cluster # 392

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Oryza sativa
cluster # 392 cluster # 392 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_392#0 length = 803 sequences # 1

consensus_392#1 length = 684 sequences # 1

consensusID : consensus_392#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 803
fasta sequence

                              [CTCCCATTCGGAATATTGATTCTTGCCCTCTCGCCCGCCTTCCTGGTGCTTCTTGGGAGTTGGGAGGGAGGGAGGGGATGGACTGGCGGCCGGACGGCGCGGCGCCGCCGGTTCCGGTGGCGGCGGCGCCCGTCGTACCTGTGGATTTCACGGTGGTCAAGAGGCGGCTCGGTGGCGGCGGCGACATGGAGGTGCGCGACGCGTCGGGCGGCCTCGCGTTCCGGTTCGTGGCGGCGGCGGCGGCGGGCGGTGGCGGGGGCGGGGGCAGGGCGCTGCTCGACGCCGCCGGTGGTGTTCTCGTCACCGTGAGGAGCGGCGAGGGAGAGTGGCAAGCATTCAGAGGAAACAGTTTGGATTATAAAGACATAATTTACACGGCAAAATCAATATCAGTTTGTTCAAATCGAAATGAAGTACATGTATTCATGCCACCAAGAAGCAATTTTCAAGATACGAAAGCAAGCTACAGGCTCATAGGAAATACATCCCGGAGAGCATGCACAATAATAAGTGGGGACTCCATTGTTTCTCAGACAAATCTCCTATATAAACTCAAGAAGGTTGTCTATTCAACACGGAAGTTTAGAGTGACCATTTACCCAGGAAATGATACACTTCTTGTCATGGCAATGGTTATGAACTTCTTTATGGAAAAATGACACACAATCGGAATGCCTTTTTGAGGAAATGATAACTTCCTGCCAGCATAAATCCTGTATATATTTTTCTTTATTATTGACCAGATTGTTTACGCCCTTAATATGGAATTATGGATGCCTCATTCTTCTGTCATTCAGCAAATT]

[+] EMBL AK111022             [CTCCCATTCGGAATATTGATTCTTGCCCTCTCGCCCGCCTTCCTGGTGCTTCTTGGGAGTTGGGAGGGAGGGAGGGGATGGACTGGCGGCCGGACGGCGCGGCGCCGCCGGTTCCGGTGGCGGCGGCGCCCGTCGTACCTGTGGATTTCACGGTGGTCAAGAGGCGGCTCGGTGGCGGCGGCGACATGGAGGTGCGCGACGCGTCGGGCGGCCTCGCGTTCCGGTTCGTGGCGGCGGCGGCGGCGGGCGGTGGCGGGGGCGGGGGCAGGGCGCTGCTCGACGCCGCCGGTGGTGTTCTCGTCACCGTGAGGAGCGGCGAGGGAGAGTGGCAAGCATTCAGAGGAAACAGTTTGGATTATAAAGACATAATTTACACGGCAAAATCAATATCAGTTTGTTCAAATCGAAATGAAGTACATGTATTCATGCCACCAAGAAGCAATTTTCAAGATACGAAAGCAAGCTACAGGCTCATAGGAAATACATCCCGGAGAGCATGCACAATAATAAGTGGGGACTCCATTGTTTCTCAGACAAATCTCCTATATAAACTCAAGAAGGTTGTCTATTCAACACGGAAGTTTAGAGTGACCATTTACCCAGGAAATGATACACTTCTTGTCATGGCAATGGTTATGAACTTCTTTATGGAAAAATGACACACAATCGGAATGCCTTTTTGAGGAAATGATAACTTCCTGCCAGCATAAATCCTGTATATATTTTTCTTTATTATTGACCAGATTGTTTACGCCCTTAATATGGAATTATGGATGCCTCATTCTTCTGTCATTCAGCAAATT]




>consensus_392#0
CTCCCATTCGGAATATTGATTCTTGCCCTCTCGCCCGCCTTCCTGGTGCTTCTTGGGAGT
TGGGAGGGAGGGAGGGGATGGACTGGCGGCCGGACGGCGCGGCGCCGCCGGTTCCGGTGG
CGGCGGCGCCCGTCGTACCTGTGGATTTCACGGTGGTCAAGAGGCGGCTCGGTGGCGGCG
GCGACATGGAGGTGCGCGACGCGTCGGGCGGCCTCGCGTTCCGGTTCGTGGCGGCGGCGG
CGGCGGGCGGTGGCGGGGGCGGGGGCAGGGCGCTGCTCGACGCCGCCGGTGGTGTTCTCG
TCACCGTGAGGAGCGGCGAGGGAGAGTGGCAAGCATTCAGAGGAAACAGTTTGGATTATA
AAGACATAATTTACACGGCAAAATCAATATCAGTTTGTTCAAATCGAAATGAAGTACATG
TATTCATGCCACCAAGAAGCAATTTTCAAGATACGAAAGCAAGCTACAGGCTCATAGGAA
ATACATCCCGGAGAGCATGCACAATAATAAGTGGGGACTCCATTGTTTCTCAGACAAATC
TCCTATATAAACTCAAGAAGGTTGTCTATTCAACACGGAAGTTTAGAGTGACCATTTACC
CAGGAAATGATACACTTCTTGTCATGGCAATGGTTATGAACTTCTTTATGGAAAAATGAC
ACACAATCGGAATGCCTTTTTGAGGAAATGATAACTTCCTGCCAGCATAAATCCTGTATA
TATTTTTCTTTATTATTGACCAGATTGTTTACGCCCTTAATATGGAATTATGGATGCCTC
ATTCTTCTGTCATTCAGCAAATT

consensusID : consensus_392#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence

                              [GGTGTAGAGGCCGGGTTCTNTCCATTGTCTAATAAAGTTTTTGTGCATTAGTTATTGATGTAGCCTGGTATGTCTGATGCATGACAAATATTCTTTTAAGTTAATGTGCATGTTTCTTCATAGTGGTACTTTGTTTGAACTTTCCGAACATGATGTAGAATATCTTAGAGTATATTATTAAGTGCTAAATTGTCTTTCCAGGGAGAGTGGCAAGCATTCAGAGGAAACAGTTTGGATTATAAAGACATAATTTACACGGCAAAATCAATATCAGTTTGTTCAAATCGAAATGAAGTACATGTATTCATGCCACCAAGAAGCAATTTTCAAGATACGAAAGCAAGCTACAGGCTCATAGGAAATACATCCCGGAGAGCATGCACAATAATAAGTGGGGACTCCATTGTTTCTCAGACAAATCTCCTATATAAACTCAAGAAGGTTGTCTATTCAACACGGAAGTTTAGAGTGACCATTTACCCAGGAAATGATACACTTCTTGTCATGGCAATGGTTATGAACTTCTTTATGGAAAAATGACACACAATCGGAATGCCTTTTTGAGGAAATGATAACTTCCTGCCAGCATAAATCCTGTATATATTTTTCTTTATTATTGACCAGATTGTTTACGCCCTTAATATGGAATTATGGATGCCTCATTCTTCTGTCATTCAAAAAAAA]

[-] EMBL CA760214             [GGTGTAGAGGCCGGGTTCTNTCCATTGTCTAATAAAGTTTTTGTGCATTAGTTATTGATGTAGCCTGGTATGTCTGATGCATGACAAATATTCTTTTAAGTTAATGTGCATGTTTCTTCATAGTGGTACTTTGTTTGAACTTTCCGAACATGATGTAGAATATCTTAGAGTATATTATTAAGTGCTAAATTGTCTTTCCAGGGAGAGTGGCAAGCATTCAGAGGAAACAGTTTGGATTATAAAGACATAATTTACACGGCAAAATCAATATCAGTTTGTTCAAATCGAAATGAAGTACATGTATTCATGCCACCAAGAAGCAATTTTCAAGATACGAAAGCAAGCTACAGGCTCATAGGAAATACATCCCGGAGAGCATGCACAATAATAAGTGGGGACTCCATTGTTTCTCAGACAAATCTCCTATATAAACTCAAGAAGGTTGTCTATTCAACACGGAAGTTTAGAGTGACCATTTACCCAGGAAATGATACACTTCTTGTCATGGCAATGGTTATGAACTTCTTTATGGAAAAATGACACACAATCGGAATGCCTTTTTGAGGAAATGATAACTTCCTGCCAGCATAAATCCTGTATATATTTTTCTTTATTATTGACCAGATTGTTTACGCCCTTAATATGGAATTATGGATGCCTCATTCTTCTGTCATTCAAAAAAAA]




>consensus_392#1
GGTGTAGAGGCCGGGTTCTNTCCATTGTCTAATAAAGTTTTTGTGCATTAGTTATTGATG
TAGCCTGGTATGTCTGATGCATGACAAATATTCTTTTAAGTTAATGTGCATGTTTCTTCA
TAGTGGTACTTTGTTTGAACTTTCCGAACATGATGTAGAATATCTTAGAGTATATTATTA
AGTGCTAAATTGTCTTTCCAGGGAGAGTGGCAAGCATTCAGAGGAAACAGTTTGGATTAT
AAAGACATAATTTACACGGCAAAATCAATATCAGTTTGTTCAAATCGAAATGAAGTACAT
GTATTCATGCCACCAAGAAGCAATTTTCAAGATACGAAAGCAAGCTACAGGCTCATAGGA
AATACATCCCGGAGAGCATGCACAATAATAAGTGGGGACTCCATTGTTTCTCAGACAAAT
CTCCTATATAAACTCAAGAAGGTTGTCTATTCAACACGGAAGTTTAGAGTGACCATTTAC
CCAGGAAATGATACACTTCTTGTCATGGCAATGGTTATGAACTTCTTTATGGAAAAATGA
CACACAATCGGAATGCCTTTTTGAGGAAATGATAACTTCCTGCCAGCATAAATCCTGTAT
ATATTTTTCTTTATTATTGACCAGATTGTTTACGCCCTTAATATGGAATTATGGATGCCT
CATTCTTCTGTCATTCAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_392#0      CTCCCATTCGGAATATTGATTCTTGCCCTCTCGCCCGCCTTCCTGGTGCTTCTTGGGAGT 60
consensus_392#1      ------------------------------------------------------------
                                                                                 

consensus_392#0      TGGGAGGGAGGGAGGGGATGGACTGGCGGCCGGACGGCGCGGCGCCGCCGGTTCCGGTGG 120
consensus_392#1      -----------------------------------GGTGTAGAG--GCCGGGTTCTNTC- 22
                                                        ** *  * *  ***** * *  *  

consensus_392#0      CGGCGGCGCCCGTCGTACCTGTGGATTTCACGGTGGTCAAGAGGCGGCTCGGTGGCGGCG 180
consensus_392#1      CATTGTCTAATAAAGTTTTTGTGCATT----AGTTATT--GATGTAGCCTGGTA-TGTCT 75
                     *   * *       **   **** ***     **  *   ** *  **  ***   * * 

consensus_392#0      GCGACATGGAGGTGCGCGACGCGTCGGGCGGCCTCGCGTTCCGGTTCGTGGCGGCGGCGG 240
consensus_392#1      GATGCAT---GACAAATATTCTTTTAAGTTAATGTGCATGTTTCTTCATAGTGGTACT-- 130
                     *   ***   *            *   *       ** *     *** * * **      

consensus_392#0      CGGCGGGCGGTGGCGGGGGCGGGGGCAGGGCGCTGCTCGACGCCGCCGGTGGTGTTCTCG 300
consensus_392#1      TTGTTTGAACTTTCCGAACATGATGTAGAATAT--CTTAGAGTATATTATTAAGTGCTAA 188
                       *   *   *  * *     *  * **       **    *       *   ** **  

consensus_392#0      TCACCGTGAGGAGCGGCGAGGGAGAGTGGCAAGCATTCAGAGGAAACAGTTTGGATTATA 360
consensus_392#1      --ATTGT-----CTTTCCAGGGAGAGTGGCAAGCATTCAGAGGAAACAGTTTGGATTATA 241
                       *  **         * ******************************************

consensus_392#0      AAGACATAATTTACACGGCAAAATCAATATCAGTTTGTTCAAATCGAAATGAAGTACATG 420
consensus_392#1      AAGACATAATTTACACGGCAAAATCAATATCAGTTTGTTCAAATCGAAATGAAGTACATG 301
                     ************************************************************

consensus_392#0      TATTCATGCCACCAAGAAGCAATTTTCAAGATACGAAAGCAAGCTACAGGCTCATAGGAA 480
consensus_392#1      TATTCATGCCACCAAGAAGCAATTTTCAAGATACGAAAGCAAGCTACAGGCTCATAGGAA 361
                     ************************************************************

consensus_392#0      ATACATCCCGGAGAGCATGCACAATAATAAGTGGGGACTCCATTGTTTCTCAGACAAATC 540
consensus_392#1      ATACATCCCGGAGAGCATGCACAATAATAAGTGGGGACTCCATTGTTTCTCAGACAAATC 421
                     ************************************************************

consensus_392#0      TCCTATATAAACTCAAGAAGGTTGTCTATTCAACACGGAAGTTTAGAGTGACCATTTACC 600
consensus_392#1      TCCTATATAAACTCAAGAAGGTTGTCTATTCAACACGGAAGTTTAGAGTGACCATTTACC 481
                     ************************************************************

consensus_392#0      CAGGAAATGATACACTTCTTGTCATGGCAATGGTTATGAACTTCTTTATGGAAAAATGAC 660
consensus_392#1      CAGGAAATGATACACTTCTTGTCATGGCAATGGTTATGAACTTCTTTATGGAAAAATGAC 541
                     ************************************************************

consensus_392#0      ACACAATCGGAATGCCTTTTTGAGGAAATGATAACTTCCTGCCAGCATAAATCCTGTATA 720
consensus_392#1      ACACAATCGGAATGCCTTTTTGAGGAAATGATAACTTCCTGCCAGCATAAATCCTGTATA 601
                     ************************************************************

consensus_392#0      TATTTTTCTTTATTATTGACCAGATTGTTTACGCCCTTAATATGGAATTATGGATGCCTC 780
consensus_392#1      TATTTTTCTTTATTATTGACCAGATTGTTTACGCCCTTAATATGGAATTATGGATGCCTC 661
                     ************************************************************

consensus_392#0      ATTCTTCTGTCATTCAGCAAATT 803
consensus_392#1      ATTCTTCTGTCATTCAAAAAAAA 684
                     ****************  ***