cluster # 3909

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Oryza sativa
cluster # 3909 cluster # 3909 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3909#0 length = 388 sequences # 1

consensus_3909#1 length = 292 sequences # 1
consensus_3909#2 length = 279 sequences # 1

consensusID : consensus_3909#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence

                              [TTTTTTTAACTTGAGACGATCGGACTCCTAATTGCAGCTCATGATTTTTTTAAAAAAATATATATCCAAGCGAACTCCCACAGTAAATTTCATCTTAACCCTCCATGAGCTCCATGGCCTGCCGGGAAGCACCGCGTCCTGTTACTGAGTGGCTCCCCCATGGCGAGGCATCGGACACAGACGGCGACGTGCTGGCGGACGGGGATGGCAGCTCGGAGGGCGGCGTCCTCCTTGGCGATGGCGGCGGTGAGCTTGGTGTAGAGGTAGTCGACGTTGGGGCGGGACATGCGGAAGGTCGCGGCGCCAGGAGAGGGCGATCGAGACATGGAGAATCCACTCGTCTCCCTCCTCACCTCCACCCATGGCGGTCATGGCGACCCCGCAACAG]

[+] EMBL CF320868             [TTTTTTTAACTTGAGACGATCGGACTCCTAATTGCAGCTCATGATTTTTTTAAAAAAATATATATCCAAGCGAACTCCCACAGTAAATTTCATCTTAACCCTCCATGAGCTCCATGGCCTGCCGGGAAGCACCGCGTCCTGTTACTGAGTGGCTCCCCCATGGCGAGGCATCGGACACAGACGGCGACGTGCTGGCGGACGGGGATGGCAGCTCGGAGGGCGGCGTCCTCCTTGGCGATGGCGGCGGTGAGCTTGGTGTAGAGGTAGTCGACGTTGGGGCGGGACATGCGGAAGGTCGCGGCGCCAGGAGAGGGCGATCGAGACATGGAGAATCCACTCGTCTCCCTCCTCACCTCCACCCATGGCGGTCATGGCGACCCCGCAACAG]




>consensus_3909#0
TTTTTTTAACTTGAGACGATCGGACTCCTAATTGCAGCTCATGATTTTTTTAAAAAAATA
TATATCCAAGCGAACTCCCACAGTAAATTTCATCTTAACCCTCCATGAGCTCCATGGCCT
GCCGGGAAGCACCGCGTCCTGTTACTGAGTGGCTCCCCCATGGCGAGGCATCGGACACAG
ACGGCGACGTGCTGGCGGACGGGGATGGCAGCTCGGAGGGCGGCGTCCTCCTTGGCGATG
GCGGCGGTGAGCTTGGTGTAGAGGTAGTCGACGTTGGGGCGGGACATGCGGAAGGTCGCG
GCGCCAGGAGAGGGCGATCGAGACATGGAGAATCCACTCGTCTCCCTCCTCACCTCCACC
CATGGCGGTCATGGCGACCCCGCAACAG

consensusID : consensus_3909#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 292
fasta sequence

                              [TAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTGGACTCCTAATTGCAGCTCATGATTTTTTTAAAAAAATATATATCCAAGCGAACTCCCACAGTAAATTTCATCTTAACCCTCCATGAGCTCCATGGCCTGCCGGGAAGCACCGCGTCCTGTTACTGAGTGGCTCCCCCATGGCGAGGCATCGGACACAGACGGCGACGTGCTGGCGGACGGGGATGGCAGCTCGGAGGGCGGCGTCCTCCTTGGCGATGGCGGCGGTGAGCTTGGTGTAAAGGTAGTCGACGTTGGG]

[+] EMBL CF320621             [TAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTGGACTCCTAATTGCAGCTCATGATTTTTTTAAAAAAATATATATCCAAGCGAACTCCCACAGTAAATTTCATCTTAACCCTCCATGAGCTCCATGGCCTGCCGGGAAGCACCGCGTCCTGTTACTGAGTGGCTCCCCCATGGCGAGGCATCGGACACAGACGGCGACGTGCTGGCGGACGGGGATGGCAGCTCGGAGGGCGGCGTCCTCCTTGGCGATGGCGGCGGTGAGCTTGGTGTAAAGGTAGTCGACGTTGGG]




>consensus_3909#1
TAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTGGACTCCTAATTGCAGCTCATGATT
TTTTTAAAAAAATATATATCCAAGCGAACTCCCACAGTAAATTTCATCTTAACCCTCCAT
GAGCTCCATGGCCTGCCGGGAAGCACCGCGTCCTGTTACTGAGTGGCTCCCCCATGGCGA
GGCATCGGACACAGACGGCGACGTGCTGGCGGACGGGGATGGCAGCTCGGAGGGCGGCGT
CCTCCTTGGCGATGGCGGCGGTGAGCTTGGTGTAAAGGTAGTCGACGTTGGG

consensusID : consensus_3909#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [TTTTTTTTTTTTTTTCTTTTTTTTTTTGGAAAACATATCCCTATTTGAAACCGGTTGGTCACTTTTGGGCATACATAAGGGATCATATAAAAAATTTGTTTAAAAAAACTCCCATATTAACTTGAAACCATCGGACTCCTAATTGCAGCTCATGATTTTTTTAAAAAAATATATATTCCAACGAACTCCCACAGTAAATTTCATTTTAACCCTTCATGAACTCCATGGCCTGCCGGGAAACACCCCGTCCTGTTACTGAATGGGTCCCCCATGGGGAGG]

[+] EMBL CF311472             [TTTTTTTTTTTTTTTCTTTTTTTTTTTGGAAAACATATCCCTATTTGAAACCGGTTGGTCACTTTTGGGCATACATAAGGGATCATATAAAAAATTTGTTTAAAAAAACTCCCATATTAACTTGAAACCATCGGACTCCTAATTGCAGCTCATGATTTTTTTAAAAAAATATATATTCCAACGAACTCCCACAGTAAATTTCATTTTAACCCTTCATGAACTCCATGGCCTGCCGGGAAACACCCCGTCCTGTTACTGAATGGGTCCCCCATGGGGAGG]




>consensus_3909#2
TTTTTTTTTTTTTTTCTTTTTTTTTTTGGAAAACATATCCCTATTTGAAACCGGTTGGTC
ACTTTTGGGCATACATAAGGGATCATATAAAAAATTTGTTTAAAAAAACTCCCATATTAA
CTTGAAACCATCGGACTCCTAATTGCAGCTCATGATTTTTTTAAAAAAATATATATTCCA
ACGAACTCCCACAGTAAATTTCATTTTAACCCTTCATGAACTCCATGGCCTGCCGGGAAA
CACCCCGTCCTGTTACTGAATGGGTCCCCCATGGGGAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3909#0      ------------------------------------------------------------
consensus_3909#1      ------------------------------------------------------------
consensus_3909#2      TTTTTTTTTTTTTTTCTTTTTTTTTTTGGAAAACATATCCCTATTTGAAACCGGTTGGTC 60
                                                                                  

consensus_3909#0      ---------------------------------------------------TTTTTTTAA 9
consensus_3909#1      -------------------------------------TAACGGCATGACAGTGTTTTTTT 23
consensus_3909#2      ACTTTTGGGCATACATAAGGGATCATATAAAAAATTTGTTTAAAAAAACTCCCATATTAA 120
                                                                            * **  

consensus_3909#0      CTTGAGACGATCGGACTCCTAATTGCAGCTCATGATTTTTTTAAAAAAATATATATCCAA 69
consensus_3909#1      TTTTTTTTTTTTGGACTCCTAATTGCAGCTCATGATTTTTTTAAAAAAATATATATCCAA 83
consensus_3909#2      CTTGAAACCATCGGACTCCTAATTGCAGCTCATGATTTTTTTAAAAAAATATATATTCCA 180
                       **       * ******************************************** * *

consensus_3909#0      GCGAACTCCCACAGTAAATTTCATCTTAACCCTCCATGAGCTCCATGGCCTGCCGGGAAG 129
consensus_3909#1      GCGAACTCCCACAGTAAATTTCATCTTAACCCTCCATGAGCTCCATGGCCTGCCGGGAAG 143
consensus_3909#2      ACGAACTCCCACAGTAAATTTCATTTTAACCCTTCATGAACTCCATGGCCTGCCGGGAAA 240
                       *********************** ******** ***** ******************* 

consensus_3909#0      CACCGCGTCCTGTTACTGAGTGGCTCCCCCATGGCGAGGCATCGGACACAGACGGCGACG 189
consensus_3909#1      CACCGCGTCCTGTTACTGAGTGGCTCCCCCATGGCGAGGCATCGGACACAGACGGCGACG 203
consensus_3909#2      CACCCCGTCCTGTTACTGAATGGGTCCCCCATGGGGAGG--------------------- 279
                      **** ************** *** ********** ****                     

consensus_3909#0      TGCTGGCGGACGGGGATGGCAGCTCGGAGGGCGGCGTCCTCCTTGGCGATGGCGGCGGTG 249
consensus_3909#1      TGCTGGCGGACGGGGATGGCAGCTCGGAGGGCGGCGTCCTCCTTGGCGATGGCGGCGGTG 263
consensus_3909#2      ------------------------------------------------------------
                                                                                  

consensus_3909#0      AGCTTGGTGTAGAGGTAGTCGACGTTGGGGCGGGACATGCGGAAGGTCGCGGCGCCAGGA 309
consensus_3909#1      AGCTTGGTGTAAAGGTAGTCGACGTTGGG------------------------------- 292
consensus_3909#2      ------------------------------------------------------------
                                                                                  

consensus_3909#0      GAGGGCGATCGAGACATGGAGAATCCACTCGTCTCCCTCCTCACCTCCACCCATGGCGGT 369
consensus_3909#1      ------------------------------------------------------------
consensus_3909#2      ------------------------------------------------------------
                                                                                  

consensus_3909#0      CATGGCGACCCCGCAACAG 388
consensus_3909#1      -------------------
consensus_3909#2      -------------------