cluster # 3899

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Oryza sativa
cluster # 3899 cluster # 3899 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3899#0 length = 502 sequences # 1

consensus_3899#1 length = 468 sequences # 1
consensus_3899#2 length = 327 sequences # 1

consensusID : consensus_3899#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 502
fasta sequence

                              [CGAGGCCCGCCATGCGCAGCCCCTTCGGGGAGGAGGTACGACGGCGTCAGTGCACTGCACCGTTCAGGCGTCGGTTGTCCATGGCTGTTCGAGCCGCTGGATGGCAGCCCCTGCGGGAAGGTGATCGACATCACGCGCCAACTTCTCAGCCATGCTCACCTCGGCATCTGCACGCGGTGACGCTGCAGCGCGGAAGCGGGCTGGTGCCAGCTGCTTGCTGTCAGCCAGAACAAGTCCGACCTGGAGTTCTTGTCAGGTTCTGTGGGGGAAGGGAAGCTCAGGACGGTGGTGGACTCGAGGTTCCCGCTGGGCGACGCGGGCGAAGGCGTGCAGAAGAGCATCGACGGCCACGCCACCGGCAAGATAGTCGTTGAGATGGAAGGGTGATAGTATCATGTTGGCATGTTCGGTTGTTCTTGTTTGTTCTGGTGGAAACTTACATTGGTTGGACATACAATACAGATAGGGGAATACTAGTCAGTTTGGCATCTTTTAGTTTGGA]

[+] EMBL BI801889             [CGAGGCCCGCCATGCGCAGCCCCTTCGGGGAGGAGGTACGACGGCGTCAGTGCACTGCACCGTTCAGGCGTCGGTTGTCCATGGCTGTTCGAGCCGCTGGATGGCAGCCCCTGCGGGAAGGTGATCGACATCACGCGCCAACTTCTCAGCCATGCTCACCTCGGCATCTGCACGCGGTGACGCTGCAGCGCGGAAGCGGGCTGGTGCCAGCTGCTTGCTGTCAGCCAGAACAAGTCCGACCTGGAGTTCTTGTCAGGTTCTGTGGGGGAAGGGAAGCTCAGGACGGTGGTGGACTCGAGGTTCCCGCTGGGCGACGCGGGCGAAGGCGTGCAGAAGAGCATCGACGGCCACGCCACCGGCAAGATAGTCGTTGAGATGGAAGGGTGATAGTATCATGTTGGCATGTTCGGTTGTTCTTGTTTGTTCTGGTGGAAACTTACATTGGTTGGACATACAATACAGATAGGGGAATACTAGTCAGTTTGGCATCTTTTAGTTTGGA]




>consensus_3899#0
CGAGGCCCGCCATGCGCAGCCCCTTCGGGGAGGAGGTACGACGGCGTCAGTGCACTGCAC
CGTTCAGGCGTCGGTTGTCCATGGCTGTTCGAGCCGCTGGATGGCAGCCCCTGCGGGAAG
GTGATCGACATCACGCGCCAACTTCTCAGCCATGCTCACCTCGGCATCTGCACGCGGTGA
CGCTGCAGCGCGGAAGCGGGCTGGTGCCAGCTGCTTGCTGTCAGCCAGAACAAGTCCGAC
CTGGAGTTCTTGTCAGGTTCTGTGGGGGAAGGGAAGCTCAGGACGGTGGTGGACTCGAGG
TTCCCGCTGGGCGACGCGGGCGAAGGCGTGCAGAAGAGCATCGACGGCCACGCCACCGGC
AAGATAGTCGTTGAGATGGAAGGGTGATAGTATCATGTTGGCATGTTCGGTTGTTCTTGT
TTGTTCTGGTGGAAACTTACATTGGTTGGACATACAATACAGATAGGGGAATACTAGTCA
GTTTGGCATCTTTTAGTTTGGA

consensusID : consensus_3899#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 468
fasta sequence

                              [CCATGCTCACCTCGGCGCTGCACGCGGTGACGCTGCGGCGGAAGCGGCTGGTGCCGCTGCTGCTGTCGCCGAACAAGGCCGACCTGGAGTTCATTGGTCGGGCTGGTGGGGGAAGGGAAGCTCAGGACGGTGGTGGACTCGAGGTTCCCGCTGGGCGACGCGGCGAAGGCGTGGCAGAAGAGCATCGACGGCCACGCCACCGGCAAGATAGTCGTTGAGATGGAAGGGTGATAGTATCATGTTGGCATGTTCGGTTGTTCTTGTTTGTTCGTGGGTGGAAACNTACATTCGGTTGGAACATAACAATACAGAATAGGGAATACTAGTCAGTTTGGCATCTGTTTAGTTTGATGATATGACTTGGTGATGATATATACTCGAGATTTGTTTCTCTCTTCTGCGTTTTGAAGAATTTAGGAGCTGTAAATCTGAGGGCATTATATATCGAGATTACTTCTGCTTCAAAAA]

[+] EMBL BQ908923             [CCATGCTCACCTCGGCGCTGCACGCGGTGACGCTGCGGCGGAAGCGGCTGGTGCCGCTGCTGCTGTCGCCGAACAAGGCCGACCTGGAGTTCATTGGTCGGGCTGGTGGGGGAAGGGAAGCTCAGGACGGTGGTGGACTCGAGGTTCCCGCTGGGCGACGCGGCGAAGGCGTGGCAGAAGAGCATCGACGGCCACGCCACCGGCAAGATAGTCGTTGAGATGGAAGGGTGATAGTATCATGTTGGCATGTTCGGTTGTTCTTGTTTGTTCGTGGGTGGAAACNTACATTCGGTTGGAACATAACAATACAGAATAGGGAATACTAGTCAGTTTGGCATCTGTTTAGTTTGATGATATGACTTGGTGATGATATATACTCGAGATTTGTTTCTCTCTTCTGCGTTTTGAAGAATTTAGGAGCTGTAAATCTGAGGGCATTATATATCGAGATTACTTCTGCTTCAAAAA]




>consensus_3899#1
CCATGCTCACCTCGGCGCTGCACGCGGTGACGCTGCGGCGGAAGCGGCTGGTGCCGCTGC
TGCTGTCGCCGAACAAGGCCGACCTGGAGTTCATTGGTCGGGCTGGTGGGGGAAGGGAAG
CTCAGGACGGTGGTGGACTCGAGGTTCCCGCTGGGCGACGCGGCGAAGGCGTGGCAGAAG
AGCATCGACGGCCACGCCACCGGCAAGATAGTCGTTGAGATGGAAGGGTGATAGTATCAT
GTTGGCATGTTCGGTTGTTCTTGTTTGTTCGTGGGTGGAAACNTACATTCGGTTGGAACA
TAACAATACAGAATAGGGAATACTAGTCAGTTTGGCATCTGTTTAGTTTGATGATATGAC
TTGGTGATGATATATACTCGAGATTTGTTTCTCTCTTCTGCGTTTTGAAGAATTTAGGAG
CTGTAAATCTGAGGGCATTATATATCGAGATTACTTCTGCTTCAAAAA

consensusID : consensus_3899#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 327
fasta sequence

                              [GGGGANGANGTNCGACNGCGTCNTGCACTGCACCGTCGGCNTNTGNTTTTTTNCTTTCGANCCGCNGATGGCGCCCCNCGGGAAGGTGATCGACATCACGCCCAACTTCTCAGCCATGCCTCACCTCGGCGCTGCANNCTGTGACCCTNCNGCGGAANCNGNTGGTGCCGCTCTGCTGTCCCCNAACAANGCCNACCTGGAATTCTTTGTCTGGCTGGTNGGGGAACGGAACTCACGACGGTGGTGGANTCCAAGGGGGGCCNGTACCAATTCCNCCTATAATNAATCTTATTACATTCATTGGGCCGTCGTTTACAAACCTCCTNA]

[+] EMBL AA752967             [GGGGANGANGTNCGACNGCGTCNTGCACTGCACCGTCGGCNTNTGNTTTTTTNCTTTCGANCCGCNGATGGCGCCCCNCGGGAAGGTGATCGACATCACGCCCAACTTCTCAGCCATGCCTCACCTCGGCGCTGCANNCTGTGACCCTNCNGCGGAANCNGNTGGTGCCGCTCTGCTGTCCCCNAACAANGCCNACCTGGAATTCTTTGTCTGGCTGGTNGGGGAACGGAACTCACGACGGTGGTGGANTCCAAGGGGGGCCNGTACCAATTCCNCCTATAATNAATCTTATTACATTCATTGGGCCGTCGTTTACAAACCTCCTNA]




>consensus_3899#2
GGGGANGANGTNCGACNGCGTCNTGCACTGCACCGTCGGCNTNTGNTTTTTTNCTTTCGA
NCCGCNGATGGCGCCCCNCGGGAAGGTGATCGACATCACGCCCAACTTCTCAGCCATGCC
TCACCTCGGCGCTGCANNCTGTGACCCTNCNGCGGAANCNGNTGGTGCCGCTCTGCTGTC
CCCNAACAANGCCNACCTGGAATTCTTTGTCTGGCTGGTNGGGGAACGGAACTCACGACG
GTGGTGGANTCCAAGGGGGGCCNGTACCAATTCCNCCTATAATNAATCTTATTACATTCA
TTGGGCCGTCGTTTACAAACCTCCTNA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3899#0      CGAGGCCCGCCATGCGCAGCCCCTTCGGGGAGGAGGTACGACGGCGTCAGTGCACTGCAC 60
consensus_3899#1      ------------------------------------------------------------
consensus_3899#2      ------------------------------------------------------------
                                                                                  

consensus_3899#0      CGTTCAGGCGTCGGTTGTCCATGGCTGTTCGAGCCGCTGGATGGCAGCCCCTGCGGGAAG 120
consensus_3899#1      ------------------------------------------------------------
consensus_3899#2      ------------------------------------------------------------
                                                                                  

consensus_3899#0      GTGATCGACATCACGCGCCAACTTCTCAGCCATGCTCACCTCGGCATCTGCACGCGGTGA 180
consensus_3899#1      -----------------------------CCATGCTCACCTCGGCG-CTGCACGCGGTGA 30
consensus_3899#2      ------------------------------------------------------------
                                                                                  

consensus_3899#0      CGCTGCAGCGCGGAAGCGGGCTGGTGCCAGCTGCTTGCTGTCAGCCAGAACAAGTCCGAC 240
consensus_3899#1      CGCTGCGGC--GGAAGCGG-CTGGTGCC-GCTGCT-GCTGTCGCC--GAACAAGGCCGAC 83
consensus_3899#2      -----------GGGGANGA---NGTNCG-ACNGCGTCNTG-CACT----GCACCGTCGGC 40
                                 **    *     ** *   * **    ** *        **    ** *

consensus_3899#0      CTGGAGTTC-TTGTCAGGTTCTGTGGGGGAAGGGAAGCTCAGGACGGTGGTGGACTCGAG 299
consensus_3899#1      CTGGAGTTCATTGGTCGGGCTGGTGGGGGAAGGGAAGCTCAGGACGGTGGTGGACTCGAG 143
consensus_3899#2      NTNTGNTTTTTTNCTTTCGANC-CGCNGATGGCGCCCCNCGGGAAGGTGATCGACA---- 95
                       *    **  **            *  *   * *   * * *** **** * ***     

consensus_3899#0      GTTCCCGCTGGGCGACGCGGGCGAAGGCGTG-CAGAAGAGCATCGACGGCCACGCCACCG 358
consensus_3899#1      GTTCCCGCTGGGCGACGCGG-CGAAGGCGTGGCAGAAGAGCATCGACGGCCACGCCACCG 202
consensus_3899#2      --TCACGCCCAACTTCTCAG-CCATGCCTCACCTCGGCGCTGCANNCTGTGACCCTNCNG 152
                        ** ***    *  * * * * * * *    *             * *  ** *  * *

consensus_3899#0      GCAAGATAGTCGTTGAGATGGAAGGGTGATAGTATCATGTTGGCATGTTCGGTTGTTCTT 418
consensus_3899#1      GCAAGATAGTCGTTGAGATGGAAGGGTGATAGTATCATGTTGGCATGTTCGGTTGTTCTT 262
consensus_3899#2      CGGAANCNGNTGGTGCCGCTCTGCTGTCCCCNAACAANGCCNACCTGGAATTCTTTGTCT 212
                         *    *  * **          **      *  * *    * **      * *   *

consensus_3899#0      GTTTGTTCT--GGTGGAAACTTACATT-GGTTGGA-CATA-CAATACAGATAGGGGAATA 473
consensus_3899#1      GTTTGTTCGTGGGTGGAAACNTACATTCGGTTGGAACATAACAATACAGAATAGGGAATA 322
consensus_3899#2      GGCTGGTNGGGGAACGGAACTCACGAC--GGTGGTGGANTCCAA--------GGGGGGCC 262
                      *  ** *    *   * ***  **     * ***   *   ***         ***    

consensus_3899#0      CTAGTCAGTTTGGCATCT-TTTAGTTTGGA------------------------------ 502
consensus_3899#1      CTAGTCAGTTTGGCATCTGTTTAGTTTGATGATATGACTTGGTGATGATATATACTCGAG 382
consensus_3899#2      NGTACCAATTCCNCCTATAATNAATCTTATTACATTCATTGG-GCCGTCGTTTAC---AA 318
                           ** **   * * *  * * * *                                 

consensus_3899#0      ------------------------------------------------------------
consensus_3899#1      ATTTGTTTCTCTCTTCTGCGTTTTGAAGAATTTAGGAGCTGTAAATCTGAGGGCATTATA 442
consensus_3899#2      ACCTCCTNA--------------------------------------------------- 327
                                                                                  

consensus_3899#0      --------------------------
consensus_3899#1      TATCGAGATTACTTCTGCTTCAAAAA 468
consensus_3899#2      --------------------------