cluster # 389

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Oryza sativa
cluster # 389 cluster # 389 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_389#0 length = 427 sequences # 1

consensus_389#1 length = 375 sequences # 1

consensusID : consensus_389#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [NAATNCNGNNGCAAGAGGCCGACCACAACAAGACGGGCTTCCTCGACAGGTTCACGGAGGCGCTGTTCTACTACTCCGCGGTGTTCGACTCGCTGGACGCGGCGAGCGCCACGGCGGNCGCGGGCAACGGATGGCGGAGGCGTACCTCCAGAGGGAGATCTGCGACATCGTGTGCGGGGAGGGCGCCGCCCGNAGGAACGGCACGAGCCGCTGTCTCGGTGGCGGGACAGGCTCACGCGCGCCGGCCTNAGCGCCGTGCCGCTCGGTTCGAACGCGCTGNGCAGGCGAGGATGCTGGTCGGGCTGTTCTCCGGCGAGGGGCACAGCGTCGAGGAGGCCGACGGGTGCCTNAACCTCGGCTTGCANGGGCGGCCGCANCGCGTTGAGCTCCAGTTTTTNTTCCTTTAGTGAGGGTAATTTCGCGTTTG]

[+] EMBL OSC3241              [NAATNCNGNNGCAAGAGGCCGACCACAACAAGACGGGCTTCCTCGACAGGTTCACGGAGGCGCTGTTCTACTACTCCGCGGTGTTCGACTCGCTGGACGCGGCGAGCGCCACGGCGGNCGCGGGCAACGGATGGCGGAGGCGTACCTCCAGAGGGAGATCTGCGACATCGTGTGCGGGGAGGGCGCCGCCCGNAGGAACGGCACGAGCCGCTGTCTCGGTGGCGGGACAGGCTCACGCGCGCCGGCCTNAGCGCCGTGCCGCTCGGTTCGAACGCGCTGNGCAGGCGAGGATGCTGGTCGGGCTGTTCTCCGGCGAGGGGCACAGCGTCGAGGAGGCCGACGGGTGCCTNAACCTCGGCTTGCANGGGCGGCCGCANCGCGTTGAGCTCCAGTTTTTNTTCCTTTAGTGAGGGTAATTTCGCGTTTG]




>consensus_389#0
NAATNCNGNNGCAAGAGGCCGACCACAACAAGACGGGCTTCCTCGACAGGTTCACGGAGG
CGCTGTTCTACTACTCCGCGGTGTTCGACTCGCTGGACGCGGCGAGCGCCACGGCGGNCG
CGGGCAACGGATGGCGGAGGCGTACCTCCAGAGGGAGATCTGCGACATCGTGTGCGGGGA
GGGCGCCGCCCGNAGGAACGGCACGAGCCGCTGTCTCGGTGGCGGGACAGGCTCACGCGC
GCCGGCCTNAGCGCCGTGCCGCTCGGTTCGAACGCGCTGNGCAGGCGAGGATGCTGGTCG
GGCTGTTCTCCGGCGAGGGGCACAGCGTCGAGGAGGCCGACGGGTGCCTNAACCTCGGCT
TGCANGGGCGGCCGCANCGCGTTGAGCTCCAGTTTTTNTTCCTTTAGTGAGGGTAATTTC
GCGTTTG

consensusID : consensus_389#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 375
fasta sequence

                              [CCGCGGACGCGTGGGCGGTCATCGAGCAAGAGGCCGACCACAACAAGACGGGCTTCCTCGACAGGTTCACGGAGGCGCTGTTCTACTACTCCGCGGTGTTCGACTCGCTGGACGCGGCGAGCGCCAGCGGCGGCGCGGGCAACGCGATGGCGGAGGCGTACCTCCAGAGGGAGATCTGCGACATCGTGTGCGGGGAGGGCGCCGCCCGGAGGGAACGGCACGAGCCGCTGTCTCGGTGGCGGGACAGGCTCACGCGCGCCGGCCTGAGCGCCGTGCCGCTCGGTTCGAACGCGCTGCGGCAGGCGAGGATGCTGGTCGGGCTGTTCTCCGGCGAGGGGCACAGCGTCGAGGAGGCCGACGGGTGCCTCACCCTCG]

[+] EMBL AU094565             [CCGCGGACGCGTGGGCGGTCATCGAGCAAGAGGCCGACCACAACAAGACGGGCTTCCTCGACAGGTTCACGGAGGCGCTGTTCTACTACTCCGCGGTGTTCGACTCGCTGGACGCGGCGAGCGCCAGCGGCGGCGCGGGCAACGCGATGGCGGAGGCGTACCTCCAGAGGGAGATCTGCGACATCGTGTGCGGGGAGGGCGCCGCCCGGAGGGAACGGCACGAGCCGCTGTCTCGGTGGCGGGACAGGCTCACGCGCGCCGGCCTGAGCGCCGTGCCGCTCGGTTCGAACGCGCTGCGGCAGGCGAGGATGCTGGTCGGGCTGTTCTCCGGCGAGGGGCACAGCGTCGAGGAGGCCGACGGGTGCCTCACCCTCG]




>consensus_389#1
CCGCGGACGCGTGGGCGGTCATCGAGCAAGAGGCCGACCACAACAAGACGGGCTTCCTCG
ACAGGTTCACGGAGGCGCTGTTCTACTACTCCGCGGTGTTCGACTCGCTGGACGCGGCGA
GCGCCAGCGGCGGCGCGGGCAACGCGATGGCGGAGGCGTACCTCCAGAGGGAGATCTGCG
ACATCGTGTGCGGGGAGGGCGCCGCCCGGAGGGAACGGCACGAGCCGCTGTCTCGGTGGC
GGGACAGGCTCACGCGCGCCGGCCTGAGCGCCGTGCCGCTCGGTTCGAACGCGCTGCGGC
AGGCGAGGATGCTGGTCGGGCTGTTCTCCGGCGAGGGGCACAGCGTCGAGGAGGCCGACG
GGTGCCTCACCCTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_389#0      ---------------NAATNCNGNNGCAAGAGGCCGACCACAACAAGACGGGCTTCCTCG 45
consensus_389#1      CCGCGGACGCGTGGGCGGTCATCGAGCAAGAGGCCGACCACAACAAGACGGGCTTCCTCG 60
                                       *      ***********************************

consensus_389#0      ACAGGTTCACGGAGGCGCTGTTCTACTACTCCGCGGTGTTCGACTCGCTGGACGCGGCGA 105
consensus_389#1      ACAGGTTCACGGAGGCGCTGTTCTACTACTCCGCGGTGTTCGACTCGCTGGACGCGGCGA 120
                     ************************************************************

consensus_389#0      GCGCCACGGCGGNCGCGGGCAACG-GATGGCGGAGGCGTACCTCCAGAGGGAGATCTGCG 164
consensus_389#1      GCGCCAGCGGCGGCGCGGGCAACGCGATGGCGGAGGCGTACCTCCAGAGGGAGATCTGCG 180
                     ******  *  * *********** ***********************************

consensus_389#0      ACATCGTGTGCGGGGAGGGCGCCGCCCGNAGG-AACGGCACGAGCCGCTGTCTCGGTGGC 223
consensus_389#1      ACATCGTGTGCGGGGAGGGCGCCGCCCGGAGGGAACGGCACGAGCCGCTGTCTCGGTGGC 240
                     **************************** *** ***************************

consensus_389#0      GGGACAGGCTCACGCGCGCCGGCCTNAGCGCCGTGCCGCTCGGTTCGAACGCGCTGNG-C 282
consensus_389#1      GGGACAGGCTCACGCGCGCCGGCCTGAGCGCCGTGCCGCTCGGTTCGAACGCGCTGCGGC 300
                     ************************* ****************************** * *

consensus_389#0      AGGCGAGGATGCTGGTCGGGCTGTTCTCCGGCGAGGGGCACAGCGTCGAGGAGGCCGACG 342
consensus_389#1      AGGCGAGGATGCTGGTCGGGCTGTTCTCCGGCGAGGGGCACAGCGTCGAGGAGGCCGACG 360
                     ************************************************************

consensus_389#0      GGTGCCTNAACCTCGGCTTGCANGGGCGGCCGCANCGCGTTGAGCTCCAGTTTTTNTTCC 402
consensus_389#1      GGTGCCTCACCCTCG--------------------------------------------- 375
                     ******* * *****                                             

consensus_389#0      TTTAGTGAGGGTAATTTCGCGTTTG 427
consensus_389#1      -------------------------