCTCACCCGCGTCATCTCCCACCCGCAGGCGCTCGCCCAGTGCGAGCTCACCCTCA 779
consensus_3877#1      ------------------------------------------------------------
                                                                                  

consensus_3877#0      ACGCCATGGGCCTCAACGTCGCCCGCGAGGCCTTCGACGACACCGC 825
consensus_3877#1      ----------------------------------------------