These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3919#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2151 fasta sequence [CAGTACACACAGTGCGTTTCCATTTTGTTCTTTCTTCCAACACTTTGGGAGAGAGCTATACCACGTTGCTCTCTCTTGCTTTGCTTGATTTGCGTATCATAATCTTTTTATAATTCGTGCTGTTTAAAATTTTAATTAGGAGGTGAATTAAAAGCCGTCCTCGTACGTACATAAATTAGCTGGCGAATCTGGCCAGTCTTTAATTCTGCCATATATGTGCATGTGTGTGTACATGTATGGAAGGATAGTATTCTCTCCTTAATTTCTTGAATTGCTATCCGATCCTGAGCAATATATGTCCCTAGCTAGCTAGCTGGGCGTCCGCCATAATTTGCTGCCAATAATAATTAGCCCCATATATCCTTGTAGCTAGGTGAATCATCCCCTTGATATGCCTTGTTAAATATGTAGCTCCGATTTAAGCTCTCTTGCCCA-TTTTTTTTCAGAGTTTATAGTTTCATTTTGATTCTTCCGCTCTCTGCTAGCTTCCACACACCAAGTTCATCAGCCAATTTCTTCCTGACGAGAAGGCCGTGTAAGAATTTTAGTGAAGTGAGTGTCTTTTTTGTTTTTCGATTGGTCGATCGAGTGCTGGTACAAGCTAGAGGATGGCGATGATGGAGAGGATTGAGGTCACCAAGCTTCATCATCATCTTCTTCTTCTTGTTCTTCTTCTCGTCGTCGCCGCCGCCGGCGGCGGCAGCGTACAGGCGGCGGAGGAGGATGAGATGAGCGGCCGGAGGAGGAGAAGCAGGCGGCGGCGTGCGGCGGACGTGATGGTGCCCATCACCATCCTCAACTCCGCCGTCGACAAGGGAGCCGTGTGCATGGACGGGACGCCGCCGGCGTACCACCTGGACCCGGGCTCCGGCGGCGGCAACCGGAGCTGGGTGGTCAACCTGGAGGGCGGCGGGTGGTGCAACAACGCCCGCACGCGCCGCTTCCGCACCGCCAGCCGCCACGGCTCCTCCGACCACATGGAGCGCCGCATCGCCTTCACCGGCATCATGAGCTCCGCCGCCGCCGACAACCCCGATTTCCACAGCTGGAACCGCGTCAAGATCCGCTACTGCGACAGCGGGTCCTTCGCCGGCGACGCCTTCAACGAGGGATTGAAGCTGCAATTCCGGGGGCAGCGCATCTGGGGGGCGGTGATCCAGCACCTGCTCGACGTCGGCATGGCCTCCGCCGAGCATGTGCTGCTCACCGGCTGCTCCGCCGGCGGCCTCGCCGCGATCCTCCACTGCGACCAGCTCCGCGCCCTCCTCCCCGCCGCCGCCACCGTCAAGTGCCTCTCCGACGGCGGCCTCTTCCTCGACGCCGTGGACGTCGCCGGCGGCAGGAGCCTGAGGTCATACTACGGCGACGTCGTCGGCCTGCAGGCGGTGGCGCCCAACCTTCCCGAGACCTGCACCGACCATCTCGACGCCACCTCGTGCTTCTTCCCTCAGAACATAATCGACGGCATAAAGACACCCATCTTCCTGCTGAATGCGGCGTACGACGTCTGGCAGATCGAGCAGAGCCTGGCCCCTAACGCAGCTGACACCAGCGGCACCTGGCGAGTCTGCAAGTTCAACCGCGCAGCCTGCAACGCGTCTCAGCTGCAGTTCCTGCAAGGTTTCAGAGATCAGATGGTGGCAGCGGTGAGAGTCTTCTCCGAGTCGAGGAGCAACGGGCTGTTCATCAACTCGTGCTTCGCTCACTGCCAGTCCGAGCTGACGGCCACCTGGAATGGTGGCTCTCCTGCTCTCCAGAACAAGGGAATTGCAAAGTCTGTTGGTGACTGGTACTTTGGTCGAGCTGAGGTGAAGGCCATCGATTGCCCCTACCCCTGTGACAAAACATGCCACAACATCATATGACATCATGCACTGACGTTTACTCGCCTCGACCGAATGGAGTGACACACATTTTTGCCTCGAAGTCCTCTCAAGTTCTTCACTCTAGCTAGTAGCTATATACATGTAGAACTATCGAGTTCAGAGCCAAAACATACAAAACAGAGAACCTCACACAAACAGATACAAAGGAAGCAAAACAAAGTTAACAAAAGCAAATAGGAAGGGGGAGAGGGGCAGGGCACATTAATATCGGGAAGCAGTGTGGTGGAGTCATGGGTGTATAATTTCACCTATTAAGAATAAATTA] [+] EMBL AK107088 [CAGTACACACAGTGCGTTTCCATTTTGTTCTTTCTTCCAACACTTTGGGAGAGAGCTATACCACGTTGCTCTCTCTTGCTTTGCTTGATTTGCGTATCATAATCTTTTTATAATTCGTGCTGTTTAAAATTTTAATTAGGAGGTGAATTAAAAGCCGTCCTCGTACGTACATAAATTAGCTGGCGAATCTGGCCAGTCTTTAATTCTGCCATATATGTGCATGTGTGTGTACATGTATGGAAGGATAGTATTCTCTCCTTAATTTCTTGAATTGCTATCCGATCCTGAGCAATATATGTCCCTAGCTAGCTAGCTGGGCGTCCGCCATAATTTGCTGCCAATAATAATTAGCCCCATATATCCTTGTAGCTAGGTGAATCATCCCCTTGATATGCCTTGTTAAATATGTAGCTCCGATTTAAGCTCTCTTGCCCA TTTTTTTTCAGAGTTTATAGTTTCATTTTGATTCTTCCGCTCTCTGCTAGCTTCCACACACCAAGTTCATCAGCCAATTTCTTCCTGACGAGAAGGCCGTGTAAGAATTTTAGTGAAGTGAGTGTCTTTTTTGTTTTTCGATTGGTCGATCGAGTGCTGGTACAAGCTAGAGGATGGCGATGATGGAGAGGATTGAGGTCACCAAGCTTCATCATCATCTTCTTCTTCTTGTTCTTCTTCTCGTCGTCGCCGCCGCCGGCGGCGGCAGCGTACAGGCGGCGGAGGAGGATGAGATGAGCGGCCGGAGGAGGAGAAGCAGGCGGCGGCGTGCGGCGGACGTGATGGTGCCCATCACCATCCTCAACTCCGCCGTCGACAAGGGAGCCGTGTGCATGGACGGGACGCCGCCGGCGTACCACCTGGACCCGGGCTCCGGCGGCGGCAACCGGAGCTGGGTGGTCAACCTGGAGGGCGGCGGGTGGTGCAACAACGCCCGCACGCGCCGCTTCCGCACCGCCAGCCGCCACGGCTCCTCCGACCACATGGAGCGCCGCATCGCCTTCACCGGCATCATGAGCTCCGCCGCCGCCGACAACCCCGATTTCCACAGCTGGAACCGCGTCAAGATCCGCTACTGCGACAGCGGGTCCTTCGCCGGCGACGCCTTCAACGAGGGATTGAAGCTGCAATTCCGGGGGCAGCGCATCTGGGGGGCGGTGATCCAGCACCTGCTCGACGTCGGCATGGCCTCCGCCGAGCATGTGCTGCTCACCGGCTGCTCCGCCGGCGGCCTCGCCGCGATCCTCCACTGCGACCAGCTCCGCGCCCTCCTCCCCGCCGCCGCCACCGTCAAGTGCCTCTCCGACGGCGGCCTCTTCCTCGACGCCGTGGACGTCGCCGGCGGCAGGAGCCTGAGGTCATACTACGGCGACGTCGTCGGCCTGCAGGCGGTGGCGCCCAACCTTCCCGAGACCTGCACCGACCATCTCGACGCCACCTCGTGCTTCTTCCCTCAGAACATAATCGACGGCATAAAGACACCCATCTTCCTGCTGAATGCGGCGTACGACGTCTGGCAGATCGAGCAGAGCCTGGCCCCTAACGCAGCTGACACCAGCGGCACCTGGCGAGTCTGCAAGTTCAACCGCGCAGCCTGCAACGCGTCTCAGCTGCAGTTCCTGCAAGGTTTCAGAGATCAGATGGTGGCAGCGGTGAGAGTCTTCTCCGAGTCGAGGAGCAACGGGCTGTTCATCAACTCGTGCTTCGCTCACTGCCAGTCCGAGCTGACGGCCACCTGGAATGGTGGCTCTCCTGCTCTCCAGAACAAGGGAATTGCAAAGTCTGTTGGTGACTGGTACTTTGGTCGAGCTGAGGTGAAGGCCATCGATTGCCCCTACCCCTGTGACAAAACATGCCACAACATCATATGACATCATGCACTGACGTTTACTCGCCTCGACCGAATGGAGTGACACACATTTTTGCCTCGAAGTCCTCTCAAGTTCTTCACTCTAGCTAGTAGCTATATACATGTAGAACTATCGAGTTCAGAGCCAAAACATACAAAACAGAGAACCTCACACAAACAGATACAAAGGAAGCAAAACAAAGTTAACAAAAGCAAATAGGAAGGGGGAGAGGGGCAGGGCACATTAATATCGGGAAGCAGTGTGGTGGAGTCATGGGTGTATAATTTCACCTATTAAGAATAAATTA] [+] EMBL AK067689 [ CTTAATTTCTTGAATTGCTATCCGATCTTGAGCAATATATGTCCCTAGCTAGCTAGCTGGGCGTCCGCCATAATTTGCTGCCAATAATAATTAGCCCCATATATCCTTGTAGCTAGGTGAATCATCCCCTTGATATGCCTTGTTAAATATGTAGCTCCGATTTAAGCTCTCTTGCCCATTTTTTTTTCAGAGTTTATAGTTTCATTTTGATTCTTCCGCTCTCTGCTAGCTTC CACACCAAGTTCATCAGCCAATTTCTTCCTGACGAGAAGGCCGTGTAAGAATTTTAGTGAAGTGAGTGTCTTTTTTGTTTTTCGATTGGTCGATCGAGTGCTGGTACAAGCTAGAGGATGGCGATGATGGAGAGGATTGGGGTCACCAAGCTTCATCATCATCTTCTTCTTCTTGTTCTTCTTCTCGTCGTCGCCGCCGCCGGCGGCGGCAGCGTACAGGCGGCGGAGGAGGATGAGATGAGCGGCCGGAGGAGGAGAAGCAGGCGGCGGCGTGCGGCGGACGTGATGGTGCCCATCACCATCCTCAACTCCGCCGTCGACAAGGGAGCCGTGTGCATGGACGGGACGCCGCCGGCGTACCACCTGGACCCGGGCTCCGGCGGCGGCAACCGGAGCTGGGTGGTCAACCTGGAGGGCGGCGGGTGGTGCAACAACGCCCGCACGTGCCGCTTCCGCACCGCCAGCCGCCACGGCTCCTCCGACCACATGGAGCGCCGCATCGCCTTCACCGGCATCATGAGCTCAGCCGCCGCCGACAACCCCGATTTCCACAGCTGGAACCGCGTCAAGATCCGCTACTGCGACAGCGGGTCCTTCGCCGGCGACGCCTTCAACGAGGGATTGAAGCTGCAATTCCGGGGGCAGCGCATCTGGGGGGCGGTGATCCAGCACCTGCTCGACGTCGGCATGGCCTCCGCCGAGCATGTGCTGCTCACCGGCTGCTCCGCCGGCGGCCTCACCGCGATCCTCCACTGCGACCAGCTCCGCGCCCTCCTCCCCGCCGCCGCCACCGTCAAGTGCCTCTCCGACGGCGGCCTCTTCCTCGACGCCGTGGACGTCGCCGGCGGCAGGAGCCTGAGGTCATACTACGGCGACGTCGTCGGCCTGCAGGCGGTGGCGCCCAACCTTCCCGAGACCTGCACCGACCATCTCGACGCCACCTCGTGCTTCTTCCCTCAGAACATAATCGACGGCATAAAGACACCCATCTTCCTGCTGAATGCGGCGTACGACGTCTGGCAGATCGAGCAGAGCCTGGCCCCTAACGCAGCTGACACCAGCGGCACCTGGCGAGTCTGCAAGTTCAACCGCGCAGCCTGCAACGCGTCTCAGCTGCAGTTCCTGCAAGGTTTCAGAGATCAGATGGTGGCAGCGGTGAGAGTCTTCTCCGAGTCGAGGAACAACGGGCTGTTCATCAACTCGTGCTTCGCTCACTGCCAGTCCGAGCTGACGGCCACCTGGAATGGTGGCTCTCCTGCTCTCCAGAACAAGGGAATTGCAAAGTCTGTTGGTGACTGGTACTTTGGTCGAGCTGAGGTGAAGGCCATCGATTGCCCCTACCCCTGTGACAAAACATGCCACAACATCATATGACATCATGTACTGACGTTTACTCGTCTCGACCGAATGGAGTGACACACAT ] consensusID : consensus_3919#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence [ACGCGTCTCACTCCAGTTCCTGCAAGGTTTCAGAGATCAGATGGTGCACGGTGAGAGTCTTCTCCGAGTCGAGGAGCAACGGGCTGTTCATCAACTCGTGCTTCGCTCACTGCCAGTCCGAGCTGACGGCCACCTGGAATGGTGGCTCTCCTGTGACAAACATGCCACAACATCATATGACATCATGTACTGACGTTTACTCGTCTCGACCGAATGGAGTGACACACATTTTTGCCTCGAAGTCCTCTCAAGTTCTTCACTCTAGCTAGTAGCTATATACATGTAGAACTATCGAGTTCAGAGCCAAAACATACAAACAGAGAACCTCACACAACAGATACAAAGGAAGCAAAACAAAGTTAACAAAGCAAATAGGAAGGGGGAGAGGGGCCAGGGCACATTAATATCGGGAAGCAGTGTGGTGGAGTCATGGGTGTATAATTTCACCTATTAAGAATAAATTACAGTATTCACAAAAA] [+] EMBL BI811422 [ACGCGTCTCACTCCAGTTCCTGCAAGGTTTCAGAGATCAGATGGTGCACGGTGAGAGTCTTCTCCGAGTCGAGGAGCAACGGGCTGTTCATCAACTCGTGCTTCGCTCACTGCCAGTCCGAGCTGACGGCCACCTGGAATGGTGGCTCTCCTGTGACAAACATGCCACAACATCATATGACATCATGTACTGACGTTTACTCGTCTCGACCGAATGGAGTGACACACATTTTTGCCTCGAAGTCCTCTCAAGTTCTTCACTCTAGCTAGTAGCTATATACATGTAGAACTATCGAGTTCAGAGCCAAAACATACAAACAGAGAACCTCACACAACAGATACAAAGGAAGCAAAACAAAGTTAACAAAGCAAATAGGAAGGGGGAGAGGGGCCAGGGCACATTAATATCGGGAAGCAGTGTGGTGGAGTCATGGGTGTATAATTTCACCTATTAAGAATAAATTACAGTATTCACAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3919#0 CAGTACACACAGTGCGTTTCCATTTTGTTCTTTCTTCCAACACTTTGGGAGAGAGCTATA 60 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 CCACGTTGCTCTCTCTTGCTTTGCTTGATTTGCGTATCATAATCTTTTTATAATTCGTGC 120 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 TGTTTAAAATTTTAATTAGGAGGTGAATTAAAAGCCGTCCTCGTACGTACATAAATTAGC 180 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 TGGCGAATCTGGCCAGTCTTTAATTCTGCCATATATGTGCATGTGTGTGTACATGTATGG 240 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 AAGGATAGTATTCTCTCCTTAATTTCTTGAATTGCTATCCGATCCTGAGCAATATATGTC 300 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 CCTAGCTAGCTAGCTGGGCGTCCGCCATAATTTGCTGCCAATAATAATTAGCCCCATATA 360 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 TCCTTGTAGCTAGGTGAATCATCCCCTTGATATGCCTTGTTAAATATGTAGCTCCGATTT 420 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 AAGCTCTCTTGCCCATTTTTTTTCAGAGTTTATAGTTTCATTTTGATTCTTCCGCTCTCT 480 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 GCTAGCTTCCACACACCAAGTTCATCAGCCAATTTCTTCCTGACGAGAAGGCCGTGTAAG 540 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 AATTTTAGTGAAGTGAGTGTCTTTTTTGTTTTTCGATTGGTCGATCGAGTGCTGGTACAA 600 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 GCTAGAGGATGGCGATGATGGAGAGGATTGAGGTCACCAAGCTTCATCATCATCTTCTTC 660 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 TTCTTGTTCTTCTTCTCGTCGTCGCCGCCGCCGGCGGCGGCAGCGTACAGGCGGCGGAGG 720 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 AGGATGAGATGAGCGGCCGGAGGAGGAGAAGCAGGCGGCGGCGTGCGGCGGACGTGATGG 780 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 TGCCCATCACCATCCTCAACTCCGCCGTCGACAAGGGAGCCGTGTGCATGGACGGGACGC 840 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 CGCCGGCGTACCACCTGGACCCGGGCTCCGGCGGCGGCAACCGGAGCTGGGTGGTCAACC 900 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 TGGAGGGCGGCGGGTGGTGCAACAACGCCCGCACGCGCCGCTTCCGCACCGCCAGCCGCC 960 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 ACGGCTCCTCCGACCACATGGAGCGCCGCATCGCCTTCACCGGCATCATGAGCTCCGCCG 1020 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 CCGCCGACAACCCCGATTTCCACAGCTGGAACCGCGTCAAGATCCGCTACTGCGACAGCG 1080 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 GGTCCTTCGCCGGCGACGCCTTCAACGAGGGATTGAAGCTGCAATTCCGGGGGCAGCGCA 1140 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 TCTGGGGGGCGGTGATCCAGCACCTGCTCGACGTCGGCATGGCCTCCGCCGAGCATGTGC 1200 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 TGCTCACCGGCTGCTCCGCCGGCGGCCTCGCCGCGATCCTCCACTGCGACCAGCTCCGCG 1260 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 CCCTCCTCCCCGCCGCCGCCACCGTCAAGTGCCTCTCCGACGGCGGCCTCTTCCTCGACG 1320 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 CCGTGGACGTCGCCGGCGGCAGGAGCCTGAGGTCATACTACGGCGACGTCGTCGGCCTGC 1380 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 AGGCGGTGGCGCCCAACCTTCCCGAGACCTGCACCGACCATCTCGACGCCACCTCGTGCT 1440 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 TCTTCCCTCAGAACATAATCGACGGCATAAAGACACCCATCTTCCTGCTGAATGCGGCGT 1500 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 ACGACGTCTGGCAGATCGAGCAGAGCCTGGCCCCTAACGCAGCTGACACCAGCGGCACCT 1560 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 GGCGAGTCTGCAAGTTCAACCGCGCAGCCTGCAACGCGTCTCAGCTGCAGTTCCTGCAAG 1620 consensus_3919#1 ---------------------------------ACGCGTCTCA-CTCCAGTTCCTGCAAG 26 ********** ** ************* consensus_3919#0 GTTTCAGAGATCAGATGGTGGCAGCGGTGAGAGTCTTCTCCGAGTCGAGGAGCAACGGGC 1680 consensus_3919#1 GTTTCAGAGATCAGATGGTGC--ACGGTGAGAGTCTTCTCCGAGTCGAGGAGCAACGGGC 84 ******************** ************************************ consensus_3919#0 TGTTCATCAACTCGTGCTTCGCTCACTGCCAGTCCGAGCTGACGGCCACCTGGAATGGTG 1740 consensus_3919#1 TGTTCATCAACTCGTGCTTCGCTCACTGCCAGTCCGAGCTGACGGCCACCTGGAATGGTG 144 ************************************************************ consensus_3919#0 GCTCTCCTGCTCTCCAGAACAAGGGAATTGCAAAGTCTGTTGGTGACTGGTACTTTGGTC 1800 consensus_3919#1 GCTCTCCTG----------------------------------TGAC------------- 157 ********* **** consensus_3919#0 GAGCTGAGGTGAAGGCCATCGATTGCCCCTACCCCTGTGACAAAACATGCCACAACATCA 1860 consensus_3919#1 ------------------------------------------AAACATGCCACAACATCA 175 ****************** consensus_3919#0 TATGACATCATGCACTGACGTTTACTCGCCTCGACCGAATGGAGTGACACACATTTTTGC 1920 consensus_3919#1 TATGACATCATGTACTGACGTTTACTCGTCTCGACCGAATGGAGTGACACACATTTTTGC 235 ************ *************** ******************************* consensus_3919#0 CTCGAAGTCCTCTCAAGTTCTTCACTCTAGCTAGTAGCTATATACATGTAGAACTATCGA 1980 consensus_3919#1 CTCGAAGTCCTCTCAAGTTCTTCACTCTAGCTAGTAGCTATATACATGTAGAACTATCGA 295 ************************************************************ consensus_3919#0 GTTCAGAGCCAAAACATACAAAACAGAGAACCTCACACAAACAGATACAAAGGAAGCAAA 2040 consensus_3919#1 GTTCAGAGCCAAAACATACAAA-CAGAGAACCTCACACAA-CAGATACAAAGGAAGCAAA 353 ********************** ***************** ******************* consensus_3919#0 ACAAAGTTAACAAAAGCAAATAGGAAGGGGGAGAGGGGC-AGGGCACATTAATATCGGGA 2099 consensus_3919#1 ACAAAGTTAACAAA-GCAAATAGGAAGGGGGAGAGGGGCCAGGGCACATTAATATCGGGA 412 ************** ************************ ******************** consensus_3919#0 AGCAGTGTGGTGGAGTCATGGGTGTATAATTTCACCTATTAAGAATAAATTA-------- 2151 consensus_3919#1 AGCAGTGTGGTGGAGTCATGGGTGTATAATTTCACCTATTAAGAATAAATTACAGTATTC 472 **************************************************** consensus_3919#0 ------- consensus_3919#1 ACAAAAA 479 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||