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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3928#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1238 fasta sequence
[TCGCCGGAGAAGAAGACATCGCCAACATATACCCCCCCTCCCTACCTAGACTCAGATCAGATCACCTGCCCATCGACGAGCACAAGAGCGATCCATTCCTGGTTTGAATCGAGCTTGGTTTGTTTGGTTGGTTGGTTTCTTGGAGTGGATGATGGCGAGGTGGTGCGTGGGGTGGCCGGCGGCGGCGAGGGGTGGTCGGGATGAGCTGACGTGGCAGGCGGAGCTGACGGCGCACGCGGCGGGGGAGTTCTCCATGGCGGCGGCGCAGGCCAACGCGGTGATGGAGGACCAGGCGCAGGTCATGGCGTCGCCCGGCGCCACGCTCGTCGGCGTCTATGATGGCCATGGCGGCCCCGACGCCTCCCGCTTCCTCCGCTCCCGCCTATTCCCTCTCATCCATGAGTTCGCGGCGGAGCGCGGCGGCGCGGTGGACGCCGACGTGATCCGGAAGGCGTTCCTGGCGGCCGACGAGGAGTACCTCCAGCTGCTGCGGTGGTCGCTGCCGAACATGTCCCGCGCGGCCGCCTCGGGCTCCTGCTGCCTCCTGGGCGCCATCTCCGGCGACACGCTCTACGTCGCCAACGCCGGCGACTCCCGCGCTGTCCTCGGCCGCCGCGCGGCGGCCGGCCAGACCGTCGCCGAGCGGCTCTCCACCGAGCACAACGTGGCCTCGGAGGAGGTCCGGAGGGAGCTCGCCGCGCTCCACCCCGACGACGGCGAGGTCGTGGTCCACGCCCGCGGCGCGTGGAGGGTGAAGGGGATCATCCAGGTGGCGCGCGCCATCGGCGACGTGTACCTCAAGACGCCGGAGTTCAAGCGCGACCCGGCGGTGCAGCGGTTATGCAGCGCCGCCGCCGCCGTCGAGCTGGCGCGGCCGGTGGTCACCGCCGAGCCGTCCATCCACGCCCGGAAGCTCAAGGCGGGCGTCGACCTGTTCGTCGTGTTCGCCTCCGACGGCCTATGGGAGCACCTCTCCGACGAGGCGGCGGTGCAGCTGGTGTCCAAGAGCTCGACGAGGAGAGGCGTGGCGGCGAGGCTGGTGCAGGCAGCGCTCGGGGAGGCGGCGAGGAAGCGGGAGGTGAGGCGCGGCGACCTGCGGCGGATCGAGCGAGGGGTGAGGCGCCACTTCCACGACGACATCACCGCCGTCGTCGTCTTCCTCGACCTCGACGACGACGGCGGCCGCCGCGCGCGCCGCCGTGGCAGGGTCGTCGACTCCAGCAGCAGCAGAAGCGGCA]
[+] EMBL AK102668 [TCGCCGGAGAAGAAGACATCGCCAACATATACCCCCCCTCCCTACCTAGACTCAGATCAGATCACCTGCCCATCGACGAGCACAAGAGCGATCCATTCCTGGTTTGAATCGAGCTTGGTTTGTTTGGTTGGTTGGTTTCTTGGAGTGGATGATGGCGAGGTGGTGCGTGGGGTGGCCGGCGGCGGCGAGGGGTGGTCGGGATGAGCTGACGTGGCAGGCGGAGCTGACGGCGCACGCGGCGGGGGAGTTCTCCATGGCGGCGGCGCAGGCCAACGCGGTGATGGAGGACCAGGCGCAGGTCATGGCGTCGCCCGGCGCCACGCTCGTCGGCGTCTATGATGGCCATGGCGGCCCCGACGCCTCCCGCTTCCTCCGCTCCCGCCTATTCCCTCTCATCCATGAGTTCGCGGCGGAGCGCGGCGGCGCGGTGGACGCCGACGTGATCCGGAAGGCGTTCCTGGCGGCCGACGAGGAGTACCTCCAGCTGCTGCGGTGGTCGCTGCCGAACATGTCCCGCGCGGCCGCCTCGGGCTCCTGCTGCCTCCTGGGCGCCATCTCCGGCGACACGCTCTACGTCGCCAACGCCGGCGACTCCCGCGCTGTCCTCGGCCGCCGCGCGGCGGCCGGCCAGACCGTCGCCGAGCGGCTCTCCACCGAGCACAACGTGGCCTCGGAGGAGGTCCGGAGGGAGCTCGCCGCGCTCCACCCCGACGACGGCGAGGTCGTGGTCCACGCCCGCGGCGCGTGGAGGGTGAAGGGGATCATCCAGGTGGCGCGCGCCATCGGCGACGTGTACCTCAAGACGCCGGAGTTCAAGCGCGACCCGGCGGTGCAGCGGTTATGCAGCGCCGCCGCCGCCGTCGAGCTGGCGCGGCCGGTGGTCACCGCCGAGCCGTCCATCCACGCCCGGAAGCTCAAGGCGGGCGTCGACCTGTTCGTCGTGTTCGCCTCCGACGGCCTATGGGAGCACCTCTCCGACGAGGCGGCGGTGCAGCTGGTGTCCAAGAGCTCGACGAGGAGAGGCGTGGCGGCGAGGCTGGTGCAGGCAGCGCTCGGGGAGGCGGCGAGGAAGCGGGAGGTGAGGCGCGGCGACCTGCGGCGGATCGAGCGAGGGGTGAGGCGCCACTTCCACGACGACATCACCGCCGTCGTCGTCTTCCTCGACCTCGACGACGACGGCGGCCGCCGCGCGCGCCGCCGTGGCAGGG ]
[-] EMBL CB668517 [ TGGCCTCGGAGGAGGTCAGGAGGGAGCTCGCCGCGCTCCACCCAGACGACGGCGAGGTCGTGGTCCACACCCGCGGCGCGTGGAGGATGAAGGGGATCATCCAGGTGGCGCGCGCCATCGGCGACGTGTACCTCAAGACGCCGGAGTTCAAGCGCGACCCGGCGGTGCAGCGGTTATGCAGCGCCGCCGCCGCCGTCGAGCTGGCGCGGCCGGTGGTCACCGCCGAGCCGTCCATCCACGCCCGGAAGCTCAAGGCGGGCGTCGACCTGTTCGTCGTGTTCGCCTCCGACGGCCTATGGGAGCACCTCTCCGACGAGGCGGCGGTGCAGCTGGTGTCCAAGAGCTCGACGAGGAGAGGCGTGGCGGCGAGGCTGGTGCAGGCAGCGCTCGGGGAGGCGGCGAGGAAGCGGGAGGTGAGGCGCGGCGACCTGCGGCGGATCGAGCGAGGGGTGAGGCGCCACTTCCACGACGACATCACCGCCGTCGTCGTCTTCCTCGACCTCGACGACGACGGCGGCCGCCGCGCGCGCCGCCGTGGCAGGGTCGTCGACTCCAGCAGCAGCAGAAGCGGCA]
consensusID : consensus_3928#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 810 fasta sequence
[CCTTTTTTTTTTTAAGATAAGACCGAGGAACACCGTGTTGGACTTATTGGCAACAAGTCCACAAAGTCAAAAGTCAAAGCTCATCCTCCCCATGCTGTTGCAGTCTTTGCCACATATATGAAGCCAAGCAGGTCAGTCACGGGCTTCACGTCGCCTCGCCGGAGAAGAAGACATCGCCAACATATACCCCCCCTCCCTACCTAGACTCAGATCAGATCACCTGCCCATCGACGAGCACAAGAGCGATCCATTCCTGGTTTGAATCGAGCTTGGTTTGTTTGGTTGGTTGGTTTCTTGGAGTGGATGATGGCGAGGTGGTGCGTGGGGTGGCCGGCGGCGGCGAGGGGTGGTCGGGATGAGCTGACGTGGCAGGCGGAGCTGACGGCGCACGCGGCGGGGGAGTTCTCCATGGCGGCGGCGCAGGCCAACGCGGTGATGGAGGACCAGGCGCAGGTCATGGCGTCGCCCGGCGCCACGCTCGTCGGCGTCTATGATGGCCATGGCGGCCCCGACGCCTCCCGCTTCCTCCGCTCCCGCCTATTCCCTCTCATCCATGGTGCGTGCGCTCGCCGGCGCGCGGCGGAGCTCGATCTTGTGGTTTGATTTGAATACGTTGGCAAGAATCTTTAGCTGATTTTGTTGGCGCCAAAAATTGATGAGCAGAGTTCGCGGCGGAGCGCGGCGGCGCGGTGGACGCCGACGTGATCCGGAAGGCGTTCCTGGCGGCCGACGAGGAGTACCTCCAGCTGCTGCGGTGGTCGCTGCCGAACATGTCCCGCGCGGCCGCCTCGGGCTCCTGCTGCCTCCTGG]
[+] EMBL CB668518 [CCTTTTTTTTTTTAAGATAAGACCGAGGAACACCGTGTTGGACTTATTGGCAACAAGTCCACAAAGTCAAAAGTCAAAGCTCATCCTCCCCATGCTGTTGCAGTCTTTGCCACATATATGAAGCCAAGCAGGTCAGTCACGGGCTTCACGTCGCCTCGCCGGAGAAGAAGACATCGCCAACATATACCCCCCCTCCCTACCTAGACTCAGATCAGATCACCTGCCCATCGACGAGCACAAGAGCGATCCATTCCTGGTTTGAATCGAGCTTGGTTTGTTTGGTTGGTTGGTTTCTTGGAGTGGATGATGGCGAGGTGGTGCGTGGGGTGGCCGGCGGCGGCGAGGGGTGGTCGGGATGAGCTGACGTGGCAGGCGGAGCTGACGGCGCACGCGGCGGGGGAGTTCTCCATGGCGGCGGCGCAGGCCAACGCGGTGATGGAGGACCAGGCGCAGGTCATGGCGTCGCCCGGCGCCACGCTCGTCGGCGTCTATGATGGCCATGGCGGCCCCGACGCCTCCCGCTTCCTCCGCTCCCGCCTATTCCCTCTCATCCATGGTGCGTGCGCTCGCCGGCGCGCGGCGGAGCTCGATCTTGTGGTTTGATTTGAATACGTTGGCAAGAATCTTTAGCTGATTTTGTTGGCGCCAAAAATTGATGAGCAGAGTTCGCGGCGGAGCGCGGCGGCGCGGTGGACGCCGACGTGATCCGGAAGGCGTTCCTGGCGGCCGACGAGGAGTACCTCCAGCTGCTGCGGTGGTCGCTGCCGAACATGTCCCGCGCGGCCGCCTCGGGCTCCTGCTGCCTCCTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3928#0 ------------------------------------------------------------
consensus_3928#1 CCTTTTTTTTTTTAAGATAAGACCGAGGAACACCGTGTTGGACTTATTGGCAACAAGTCC 60
consensus_3928#0 ------------------------------------------------------------
consensus_3928#1 ACAAAGTCAAAAGTCAAAGCTCATCCTCCCCATGCTGTTGCAGTCTTTGCCACATATATG 120
consensus_3928#0 -----------------------------------TCGCCGGAGAAGAAGACATCGCCAA 25
consensus_3928#1 AAGCCAAGCAGGTCAGTCACGGGCTTCACGTCGCCTCGCCGGAGAAGAAGACATCGCCAA 180
*************************
consensus_3928#0 CATATACCCCCCCTCCCTACCTAGACTCAGATCAGATCACCTGCCCATCGACGAGCACAA 85
consensus_3928#1 CATATACCCCCCCTCCCTACCTAGACTCAGATCAGATCACCTGCCCATCGACGAGCACAA 240
************************************************************
consensus_3928#0 GAGCGATCCATTCCTGGTTTGAATCGAGCTTGGTTTGTTTGGTTGGTTGGTTTCTTGGAG 145
consensus_3928#1 GAGCGATCCATTCCTGGTTTGAATCGAGCTTGGTTTGTTTGGTTGGTTGGTTTCTTGGAG 300
************************************************************
consensus_3928#0 TGGATGATGGCGAGGTGGTGCGTGGGGTGGCCGGCGGCGGCGAGGGGTGGTCGGGATGAG 205
consensus_3928#1 TGGATGATGGCGAGGTGGTGCGTGGGGTGGCCGGCGGCGGCGAGGGGTGGTCGGGATGAG 360
************************************************************
consensus_3928#0 CTGACGTGGCAGGCGGAGCTGACGGCGCACGCGGCGGGGGAGTTCTCCATGGCGGCGGCG 265
consensus_3928#1 CTGACGTGGCAGGCGGAGCTGACGGCGCACGCGGCGGGGGAGTTCTCCATGGCGGCGGCG 420
************************************************************
consensus_3928#0 CAGGCCAACGCGGTGATGGAGGACCAGGCGCAGGTCATGGCGTCGCCCGGCGCCACGCTC 325
consensus_3928#1 CAGGCCAACGCGGTGATGGAGGACCAGGCGCAGGTCATGGCGTCGCCCGGCGCCACGCTC 480
************************************************************
consensus_3928#0 GTCGGCGTCTATGATGGCCATGGCGGCCCCGACGCCTCCCGCTTCCTCCGCTCCCGCCTA 385
consensus_3928#1 GTCGGCGTCTATGATGGCCATGGCGGCCCCGACGCCTCCCGCTTCCTCCGCTCCCGCCTA 540
************************************************************
consensus_3928#0 TTCCCTCTCATCCATGAGTTCGCGGCGGAGCGCGGCGGCGCGGTGGACGCCGACGTGATC 445
consensus_3928#1 TTCCCTCTCATCCATGG---TGCGTGCGCTCGCCGGCGCGCGGCGGAGCTCGATCTTGT- 596
**************** *** * *** * ****** *** *** * *
consensus_3928#0 CGGAAGGCGTTCCTGGCGGCCGACGAGGAGTACCTCCAGCTGCTGCGGTGGTCGCTGCCG 505
consensus_3928#1 -----GGTTTGATTTGAATACGTTGGCAAGAATCTTTAGCTGATTTTGTTGGCGCCA--A 649
** * * * ** * ** * ** ***** * ** * ***
consensus_3928#0 AACATGTCCCGCGCGGC-CGCCTCGGGCTCCTGCTGCCTCCTGGGCGCCATCTCCGGCGA 564
consensus_3928#1 AAATTGATGAGCAGAGTTCGCGGCGGAGCGCGGCGGCGCGGTGGACGCCGAC----GTGA 705
** ** ** * *** *** * ** ** *** **** * * **
consensus_3928#0 CACGCTCTACGTCGCCAACG-CCGGCGACTCCCGCGCTGTCCTCGGCCGCCGCG-CGGCG 622
consensus_3928#1 TCCGGAAGGCGTTCCTGGCGGCCGACGA-----GGAGTACCTCCAGCTGCTGCGGTGGTC 760
** *** * ** *** *** * * * * ** ** *** **
consensus_3928#0 GCCGGCCAGACCGTCGCCGAGCGGCTCTCCACCGAGCACAACGTGGCCTCGGAGGAGGTC 682
consensus_3928#1 GCTGCCGAACATGTC-CCGCGCGGCCGCCT--CGGGCTCC-TGCTGCCTCCTGG------ 810
** * * * *** *** ***** * ** ** * * ***** *
consensus_3928#0 CGGAGGGAGCTCGCCGCGCTCCACCCCGACGACGGCGAGGTCGTGGTCCACGCCCGCGGC 742
consensus_3928#1 ------------------------------------------------------------
consensus_3928#0 GCGTGGAGGGTGAAGGGGATCATCCAGGTGGCGCGCGCCATCGGCGACGTGTACCTCAAG 802
consensus_3928#1 ------------------------------------------------------------
consensus_3928#0 ACGCCGGAGTTCAAGCGCGACCCGGCGGTGCAGCGGTTATGCAGCGCCGCCGCCGCCGTC 862
consensus_3928#1 ------------------------------------------------------------
consensus_3928#0 GAGCTGGCGCGGCCGGTGGTCACCGCCGAGCCGTCCATCCACGCCCGGAAGCTCAAGGCG 922
consensus_3928#1 ------------------------------------------------------------
consensus_3928#0 GGCGTCGACCTGTTCGTCGTGTTCGCCTCCGACGGCCTATGGGAGCACCTCTCCGACGAG 982
consensus_3928#1 ------------------------------------------------------------
consensus_3928#0 GCGGCGGTGCAGCTGGTGTCCAAGAGCTCGACGAGGAGAGGCGTGGCGGCGAGGCTGGTG 1042
consensus_3928#1 ------------------------------------------------------------
consensus_3928#0 CAGGCAGCGCTCGGGGAGGCGGCGAGGAAGCGGGAGGTGAGGCGCGGCGACCTGCGGCGG 1102
consensus_3928#1 ------------------------------------------------------------
consensus_3928#0 ATCGAGCGAGGGGTGAGGCGCCACTTCCACGACGACATCACCGCCGTCGTCGTCTTCCTC 1162
consensus_3928#1 ------------------------------------------------------------
consensus_3928#0 GACCTCGACGACGACGGCGGCCGCCGCGCGCGCCGCCGTGGCAGGGTCGTCGACTCCAGC 1222
consensus_3928#1 ------------------------------------------------------------
consensus_3928#0 AGCAGCAGAAGCGGCA 1238
consensus_3928#1 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||