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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3906#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1277 fasta sequence
[CCCTCGAGATTCGCCAAGCAGATAGATGGAGGCCACTGCGACGGCGGCGCAGGGACTACGGGACTGGTCGTCTCTCCCGTTGGACATGCTCGTGCTCGTCCTGGATCGGCTCGGGTGGTCGACCCACCCGAGCTTCGCATTGACGTGCCGGCACTGGCGCTCCGCCGTGTCGCCCTTCTACCCGGCGTGGATCACGCCTCTCCTCCTGAGCGCCGCCGACATCGGCGTCACGAACGTCAGGTACTACAGCCCCTACTACCACAGGTGTTTCGAGATCGCCGACACGCTCCTCAAGGTGCCCAAAATTGCGGCTAGGATCTGCTGCTCCAGTGGACAACACCTCACGCTGTGTCTACCTAGATTGATCCTCCAAGCCGATCTCGTAGCCGGCACCATGTATGAGCTGCCAGAGATGCCTTTCTATTCATTCGAGTTTATTGTCTACGATGAGCACGCGCGGAGGATGTATTGCGTCAACACGACGTACGCGCTACAGCTCGCCCGTGCGACCCAACAAGACGACGGCGAGTGGGGGCCCTGGGAATTAACGGACTTTGACGTGGAAGGACCGCAACTTCTGGCGGCGCCGATCAGCAACCCGGTGCTCCATGGTGGTTTGTTGTATGTTCTTGGTGAAGACGGGAAGATGGCGGTGTATGATCCATGCAACCACGACAATAATTTTACAGTTCCCGATAAACCTAAGGGCTTTGGAATCAAACACCAAGTTGATAGCCACCTGTTTGAGTCCGACCAAGGCGCGCTCATGGCTGTCCTCGTCGGCTACAGTGGTGCGCCTATCCATGTCGTCAAGCTCAACGAAGAGACGATGGAGTGGGAGAAGATGCGGTCATTGGAAGGACATGCGTTGTTCACCGGGACATACACGACAATGTTGAGGAAGACTAAGCTTAGATTGATGCAAAACAAGGTGTTCCTCCCGAGGCTGTATGACTGGCCTGAGACTATCCATGTCGACATTGTTACACGTGATGGCGAAACAGCATTTGTACCAAAGTCATCCAGTTCGTCTAACACCAAGGAGATCACCTCGGACATAAATATTTGGTTCTACGAGTTTGGGCAGCAAGACGCAAGAGAGTTTTGGGGATCGGAGAGAGTAGATTATAGTATTTGGGTTGATTTTAGTACTAATTGACACAAATTGACGTTGTTAGCTCTTATATTTTCATATAGTGAATCATCTCACAATGAAGTTACTCTTCTTTCAGGCCAAAATCAAAATCGACGCAAATGAAATTTGATATAATATTTCT]
[+] EMBL AK105564 [CCCTCGAGATTCGCCAAGCAGATAGATGGAGGCCACTGCGACGGCGGCGCAGGGACTACGGGACTGGTCGTCTCTCCCGTTGGACATGCTCGTGCTCGTCCTGGATCGGCTCGGGTGGTCGACCCACCCGAGCTTCGCATTGACGTGCCGGCACTGGCGCTCCGCCGTGTCGCCCTTCTACCCGGCGTGGATCACGCCTCTCCTCCTGAGCGCCGCCGACATCGGCGTCACGAACGTCAGGTACTACAGCCCCTACTACCACAGGTGTTTCGAGATCGCCGACACGCTCCTCAAGGTGCCCAAAATTGCGGCTAGGATCTGCTGCTCCAGTGGACAACACCTCACGCTGTGTCTACCTAGATTGATCCTCCAAGCCGATCTCGTAGCCGGCACCATGTATGAGCTGCCAGAGATGCCTTTCTATTCATTCGAGTTTATTGTCTACGATGAGCACGCGCGGAGGATGTATTGCGTCAACACGACGTACGCGCTACAGCTCGCCCGTGCGACCCAACAAGACGACGGCGAGTGGGGGCCCTGGGAATTAACGGACTTTGACGTGGAAGGACCGCAACTTCTGGCGGCGCCGATCAGCAACCCGGTGCTCCATGGTGGTTTGTTGTATGTTCTTGGTGAAGACGGGAAGATGGCGGTGTATGATCCATGCAACCACGACAATAATTTTACAGTTCCCGATAAACCTAAGGGCTTTGGAATCAAACACCAAGTTGATAGCCACCTGTTTGAGTCCGACCAAGGCGCGCTCATGGCTGTCCTCGTCGGCTACAGTGGTGCGCCTATCCATGTCGTCAAGCTCAACGAAGAGACGATGGAGTGGGAGAAGATGCGGTCATTGGAAGGACATGCGTTGTTCACCGGGACATACACGACAATGTTGAGGAAGACTAAGCTTAGATTGATGCAAAACAAGGTGTTCCTCCCGAGGCTGTATGACTGGCCTGAGACTATCCATGTCGACATTGTTACACGTGATGGCGAAACAGCATTTGTACCAAAGTCATCCAGTTCGTCTAACACCAAGGAGATCACCTCGGACATAAATATTTGGTTCTACGAGTTTGGGCAGCAAGACGCAAGAGAGTTTTGGGGATCGGAGAGAGTAGATTATAGTATTTGGGTTGATTTTAGTACTAATTGACACAAATTGACGTTGTTAGCTCTTATATTTTCATATAGTGAATCATCTCACAATGAAGTTACTCTTCTTTCAGGCCAAAATCAAAATCGACGCAAATGAAATTTGATATAATATTTCT]
consensusID : consensus_3906#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1272 fasta sequence
[ATCCTGCACGCCGTAAAGTGCGCTGGTGTTGAACGATCGATCGAGAAAGCAAAAGATGGAGGCGGATGCGACGACGGCGGCGCAGGGACGACGACGGGACGATCGCTGGTCGTCCCTCCCGTTCGACATGCTCGTGCTCGTCGTCGACCGGCTCGGCTGGTCCAACCACCCGAGCTTCGCCCTGACGTGCCGCCACTGGCGCTCCGCCGTGTCGCCGTTCTACCCGGCGTGGATCACCCCGCTCCTCCTCAGCTCCGCCGACGTCGGCGTCGCCAACGCCAGCTACTACAGCCCGTACTTCCACAGGAGCTTCGAGGTCGACGGCTGCACGCTCAACGTGCCGCCCGAAGCCAATCTCTGCTGCTCCAACGGACGACGCCTCACGCTGTGCCTGCCTAAGCTGGTCCTGCAAACCGATCTCGTCACCGGCGCCGTCGACGAGCTACCGGAGATGCCGTTCTACTGGTTCAACTTCATCGTCTACGACGACGCCGACCGGAGGATGTACTGC--CAACACGATCTTCGTGGTGCGGCTCGCCCGCGCGATTCAAGACGAGGACGGCGAGTGGGGGCCATGGGACCTGACGGAGTTCAACGTCGAGGAAGGAGCACAGCTTCAGGCCTCGCCGATCAGCAACCCGGTGCTCCATGGTGGCCTGCTGTACGTTCTTGGTGAAGAC-GGGAAG-CTGGC-GGTGTATGATCCGTGCAACCACGATGATAATTTCAAGGTTGTTGATAAGCTTAAGGGATTTGGGATTGAGCATGATCGCGTTGACAGCTACCTGTTCGAGTCTGATCAAGGTGAGCTCATGGCTGTCCTCGTCGGCTACACTGGTACGCCTGTCCATGTCCTCAAACTCAATGAGGAGACAATGGAGTGGGAGAAGATGGAATCCTTGGATGGACGGGCATTGTTCACCGGAACATACACGACAATGATGAGAAAAACCAAGCTTAAGTCGATGCAGAACAAGGTTTTCCTCCCGAGGTTGTATGAGTGGCCTAAGACCATTCATGTTGACCTTGTTATTCGTGATGGCGAACCAGCATTTATACCAAAGTCACACTCGCAATATAGCATCGAGAAGATCACCTCTAATACGAGTATTTGGTCCTATAAAGTTGGGCAGCAGGAAGAAGCAAGAAAGTTTTGGGGATCGGAGAAGGTAGACTATAGTATATGGGTCGATTTTAGTACTAATTTACAATAATTATAGGATAATTAATTATATGTACGGAAGATTATAGTAAGAGACAGTAAAGAGAAGATAC]
[+] EMBL AK119428 [ATCCTGCACGCCGTAAAGTGCGCTGGTGTTGAACGATCGATCGAGAAAGCAAAAGATGGAGGCGGATGCGACGACGGCGGCGCAGGGACGACGACGGGACGATCGCTGGTCGTCCCTCCCGTTCGACATGCTCGTGCTCGTCGTCGACCGGCTCGGCTGGTCCAACCACCCGAGCTTCGCCCTGACGTGCCGCCACTGGCGCTCCGCCGTGTCGCCGTTCTACCCGGCGTGGATCACCCCGCTCCTCCTCAGCTCCGCCGACGTCGGCGTCGCCAACGCCAGCTACTACAGCCCGTACTTCCACAGGAGCTTCGAGGTCGACGGCTGCACGCTCAACGTGCCGCCCGAAGCCAATCTCTGCTGCTCCAACGGACGACGCCTCACGCTGTGCCTGCCTAAGCTGGTCCTGCAAACCGATCTCGTCACCGGCGCCGTCGACGAGCTACCGGAGATGCCGTTCTACTGGTTCAACTTCATCGTCTACGACGACGCCGACCGGAGGATGTACTGC CAACACGATCTTCGTGGTGCGGCTCGCCCGCGCGATTCAAGACGAGGACGGCGAGTGGGGGCCATGGGACCTGACGGAGTTCAACGTCGAGGAAGGAGCACAGCTTCAGGCCTCGCCGATCAGCAACCCGGTGCTCCATGGTGGCCTGCTGTACGTTCTTGGTGAAGAC GGGAAG CTGGC GGTGTATGATCCGTGCAACCACGATGATAATTTCAAGGTTGTTGATAAGCTTAAGGGATTTGGGATTGAGCATGATCGCGTTGACAGCTACCTGTTCGAGTCTGATCAAGGTGAGCTCATGGCTGTCCTCGTCGGCTACACTGGTACGCCTGTCCATGTCCTCAAACTCAATGAGGAGACAATGGAGTGGGAGAAGATGGAATCCTTGGATGGACGGGCATTGTTCACCGGAACATACACGACAATGATGAGAAAAACCAAGCTTAAGTCGATGCAGAACAAGGTTTTCCTCCCGAGGTTGTATGAGTGGCCTAAGACCATTCATGTTGACCTTGTTATTCGTGATGGCGAACCAGCATTTATACCAAAGTCACACTCGCAATATAGCATCGAGAAGATCACCTCTAATACGAGTATTTGGTCCTATAAAGTTGGGCAGCAGGAAGAAGCAAGAAAGTTTTGGGGATCGGAGAAGGTAGACTATAGTATATGGGTCGATTTTAGTACTAATTTACAATAATTATAGGATAATTAATTATATGTACGGAAGATTATAGTAAGAGACAGTAAAGAGAAGATAC]
[-] EMBL CB633300 [ GTGTTGAACGATCGATCGAGAAAGCAAAAGATGGAGGCGGATGCGACGACGGCGGCGCAGGGACGACGACGGGACGATCGCTGGTCGTCCCTCCCGTTCGACATGCTCGTGCTCGTCGTCGACCGGCTCGGCTGGTCCAACCACCCGAGCTTCGCCCTGACGTGCCGCCACTGGCGCTCCGCCGTGTCGCCGTTCTACCCGGCGTGGATCACCCCGCTCCTCCTCAGCTCCGCCGACGTCGGCGTCGCCAACGCCCGCTACTACAGCCCGTACTTCCACAGGAGCTTCGAGGTCGACGGCTGCACGCTCAACGTGCCGCCCGAAGCCAATCTCTGCTGCTCCAACGGACGACGCCTCACGCTGTGCCTGCCTAAGCTGGTCCTGCAAACCGATCTCGTCACCGGCGCCGTCGACGAGCTACCGGAGATGCCGTTCTACTGGTTCAACTTCATTGTCTATGACGACGCCGACCGGAGGATGTACTGCGTCAACACGATCTTCGTGGTGCGGCTCGCCCGCGCGATTCAAGACGAGGACGGCGAGTGGGGGCCATGGGACCTGACGGAGTTCAACGTCGAGGAAGGAGCACAGCTTCAGGCCTCGCCGATCAGCAACCCGGTGCTCCATGGTGGCCTGCTGTACGTTCTTGGTGAAGACTGGGAAGACTGGCATGTGTATGATCCGTGCAACCACGATGATAATTTCAAGGTTGTTGATAAGCTTAAGGGATTTGGGATTGAGCATGATCGCGTTGACAGCTACCTGTTCGAGTCTGATCAAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3906#0 -----------------------------CCCTCGA--GATTCGCCAAGCAGATAGATGG 29
consensus_3906#1 ATCCTGCACGCCGTAAAGTGCGCTGGTGTTGAACGATCGATCGAGAAAGCAAA-AGATGG 59
*** *** ***** * ******
consensus_3906#0 AGGCCACTGCGACG---GCGGCGCAGGGACTACG---GGAC------TGGTCGTCTCTCC 77
consensus_3906#1 AGGCGGATGCGACGACGGCGGCGCAGGGACGACGACGGGACGATCGCTGGTCGTCCCTCC 119
**** ******* ************* *** **** ******** ****
consensus_3906#0 CGTTGGACATGCTCGTGCTCGTCCTGGATCGGCTCGGGTGGTCGACCCACCCGAGCTTCG 137
consensus_3906#1 CGTTCGACATGCTCGTGCTCGTCGTCGACCGGCTCGGCTGGTCCAACCACCCGAGCTTCG 179
**** ****************** * ** ******** ***** * **************
consensus_3906#0 CATTGACGTGCCGGCACTGGCGCTCCGCCGTGTCGCCCTTCTACCCGGCGTGGATCACGC 197
consensus_3906#1 CCCTGACGTGCCGCCACTGGCGCTCCGCCGTGTCGCCGTTCTACCCGGCGTGGATCACCC 239
* ********** *********************** ******************** *
consensus_3906#0 CTCTCCTCCTGAGCGCCGCCGACATCGGCGTCACGAACGTCAGGTACTACAGCCCCTACT 257
consensus_3906#1 CGCTCCTCCTCAGCTCCGCCGACGTCGGCGTCGCCAACGCCAGCTACTACAGCCCGTACT 299
* ******** *** ******** ******** * **** *** *********** ****
consensus_3906#0 ACCACAGGTGTTTCGAGATCGCCGACACGCTCCTCAAGGTGCCCAAAATTGCGGCTAGGA 317
consensus_3906#1 TCCACAGGAGCTTCGAGGTCGACGGCTGCACGCTCAACGTGCC---GCCCGAAGCCAATC 356
******* * ****** *** ** * ***** ***** * ** *
consensus_3906#0 TCTGCTGCTCCAGTGGACAACACCTCACGCTGTGTCTACCTAGATTGATCCTCCAAGCCG 377
consensus_3906#1 TCTGCTGCTCCAACGGACGACGCCTCACGCTGTGCCTGCCTAAGCTGGTCCTGCAAACCG 416
************ **** ** ************ ** **** ** **** *** ***
consensus_3906#0 ATCTCGTAGCCGGCACCATGTATGAGCTGCCAGAGATGCCTTTCTATTCATTCGAGTTTA 437
consensus_3906#1 ATCTCGTCACCGGCGCCGTCGACGAGCTACCGGAGATGCCGTTCTACTGGTTCAACTTCA 476
******* ***** ** * * ***** ** ******** ***** * *** * ** *
consensus_3906#0 TTGTCTACGATGAGCACGCGCGGAGGATGTATTGCGTCAACACGACGTACGCGCTACAGC 497
consensus_3906#1 TCGTCTACGACGACGCCGACCGGAGGATGTACTGC--CAACACGATCTTCGTGGTGCGGC 534
* ******** ** ** *********** *** ******** * ** * * * **
consensus_3906#0 TCGCCCGTGCGACCCAACAAGACGACGGCGAGTGGGGGCCCTGGGAATTAACGGACTTTG 557
consensus_3906#1 TCGCCCGCGCGATTCAAGACGAGGACGGCGAGTGGGGGCCATGGGACCTGACGGAGTTCA 594
******* **** *** * ** ***************** ***** * ***** **
consensus_3906#0 ACGT---GGAAGGACCGCAACTTCTGGCGGCGCCGATCAGCAACCCGGTGCTCCATGGTG 614
consensus_3906#1 ACGTCGAGGAAGGAGCACAGCTTCAGGCCTCGCCGATCAGCAACCCGGTGCTCCATGGTG 654
**** ******* * ** **** *** ******************************
consensus_3906#0 GTTTGTTGTATGTTCTTGGTGAAGACGGGAAGATGGCGGTGTATGATCCATGCAACCACG 674
consensus_3906#1 GCCTGCTGTACGTTCTTGGTGAAGACGGGAAGCTGGCGGTGTATGATCCGTGCAACCACG 714
* ** **** ********************* **************** **********
consensus_3906#0 ACAATAATTTTACAGTTCCCGATAAACCTAAGGGCTTTGGAATCAAACAC---CAAGTTG 731
consensus_3906#1 ATGATAATTTCAAGGTTGTTGATAAGCTTAAGGGATTTGGGATTGAGCATGATCGCGTTG 774
* ******* * *** ***** * ****** ***** ** * ** * ****
consensus_3906#0 ATAGCCACCTGTTTGAGTCCGACCAAGGCGCGCTCATGGCTGTCCTCGTCGGCTACAGTG 791
consensus_3906#1 ACAGCTACCTGTTCGAGTCTGATCAAGGTGAGCTCATGGCTGTCCTCGTCGGCTACACTG 834
* *** ******* ***** ** ***** * ************************** **
consensus_3906#0 GTGCGCCTATCCATGTCGTCAAGCTCAACGAAGAGACGATGGAGTGGGAGAAGATGCGGT 851
consensus_3906#1 GTACGCCTGTCCATGTCCTCAAACTCAATGAGGAGACAATGGAGTGGGAGAAGATGGAAT 894
** ***** ******** **** ***** ** ***** ****************** *
consensus_3906#0 CATTGGAAGGACATGCGTTGTTCACCGGGACATACACGACAATGTTGAGGAAGACTAAGC 911
consensus_3906#1 CCTTGGATGGACGGGCATTGTTCACCGGAACATACACGACAATGATGAGAAAAACCAAGC 954
* ***** **** ** *********** *************** **** ** ** ****
consensus_3906#0 TTAGATTGATGCAAAACAAGGTGTTCCTCCCGAGGCTGTATGACTGGCCTGAGACTATCC 971
consensus_3906#1 TTAAGTCGATGCAGAACAAGGTTTTCCTCCCGAGGTTGTATGAGTGGCCTAAGACCATTC 1014
*** * ****** ******** ************ ******* ****** **** ** *
consensus_3906#0 ATGTCGACATTGTTACACGTGATGGCGAAACAGCATTTGTACCAAAGTCATCCAGTTCGT 1031
consensus_3906#1 ATGTTGACCTTGTTATTCGTGATGGCGAACCAGCATTTATACCAAAGTCACACTCGCAAT 1074
**** *** ****** ************ ******** *********** * *
consensus_3906#0 CTAACACCAAGGAGATCACCTCGGACATAAATATTTGGTTCTACGAGTTTGGGCAGCA-- 1089
consensus_3906#1 ATAGCATCGAGAAGATCACCTCTAATACGAGTATTTGGTCCTATAAAGTTGGGCAGCAGG 1134
** ** * ** ********** * * * ******** *** * **********
consensus_3906#0 -AGACGCAAGAGAGTTTTGGGGATCGGAGAGAGTAGATTATAGTATTTGGGTTGATTTTA 1148
consensus_3906#1 AAGAAGCAAGAAAGTTTTGGGGATCGGAGAAGGTAGACTATAGTATATGGGTCGATTTTA 1194
*** ****** ****************** ***** ******** ***** *******
consensus_3906#0 GTACTAATTGACACAAATTG-ACGTTGTTAGCTCTTATATTTTCA----TATAGTGAATC 1203
consensus_3906#1 GTACTAATTTACAATAATTATAGGATAATTAATTATATGTACGGAAGATTATAGTAAGAG 1254
********* *** **** * * * * * *** * * ****** *
consensus_3906#0 ATCTCACAATGAAGTTACTCTTCTTTCAGGCCAAAATCAAAATCGACGCAAATGAAATTT 1263
consensus_3906#1 ACAGTAAAGAGAAGATAC------------------------------------------ 1272
* * * **** ***
consensus_3906#0 GATATAATATTTCT 1277
consensus_3906#1 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||