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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3920#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1199 fasta sequence
[AGCACCAACCCCAAATCCCCTCTCCCCCCCAATCCTCAAAGATGCCGTCCTCCTCCTCCTACTCCTCCTCCGTTAGCAACCCTGGTCCCGAGCTACCTAGGTCAGCGCGCCAAGAACCATGCTCTTGTCTCCTCCAGCTCCACCGCCGCTGAAGCCGCCCGTCCGCCTGAATCGACTCCCGCAGCGGCAGCCGGGAGGCGGCGGCCGGTTCTTGCTGCCCCGGAGGAGGCCAAGAACGCCGCGGTCCTTTGGCGTGGTGGTGTGCATGGCGGAGATGGCCAGGGTTGGGACCGGGTCCTCGTGGGAGGAGGAGTTGGGCGTCCCGGAGGAGAGCGACGCGATCCTGGGAGGCGGAGGCGGGGACGGGCAAAGGCGGCAGGCGACCAGGTGGGAGCTCGTCGAGGCGAGACTGAACCAGACGAGTAAATGGCTGGTCGCGGGTTGTTATACTTCTGCAGCCATTTGGAAGCATGATGCTCTTATTATGTGGGCTATGATTGGTGCTGTTCTAAACTCTATGTTTTCAAATCTTCTTAAACGGATATTCAACCATGAAAGGCCTGTGTCTGCTTTGCGGTCTGATCCTGGAATGCCTTCATCCCACGCGCAATCTTTTCTCTATTCTGCGGTGTTTCTAATTCTTTCATTGTTCTACTGGCTCGGGAGAACTTATCTGTCAGTTATTCTTGGGGTTGCAATTCTAGCAATGTGCTGCTATCTTTCGTGGTTACGAGTGTCGCAGCACCTCCATACACTGAACCAGGTTCTTGTGGGTGCTATAGTAGGATCAGCCTTTGGTGCTATGTGGTTTGCGCTTTTTAATTTGCTCGTGCAAGAGGCGTTTGCTTCTTCCGTACCGGTTCAGATTGCGGTGACTATCGGGACGGCAATATTATGCATCGGCTTTGTCATCCATGTCGTTCGCCACTGGTTCAAGGATGAGTGAATAGCAATATGAAATCGCAATGACCAATAGGTGATTGATTGAGACACAAAATCAACTGGTAACGGAAGGCTCTGTATACTCTATGGGAAGATCATACTGGAATTATTTGGGAGTGGGTTCGCAAGATAGTCACAGATAGCAACCTCAGTTCATTTTTTGGCATTTTTGCTGCAGGATAGTCACAGCACTGATTCTTGTAATACAGAACAGTTTATGCTTGAAATTTCTTCCACGAAATGATAATGATGTCCTT]
[+] EMBL AK061066 [AGCACCAACCCCAAATCCCCTCTCCCCCCCAATCCTCAAAGATGCCGTCCTCCTCCTCCTACTCCTCCTCCGTTAGCAACCCTGGTCCCGAGCTACCTAGGTCAGCGCGCCAAGAACCATGCTCTTGTCTCCTCCAGCTCCACCGCCGCTGAAGCCGCCCGTCCGCCTGAATCGACTCCCGCAGCGGCAGCCGGGAGGCGGCGGCCGGTTCTTGCTGCCCCGGAGGAGGCCAAGAACGCCGCGGTCCTTTGGCGTGGTGGTGTGCATGGCGGAGATGGCCAGGGTTGGGACCGGGTCCTCGTGGGAGGAGGAGTTGGGCGTCCCGGAGGAGAGCGACGCGATCCTGGGAGGCGGAGGCGGGGACGGGCAAAGGCGGCAGGCGACCAGGTGGGAGCTCGTCGAGGCGAGACTGAACCAGACGAGTAAATGGCTGGTCGCGGGTTGTTATACTTCTGCAGCCATTTGGAAGCATGATGCTCTTATTATGTGGGCTATGATTGGTGCTGTTCTAAACTCTATGTTTTCAAATCTTCTTAAACGGATATTCAACCATGAAAGGCCTGTGTCTGCTTTGCGGTCTGATCCTGGAATGCCTTCATCCCACGCGCAATCTTTTCTCTATTCTGCGGTGTTTCTAATTCTTTCATTGTTCTACTGGCTCGGGAGAACTTATCTGTCAGTTATTCTTGGGGTTGCAATTCTAGCAATGTGCTGCTATCTTTCGTGGTTACGAGTGTCGCAGCACCTCCATACACTGAACCAGGTTCTTGTGGGTGCTATAGTAGGATCAGCCTTTGGTGCTATGTGGTTTGCGCTTTTTAATTTGCTCGTGCAAGAGGCGTTTGCTTCTTCCGTACCGGTTCAGATTGCGGTGACTATCGGGACGGCAATATTATGCATCGGCTTTGTCATCCATGTCGTTCGCCACTGGTTCAAGGATGAGTGAATAGCAATATGAAATCGCAATGACCAATAGGTGATTGATTGAGACACAAAATCAACTGGTAACGGAAGGCTCTGTATACTCTATGGGAAGATCATACTGGAATTATTTGGGAGTGGGTTCGCAAGATAGTCACAGATAGCAACCTCAGTTCATTTTTTGGCATTTTTGCTGCAGGATAGTCACAGCACTGATTCTTGTAATACAGAACAGTTTATGCTTGAAAT ]
[+] EMBL AK059507 [ TCTCCCCCCCAATCCTCAAAGATGCCGTCCTCCTCCTCCTACTCCTCCTCCGTTAGCAACCCTGGTCCCGAGCTACCTAGGTCAGCGCGCCAAGAACCATGCTCTTGTCTCCTCCAGCTCCACCGCCGCTGAAGCCGCCCGTCCGCCTGAATCGACTCCCGCAGCGGCAGCCGGGAGGCGGCGGCCGGTTCTTGCTGCCCCGGAGGAGGCCAAGAACGCCGCGGTCCTTTGGCGTGGTGGTGTGCATGGCGGAGATGGCCAGGGTTGGGACCGGGTCCTCGTGGGAGGAGGAGTTGGGCGTCCCGGAGGAGAGCGACGCGATCCTGGGAGGCGGAGGCGGGGACGGGCAAAGGCGGCAGGCGACCAGGTGGGAGCTCGTCGAGGCGAGACTGAACCAGACGAGTAAATGGCTGGTCGCGGGTTGTTATACTTCTGCAGCCATTTGGAAGCATGATGCTCTTATTATGTGGGCTATGATTGGTGCTGTTCTAAACTCTATGTTTTCAAATCTTCTTAAACGGATATTCAACCATGAAAGGCCTGTGTCTGCTTTGCGGTCTGATCCTGGAATGCCTTCATCCCACGCGCAATCTTTTCTCTATTCTGCGGTGTTTCTAATTCTTTCATTGTTCTACTGGCTCGGGAGAACTTATCTGTCAGTTATTCTTGGGGTTGCAATTCTAGCAATGTGCTGCTATCTTTCGTGGTTACGAGTGTCGCAGCACCTCCATACACTGAACCAGGTTCTTGTGGGTGCTATAGTAGGATCAGCCTTTGGTGCTATGTGGTTTGCGCTTTTTAATTTGCTCGTGCAAGAGGCGTTTGCTTCTTCCGTACCGGTTCAGATTGCGGTGACTATCGGGACGGCAATATTATGCATCGGCTTTGTCATCCATGTCGTTCGCCACTGGTTCAAGGATGAGTGAATAGCAATATGAAATCGCAATGACCAATAGGTGATTGATTGAGACACAAAATCAACTGGTAACGGAAGGCTCTGTATACTCTATGGGAAGATCATACTGGAATTATTTGGGAGTGGGTTCGCAAGATAGTCACAGATAGCAACCTCAGTTCATTTTTTGGCATTTTTGCTGCAGGATAGTCACAGCACTGATTCTTGTAATACAGAACAGTTTATGCTTGAAATTTCTTCCACGAAATGATAATGATGTCCTT]
consensusID : consensus_3920#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence
[TCTTTTAGTTTGATTTGCGATTTCCAAGTTCTTCAGTGCATTCTAATCATAATTCTACTTATGTGCACGTCGTGGTTACGAGTGTCGCAGCGCCTCCATACACTGAACCANGGTTCTTGTGGGTGCTATAGTAGGATCAGCCTTTGGTGCTATGTGGTTTGCGCTTTTTAATTTGCTCGTGCNAGAGGCGTTTGCTTCTTCCGTACCGGTTCAGATTGCGGTGACTATCGGGACGGCAATATTATGCATCGGCTTTGTCATCCATGTCGTTCGCCACCTGGTTCAAGGATGAGTGACTAGCNATATGAAATCGCAATGACCCATAGGTGATTGATTGAGACACAAAATCACTGGTAACGGAAGGCTCTGTATACTCTATGGGAAGATCATACTGGAATTATTTGGGAGTGGGTTCGCAAGATAGTCACAGATAGCAACCTCAGTTCATTTTTTGGCATTTTTGCTGCAGGATAGTCACAGCCTGATTCTTGTAATACAGAACGTTTATGCTTGAAATTTCTTCCANCGAAATGATAATGATGTCAAAAAAA]
[+] EMBL BM418543 [TCTTTTAGTTTGATTTGCGATTTCCAAGTTCTTCAGTGCATTCTAATCATAATTCTACTTATGTGCACGTCGTGGTTACGAGTGTCGCAGCGCCTCCATACACTGAACCANGGTTCTTGTGGGTGCTATAGTAGGATCAGCCTTTGGTGCTATGTGGTTTGCGCTTTTTAATTTGCTCGTGCNAGAGGCGTTTGCTTCTTCCGTACCGGTTCAGATTGCGGTGACTATCGGGACGGCAATATTATGCATCGGCTTTGTCATCCATGTCGTTCGCCACCTGGTTCAAGGATGAGTGACTAGCNATATGAAATCGCAATGACCCATAGGTGATTGATTGAGACACAAAATCACTGGTAACGGAAGGCTCTGTATACTCTATGGGAAGATCATACTGGAATTATTTGGGAGTGGGTTCGCAAGATAGTCACAGATAGCAACCTCAGTTCATTTTTTGGCATTTTTGCTGCAGGATAGTCACAGCCTGATTCTTGTAATACAGAACGTTTATGCTTGAAATTTCTTCCANCGAAATGATAATGATGTCAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3920#0 AGCACCAACCCCAAATCCCCTCTCCCCCCCAATCCTCAAAGATGCCGTCCTCCTCCTCCT 60
consensus_3920#1 ------------------------------------------------------------
consensus_3920#0 ACTCCTCCTCCGTTAGCAACCCTGGTCCCGAGCTACCTAGGTCAGCGCGCCAAGAACCAT 120
consensus_3920#1 ------------------------------------------------------------
consensus_3920#0 GCTCTTGTCTCCTCCAGCTCCACCGCCGCTGAAGCCGCCCGTCCGCCTGAATCGACTCCC 180
consensus_3920#1 ------------------------------------------------------------
consensus_3920#0 GCAGCGGCAGCCGGGAGGCGGCGGCCGGTTCTTGCTGCCCCGGAGGAGGCCAAGAACGCC 240
consensus_3920#1 ------------------------------------------------------------
consensus_3920#0 GCGGTCCTTTGGCGTGGTGGTGTGCATGGCGGAGATGGCCAGGGTTGGGACCGGGTCCTC 300
consensus_3920#1 ------------------------------------------------------------
consensus_3920#0 GTGGGAGGAGGAGTTGGGCGTCCCGGAGGAGAGCGACGCGATCCTGGGAGGCGGAGGCGG 360
consensus_3920#1 ------------------------------------------------------------
consensus_3920#0 GGACGGGCAAAGGCGGCAGGCGACCAGGTGGGAGCTCGTCGAGGCGAGACTGAACCAGAC 420
consensus_3920#1 ------------------------------------------------------------
consensus_3920#0 GAGTAAATGGCTGGTCGCGGGTTGTTATACTTCTGCAGCCATTTGGAAGCATGATGCTCT 480
consensus_3920#1 ------------------------------------------------------------
consensus_3920#0 TATTATGTGGGCTATGATTGGTGCTGTTCTAAACTCTATGTTTTCAAATCTTCTTAAACG 540
consensus_3920#1 ------------------------------------------------------------
consensus_3920#0 GATATTCAACCATGAAAGGCCTGTGTCTGCTTTGCGGTCTGATCCTGGAATGCCTTCATC 600
consensus_3920#1 ------------------------------------------------------------
consensus_3920#0 CCACGCGCAATCTTTTCTCTATTCTGCGGTGTTTCTAATTCTTTCATTGTTCTACTGGCT 660
consensus_3920#1 --------------------------------------------------TCTTTTAGTT 10
*** * * *
consensus_3920#0 CGGGAGAACTTATCTGTCAGTTATTCTTGGGGTTGCAATTCTAGCAATGTGCTGCTATCT 720
consensus_3920#1 TG--ATTTGCGATTTCCAAGTTCTTCAGTGCATTCTAATCATAATTCTACTTATGTGCAC 68
* * ** * **** *** * ** *** ** * *
consensus_3920#0 TTCGTGGTTACGAGTGTCGCAGCACCTCCATACACTGAACCAGG-TTCTTGTGGGTGCTA 779
consensus_3920#1 GTCGTGGTTACGAGTGTCGCAGCGCCTCCATACACTGAACCANGGTTCTTGTGGGTGCTA 128
********************** ****************** * ***************
consensus_3920#0 TAGTAGGATCAGCCTTTGGTGCTATGTGGTTTGCGCTTTTTAATTTGCTCGTGCAAGAGG 839
consensus_3920#1 TAGTAGGATCAGCCTTTGGTGCTATGTGGTTTGCGCTTTTTAATTTGCTCGTGCNAGAGG 188
****************************************************** *****
consensus_3920#0 CGTTTGCTTCTTCCGTACCGGTTCAGATTGCGGTGACTATCGGGACGGCAATATTATGCA 899
consensus_3920#1 CGTTTGCTTCTTCCGTACCGGTTCAGATTGCGGTGACTATCGGGACGGCAATATTATGCA 248
************************************************************
consensus_3920#0 TCGGCTTTGTCATCCATGTCGTTCGCCAC-TGGTTCAAGGATGAGTGAATAGCAATATGA 958
consensus_3920#1 TCGGCTTTGTCATCCATGTCGTTCGCCACCTGGTTCAAGGATGAGTGACTAGCNATATGA 308
***************************** ****************** **** ******
consensus_3920#0 AATCGCAATGACCAATAGGTGATTGATTGAGACACAAAATCAACTGGTAACGGAAGGCTC 1018
consensus_3920#1 AATCGCAATGACCCATAGGTGATTGATTGAGACACAAAATCA-CTGGTAACGGAAGGCTC 367
************* **************************** *****************
consensus_3920#0 TGTATACTCTATGGGAAGATCATACTGGAATTATTTGGGAGTGGGTTCGCAAGATAGTCA 1078
consensus_3920#1 TGTATACTCTATGGGAAGATCATACTGGAATTATTTGGGAGTGGGTTCGCAAGATAGTCA 427
************************************************************
consensus_3920#0 CAGATAGCAACCTCAGTTCATTTTTTGGCATTTTTGCTGCAGGATAGTCACAGCACTGAT 1138
consensus_3920#1 CAGATAGCAACCTCAGTTCATTTTTTGGCATTTTTGCTGCAGGATAGTCACAGC-CTGAT 486
****************************************************** *****
consensus_3920#0 TCTTGTAATACAGAACAGTTTATGCTTGAAATTTCTTCCAC-GAAATGATAATGATGTCC 1197
consensus_3920#1 TCTTGTAATACAGAAC-GTTTATGCTTGAAATTTCTTCCANCGAAATGATAATGATGTCA 545
**************** *********************** *****************
consensus_3920#0 TT---- 1199
consensus_3920#1 AAAAAA 551
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||