cluster # 3931

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Oryza sativa
cluster # 3931 cluster # 3931 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3931#0 length = 1939 sequences # 2

consensus_3931#1 length = 198 sequences # 1

consensusID : consensus_3931#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1939
fasta sequence

                              [CCCAAATCCCCCAACTCCGGCACCGGAAATGCGGCGCGGCGGCGGCGGAGGGGGCAGGCGCCTCCCGAAGTCCTCCCTGGCGCCCTCGGCGGCGTCGGATCGCACCCCGCTGCTGGATCCCCACGTCCTCCACCCGCGCAACCTCGACCTCGCCTTCTCCCGCCGCGACTCCGACGCCGCCAGCCTCTGCAGCAGCCGGCCGTCCTCCATCGGCACGGGCCCTTCGTTCGCCGCCCCCGTCACCAACTTCTCCGACAGGGCCTCCCAGGCGGCCGCCCTCCGCGTCGTCAACGCCTACCTCGCCCCCGCCGTCAGCCTCCGCCCGCCTCTCCCCTCCGCCAAGGACATCGTCGCCGCCTTCCGCTGCCCCTTCAAGCTCACCCGCTCCGCCCTCAAGGCCCCCGGCACCCCGCACTCCTGGCCGCCGCTCCTCTCCGTCCTCTACTGGCTCACCCTCCTCGTCAACTCCAGTGAGAGCGGCGCCGGCGGCGACGACTCTCCTGCCGCCTCAAATGACCTCATGCTCTACATTACCAACAGCTACTCGCTGTTCATCTCTGGGGACGATGATTCGGTCGCGTCTCTCGACGAGGAGTACTCCTCCAAAGCCCGTGCACATGCGCAGGCAGCCGTCGAGGCCTCACAGGCGCTGGAGAAGGAGGCACTGGATCTGGAGTCCAAGAGGACTAAGCTCACCTCAGGACCCTCGCGGCTGGAGGCACTGCAGGCAGAGAAGGAGGCCCTCACTGCCGACGTGGAGAAATTTGAAGCGGTTGTGAAGAGTTGGACAGTGAAGATACAGGAGAAGGAAGAGTCATCTGTACATTTGGAGAAGGAATTGGAGGCCAAGCTGATGGATCAACAGCGGATAGCAGCTGAAAACGAGGAGCTGATGAAGAAGGTGGACGCACAGGTTGTGAATGTGAGAGATGTCGATCGGATGCAGAGGGAGATCCAGTCAGTGGAGCGTGACAATGTCAAGTTGGAGAATGGGAATGCGACATTGGAGGAGAAGGGTTGGGAGCTCGAAGCTGCGGTGGTTGGGAAGCTTGAGGAGATTGAGGGACTTGTGGAGCAGTGCAACCAGGCCCTCAGAAAATTGAAACCTGGTATTGATTTCCAGTACATGCTAAACACAAAAGCGTCCTCCCCGGTTGAACTGCTAGGAACCAGTTACAAAACTATTATGAAACCTGCACTCAATTCTCTTGCTGACGAGGCTAGAAGGATATCCATCTTAAAGCATGATGAGTCAGTTGAGCTAGAAAAACAGTCACAACGAAATGCTAAAATTCTGTCTGAGAAAAAGAACCATATTTCAGTTTGTCAGACCAAAACTGATGAGATGGTTGCTCGATTGGATTCACTGGATGTTGAAATTGGGAATCATGTTTCAAGATGTAAGGCTGATGCTAGACTAATGAAAGATGAGCTGGAGAAAAAGGATCACCACCTGAGTACTGTTGAGAAGGAGTCAGAAGAATTTTTAAAGATCTCCGAAAAGAAGCTTGAAGATGCAAAAAGGGAAACTGATGAAGAAATTCAGATGTGCGCCAGAGAACTGCTGAAACTTATTGATTCGGTTACAGAGTACAAAGAGTTCATGGAAACATCAATATCTGGGATGAGGAAAGACCTTTATGAAACCGTCGACGACATCTCTTCTTTGGCATCCAAGGCAGCATCTACCCGCCAAACTTCTGCTCAGTTTGTAATGTGATTATGTGAAGAAAGCTCTTCACGGAAGTGTTAGCTCCCAAGTGATCTCTTCCTTCCTACGCCTGAGATATTTATACCTCTTGGAGCTCTTGTACGCATGTGCCATCCTGTTAATATAAACTAGGTGAGTATTCCTTAGATTGCAATGGAAATAGGATATTATTTGCTTTCCAACTCTTGTGCATGTTGATTAAAATAGAAATGTTTTTGTTGGGCCTGC]

[+] EMBL AK063363             [CCCAAATCCCCCAACTCCGGCACCGGAAATGCGGCGCGGCGGCGGCGGAGGGGGCAGGCGCCTCCCGAAGTCCTCCCTGGCGCCCTCGGCGGCGTCGGATCGCACCCCGCTGCTGGATCCCCACGTCCTCCACCCGCGCAACCTCGACCTCGCCTTCTCCCGCCGCGACTCCGACGCCGCCAGCCTCTGCAGCAGCCGGCCGTCCTCCATCGGCACGGGCCCTTCGTTCGCCGCCCCCGTCACCAACTTCTCCGACAGGGCCTCCCAGGCGGCCGCCCTCCGCGTCGTCAACGCCTACCTCGCCCCCGCCGTCAGCCTCCGCCCGCCTCTCCCCTCCGCCAAGGACATCGTCGCCGCCTTCCGCTGCCCCTTCAAGCTCACCCGCTCCGCCCTCAAGGCCCCCGGCACCCCGCACTCCTGGCCGCCGCTCCTCTCCGTCCTCTACTGGCTCACCCTCCTCGTCAACTCCAGTGAGAGCGGCGCCGGCGGCGACGACTCTCCTGCCGCCTCAAATGACCTCATGCTCTACATTACCAACAGCTACTCGCTGTTCATCTCTGGGGACGATGATTCGGTCGCGTCTCTCGACGAGGAGTACTCCTCCAAAGCCCGTGCACATGCGCAGGCAGCCGTCGAGGCCTCACAGGCGCTGGAGAAGGAGGCACTGGATCTGGAGTCCAAGAGGACTAAGCTCACCTCAGGACCCTCGCGGCTGGAGGCACTGCAGGCAGAGAAGGAGGCCCTCACTGCCGACGTGGAGAAATTTGAAGCGGTTGTGAAGAGTTGGACAGTGAAGATACAGGAGAAGGAAGAGTCATCTGTACATTTGGAGAAGGAATTGGAGGCCAAGCTGATGGATCAACAGCGGATAGCAGCTGAAAACGAGGAGCTGATGAAGAAGGTGGACGCACAGGTTGTGAATGTGAGAGATGTCGATCGGATGCAGAGGGAGATCCAGTCAGTGGAGCGTGACAATGTCAAGTTGGAGAATGGGAATGCGACATTGGAGGAGAAGGGTTGGGAGCTCGAAGCTGCGGTGGTTGGGAAGCTTGAGGAGATTGAGGGACTTGTGGAGCAGTGCAACCAGGCCCTCAGAAAATTGAAACCTGGTATTGATTTCCAGTACATGCTAAACACAAAAGCGTCCTCCCCGGTTGAACTGCTAGGAACCAGTTACAAAACTATTATGAAACCTGCACTCAATTCTCTTGCTGACGAGGCTAGAAGGATATCCATCTTAAAGCATGATGAGTCAGTTGAGCTAGAAAAACAGTCACAACGAAATGCTAAAATTCTGTCTGAGAAAAAGAACCATATTTCAGTTTGTCAGACCAAAACTGATGAGATGGTTGCTCGATTGGATTCACTGGATGTTGAAATTGGGAATCATGTTTCAAGATGTAAGGCTGATGCTAGACTAATGAAAGATGAGCTGGAGAAAAAGGATCACCACCTGAGTACTGTTGAGAAGGAGTCAGAAGAATTTTTAAAGATCTCCGAAAAGAAGCTTGAAGATGCAAAAAGGGAAACTGATGAAGAAATTCAGATGTGCGCCAGAGAACTGCTGAAACTTATTGATTCGGTTACAGAGTACAAAGAGTTCATGGAAACATCAATATCTGGGATGAGGAAAGACCTTTATGAAACCGTCGACGACATCTCTTCTTTGGCATCCAAGGCAGCATCTACCCGCCAAACTTCTGCTCAGTTTGTAATGTGATTATGTGAAGAAAGCTCTTCACGGAAGTGTTAGCTCCCAAGTGATCTCTTCCTTCCTACGCCTGAGATATTTATACCTCTTGGAGCTCTTGTACGCATGTGCCATCCTGTTAATATAAACTAGGTG                                                                                             ]
[+] EMBL AU100801             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACAAAGAGTTCATGGAAACATCAATATCTGGGATGAGG AAGACCTTTATGAAACCGTCGACGACATCTCTTCTTTGGCATCCAAGGCAGCATCTACCCGCCAAACTTCTGCTCAGTTTGTAATGTGATTATGTGAAGAAAGCTCTTCACGGAAGTGTTAGCTCCCAAGTGATCTCTTCCTTCCTACGCCTGAGATATTTATACCTCTTGGAGCTCTTGTACGCATGTGCCATCCTGTTAATATAAACTAGGTGAGTATTCCTTAGATTGCAATGGAAATAGGATATTATTTGCTTTCCAACTCTTGTGCATGTTGATTAAAATAGAAATGTTTTTGTTGGGCCTGC]




>consensus_3931#0
CCCAAATCCCCCAACTCCGGCACCGGAAATGCGGCGCGGCGGCGGCGGAGGGGGCAGGCG
CCTCCCGAAGTCCTCCCTGGCGCCCTCGGCGGCGTCGGATCGCACCCCGCTGCTGGATCC
CCACGTCCTCCACCCGCGCAACCTCGACCTCGCCTTCTCCCGCCGCGACTCCGACGCCGC
CAGCCTCTGCAGCAGCCGGCCGTCCTCCATCGGCACGGGCCCTTCGTTCGCCGCCCCCGT
CACCAACTTCTCCGACAGGGCCTCCCAGGCGGCCGCCCTCCGCGTCGTCAACGCCTACCT
CGCCCCCGCCGTCAGCCTCCGCCCGCCTCTCCCCTCCGCCAAGGACATCGTCGCCGCCTT
CCGCTGCCCCTTCAAGCTCACCCGCTCCGCCCTCAAGGCCCCCGGCACCCCGCACTCCTG
GCCGCCGCTCCTCTCCGTCCTCTACTGGCTCACCCTCCTCGTCAACTCCAGTGAGAGCGG
CGCCGGCGGCGACGACTCTCCTGCCGCCTCAAATGACCTCATGCTCTACATTACCAACAG
CTACTCGCTGTTCATCTCTGGGGACGATGATTCGGTCGCGTCTCTCGACGAGGAGTACTC
CTCCAAAGCCCGTGCACATGCGCAGGCAGCCGTCGAGGCCTCACAGGCGCTGGAGAAGGA
GGCACTGGATCTGGAGTCCAAGAGGACTAAGCTCACCTCAGGACCCTCGCGGCTGGAGGC
ACTGCAGGCAGAGAAGGAGGCCCTCACTGCCGACGTGGAGAAATTTGAAGCGGTTGTGAA
GAGTTGGACAGTGAAGATACAGGAGAAGGAAGAGTCATCTGTACATTTGGAGAAGGAATT
GGAGGCCAAGCTGATGGATCAACAGCGGATAGCAGCTGAAAACGAGGAGCTGATGAAGAA
GGTGGACGCACAGGTTGTGAATGTGAGAGATGTCGATCGGATGCAGAGGGAGATCCAGTC
AGTGGAGCGTGACAATGTCAAGTTGGAGAATGGGAATGCGACATTGGAGGAGAAGGGTTG
GGAGCTCGAAGCTGCGGTGGTTGGGAAGCTTGAGGAGATTGAGGGACTTGTGGAGCAGTG
CAACCAGGCCCTCAGAAAATTGAAACCTGGTATTGATTTCCAGTACATGCTAAACACAAA
AGCGTCCTCCCCGGTTGAACTGCTAGGAACCAGTTACAAAACTATTATGAAACCTGCACT
CAATTCTCTTGCTGACGAGGCTAGAAGGATATCCATCTTAAAGCATGATGAGTCAGTTGA
GCTAGAAAAACAGTCACAACGAAATGCTAAAATTCTGTCTGAGAAAAAGAACCATATTTC
AGTTTGTCAGACCAAAACTGATGAGATGGTTGCTCGATTGGATTCACTGGATGTTGAAAT
TGGGAATCATGTTTCAAGATGTAAGGCTGATGCTAGACTAATGAAAGATGAGCTGGAGAA
AAAGGATCACCACCTGAGTACTGTTGAGAAGGAGTCAGAAGAATTTTTAAAGATCTCCGA
AAAGAAGCTTGAAGATGCAAAAAGGGAAACTGATGAAGAAATTCAGATGTGCGCCAGAGA
ACTGCTGAAACTTATTGATTCGGTTACAGAGTACAAAGAGTTCATGGAAACATCAATATC
TGGGATGAGGAAAGACCTTTATGAAACCGTCGACGACATCTCTTCTTTGGCATCCAAGGC
AGCATCTACCCGCCAAACTTCTGCTCAGTTTGTAATGTGATTATGTGAAGAAAGCTCTTC
ACGGAAGTGTTAGCTCCCAAGTGATCTCTTCCTTCCTACGCCTGAGATATTTATACCTCT
TGGAGCTCTTGTACGCATGTGCCATCCTGTTAATATAAACTAGGTGAGTATTCCTTAGAT
TGCAATGGAAATAGGATATTATTTGCTTTCCAACTCTTGTGCATGTTGATTAAAATAGAA
ATGTTTTTGTTGGGCCTGC

consensusID : consensus_3931#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 198
fasta sequence

                              [TCGTCAACGCCTACCTCGCCCCCGCCGTCAGCCTCCGCCCGCCTCTCCCCTCCGCCAAGGACATCGTCGCCGCCTTCCGCCACCTCTTCGAGTGCCTCGACTTCCCCCTCCANGGCGCGTTCGAGGACGACCTCCTCTTCGTCCTCCGCGTCCTCCGCTGCCCCTTCAAGCTCACCCGCTCCGCCCTCAAGGCCCCCG]

[+] EMBL AU100802             [TCGTCAACGCCTACCTCGCCCCCGCCGTCAGCCTCCGCCCGCCTCTCCCCTCCGCCAAGGACATCGTCGCCGCCTTCCGCCACCTCTTCGAGTGCCTCGACTTCCCCCTCCANGGCGCGTTCGAGGACGACCTCCTCTTCGTCCTCCGCGTCCTCCGCTGCCCCTTCAAGCTCACCCGCTCCGCCCTCAAGGCCCCCG]




>consensus_3931#1
TCGTCAACGCCTACCTCGCCCCCGCCGTCAGCCTCCGCCCGCCTCTCCCCTCCGCCAAGG
ACATCGTCGCCGCCTTCCGCCACCTCTTCGAGTGCCTCGACTTCCCCCTCCANGGCGCGT
TCGAGGACGACCTCCTCTTCGTCCTCCGCGTCCTCCGCTGCCCCTTCAAGCTCACCCGCT
CCGCCCTCAAGGCCCCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3931#0      CCCAAATCCCCCAACTCCGGCACCGGAAATGCGGCGCGGCGGCGGCGGAGGGGGCAGGCG 60
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      CCTCCCGAAGTCCTCCCTGGCGCCCTCGGCGGCGTCGGATCGCACCCCGCTGCTGGATCC 120
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      CCACGTCCTCCACCCGCGCAACCTCGACCTCGCCTTCTCCCGCCGCGACTCCGACGCCGC 180
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      CAGCCTCTGCAGCAGCCGGCCGTCCTCCATCGGCACGGGCCCTTCGTTCGCCGCCCCCGT 240
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      CACCAACTTCTCCGACAGGGCCTCCCAGGCGGCCGCCCTCCGCGTCGTCAACGCCTACCT 300
consensus_3931#1      --------------------------------------------TCGTCAACGCCTACCT 16
                                                                  ****************

consensus_3931#0      CGCCCCCGCCGTCAGCCTCCGCCCGCCTCTCCCCTCCGCCAAGGACATCGTCGCCGCCTT 360
consensus_3931#1      CGCCCCCGCCGTCAGCCTCCGCCCGCCTCTCCCCTCCGCCAAGGACATCGTCGCCGCCTT 76
                      ************************************************************

consensus_3931#0      CCGCTGCCCCTTCAAGCTCACCCGCTCCGCCCTC-AAGGCCCCCGGCACCCCGCACTCCT 419
consensus_3931#1      CCGCCACCTCTTCGAGTGCCTCGACTTCCCCCTCCANGGCGCGTTCGAGGACGACCTCCT 136
                      ****  ** **** **  *  *  ** * ***** * *** *     *   **  *****

consensus_3931#0      GGCCGCCGCTCCTCTCCGTCCTCTACTGGCTCACCCTCCTCGTCAACTCCAGTGAGAGCG 479
consensus_3931#1      CTTCG----TCCTCCGCGTCCTCCGCTGCCCCTTCAAGCTCACCCGCTCCGCCCTCAAGG 192
                         **    *****  *******  *** * *  *   ***  *  ****      *  *

consensus_3931#0      GCGCCGGCGGCGACGACTCTCCTGCCGCCTCAAATGACCTCATGCTCTACATTACCAACA 539
consensus_3931#1      CCCCCG------------------------------------------------------ 198
                       * ***                                                      

consensus_3931#0      GCTACTCGCTGTTCATCTCTGGGGACGATGATTCGGTCGCGTCTCTCGACGAGGAGTACT 599
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      CCTCCAAAGCCCGTGCACATGCGCAGGCAGCCGTCGAGGCCTCACAGGCGCTGGAGAAGG 659
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      AGGCACTGGATCTGGAGTCCAAGAGGACTAAGCTCACCTCAGGACCCTCGCGGCTGGAGG 719
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      CACTGCAGGCAGAGAAGGAGGCCCTCACTGCCGACGTGGAGAAATTTGAAGCGGTTGTGA 779
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      AGAGTTGGACAGTGAAGATACAGGAGAAGGAAGAGTCATCTGTACATTTGGAGAAGGAAT 839
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      TGGAGGCCAAGCTGATGGATCAACAGCGGATAGCAGCTGAAAACGAGGAGCTGATGAAGA 899
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      AGGTGGACGCACAGGTTGTGAATGTGAGAGATGTCGATCGGATGCAGAGGGAGATCCAGT 959
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      CAGTGGAGCGTGACAATGTCAAGTTGGAGAATGGGAATGCGACATTGGAGGAGAAGGGTT 1019
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      GGGAGCTCGAAGCTGCGGTGGTTGGGAAGCTTGAGGAGATTGAGGGACTTGTGGAGCAGT 1079
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      GCAACCAGGCCCTCAGAAAATTGAAACCTGGTATTGATTTCCAGTACATGCTAAACACAA 1139
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      AAGCGTCCTCCCCGGTTGAACTGCTAGGAACCAGTTACAAAACTATTATGAAACCTGCAC 1199
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      TCAATTCTCTTGCTGACGAGGCTAGAAGGATATCCATCTTAAAGCATGATGAGTCAGTTG 1259
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      AGCTAGAAAAACAGTCACAACGAAATGCTAAAATTCTGTCTGAGAAAAAGAACCATATTT 1319
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      CAGTTTGTCAGACCAAAACTGATGAGATGGTTGCTCGATTGGATTCACTGGATGTTGAAA 1379
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      TTGGGAATCATGTTTCAAGATGTAAGGCTGATGCTAGACTAATGAAAGATGAGCTGGAGA 1439
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      AAAAGGATCACCACCTGAGTACTGTTGAGAAGGAGTCAGAAGAATTTTTAAAGATCTCCG 1499
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      AAAAGAAGCTTGAAGATGCAAAAAGGGAAACTGATGAAGAAATTCAGATGTGCGCCAGAG 1559
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      AACTGCTGAAACTTATTGATTCGGTTACAGAGTACAAAGAGTTCATGGAAACATCAATAT 1619
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      CTGGGATGAGGAAAGACCTTTATGAAACCGTCGACGACATCTCTTCTTTGGCATCCAAGG 1679
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      CAGCATCTACCCGCCAAACTTCTGCTCAGTTTGTAATGTGATTATGTGAAGAAAGCTCTT 1739
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      CACGGAAGTGTTAGCTCCCAAGTGATCTCTTCCTTCCTACGCCTGAGATATTTATACCTC 1799
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      TTGGAGCTCTTGTACGCATGTGCCATCCTGTTAATATAAACTAGGTGAGTATTCCTTAGA 1859
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      TTGCAATGGAAATAGGATATTATTTGCTTTCCAACTCTTGTGCATGTTGATTAAAATAGA 1919
consensus_3931#1      ------------------------------------------------------------
                                                                                  

consensus_3931#0      AATGTTTTTGTTGGGCCTGC 1939
consensus_3931#1      --------------------