These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1626 fasta sequence [CCGGCGAGAGACGAGAGACGGCGCCACCACCGCCGCCGCCGCCGCCGTGCTGGACTCCGGCTGGCCACCGCGCTCCGCTCGAGGCGTCCGCGATGGCGTCCCCAGAGCCGTGCGCCGCCGCCGCCGCACCGGGAAGCGGGTTCGGAGCCGTGGACGGCGTCCTGCCCCCGGAGCTGCTGCTCGAGGTCCTGCTGCGCCTCCCCGCCAAGCCGATCTGCCGCCTCCGCGCCGTCTGCCGCTCGTGGCTGTCCTTCACCACGGACCGGCTCTTCCTCGCCGCCTACGCCGCCGTCCACCCTCACCCGCTCCTCGCCGTCTTGGTTGACAGCTTCCCCAGTCGATGCTGCGTTGATCTCGTGGACCTGTCCGGCAACGTCGTCGAGGAGATCCTCGGCGTGGGCGGCGAGTGCAGGGTGCTGACGGCGAGCTACGACCGTGTCCTCGTCGCCGGGGAGCACCACCGCGTCAGCGTGCTCGACCCCGCCACAGGATCCGTCTCCGCCTTGCCCTTCGGCATTGCAGAGGATATGGTGCGTCGCAACGGGATGAGGCCAGCCTGGTTTGCATTTGGTCAGACGAATTCCACAGGAGAGTACAAACTACTCCGGATTCTAGAGGACTTGGAGGATGGATATGAGGCTGATCCAGTGTGTGAGGTTTTCGCAATCGGCGACATGAATGGACGGTGGAGGAAGATGGAGAGTCCACCGGGGTATCTTGATCCGAGCTGCACCAATGGAGTTGTCTTCGAAGGGGCTGCTTACTTCTTCTTGGATCACTGGCAAATGGATCCCTCCTACTATTTTGCTACGGGCTGCATACCTTCCTTCGACCTTGCGACGGAGCAGTGGAGCACGGCTCTCCAAGGGCCAGTAAACAGAATTCTTGAGGAAGCGAATGGCACACTCAACTATGCTGACCTTACCGATCGTCTTATGTTAGCCCAACTTGAAGGAACTTTGTGTACAGCACATTTCAATGATCAAATTTCTGCGGTGGACTTATGGTTTCTAGTTGATTTTGAGAATGGTATGTGGTCCAAAGAATATAGGATAAATGTTGAATTTGCTTTTGATGGTTTTGGAGATGGTGTGCAACCTTTGCTTGTGACGGATGAGGGAAATGTGGTACTTTGGGTGCAGATAGGATCAAAAGGGATGGTCTGGATTTATAATCCAGTAACCAACACTTCCTCAGAGATAGTTCAGACAAAGGCTAGTATCTTTACTGGAGTAGGTGTATATACTGGAAATCAATTATGTCCACAGAGTATGTGACAAGAAATGGAAGAAGTGCCAAAAGAAGAGGAGCAAAACCGATGTCAGGACTGGTGTGATTGCATACTGGAGAATTTGAGGCCGCTCCTGAAAACTATAACACTCTTGGACAGGCTACTGTCGTGCAAGCTACTGGGGTGTTATTTTTCTTGGTTCTGCAGATGGTTCAGTTATGCAGCTAGTGAATAGTTTTTGGACCTGTGGGTTGTTCCATGGTATTTTCTACCTAAAACTGGAATCCACAGTATGCTGCTTTTAATTATTGTTTGTGAATCTCTAAAGAAATCCCTGTCCCCGTGTTGGCTTTCTTTCAAAGACGGATCATAATGATATCGGTTCCAAAAAAATG] [+] EMBL AK063340 [CCGGCGAGAGACGAGAGACGGCGCCACCACCGCCGCCGCCGCCGCCGTGCTGGACTCCGGCTGGCCACCGCGCTCCGCTCGAGGCGTCCGCGATGGCGTCCCCAGAGCCGTGCGCCGCCGCCGCCGCACCGGGAAGCGGGTTCGGAGCCGTGGACGGCGTCCTGCCCCCGGAGCTGCTGCTCGAGGTCCTGCTGCGCCTCCCCGCCAAGCCGATCTGCCGCCTCCGCGCCGTCTGCCGCTCGTGGCTGTCCTTCACCACGGACCGGCTCTTCCTCGCCGCCTACGCCGCCGTCCACCCTCACCCGCTCCTCGCCGTCTTGGTTGACAGCTTCCCCAGTCGATGCTGCGTTGATCTCGTGGACCTGTCCGGCAACGTCGTCGAGGAGATCCTCGGCGTGGGCGGCGAGTGCAGGGTGCTGACGGCGAGCTACGACCGTGTCCTCGTCGCCGGGGAGCACCACCGCGTCAGCGTGCTCGACCCCGCCACAGGATCCGTCTCCGCCTTGCCCTTCGGCATTGCAGAGGATATGGTGCGTCGCAACGGGATGAGGCCAGCCTGGTTTGCATTTGGTCAGACGAATTCCACAGGAGAGTACAAACTACTCCGGATTCTAGAGGACTTGGAGGATGGATATGAGGCTGATCCAGTGTGTGAGGTTTTCGCAATCGGCGACATGAATGGACGGTGGAGGAAGATGGAGAGTCCACCGGGGTATCTTGATCCGAGCTGCACCAATGGAGTTGTCTTCGAAGGGGCTGCTTACTTCTTCTTGGATCACTGGCAAATGGATCCCTCCTACTATTTTGCTACGGGCTGCATACCTTCCTTCGACCTTGCGACGGAGCAGTGGAGCACGGCTCTCCAAGGGCCAGTAAACAGAATTCTTGAGGAAGCGAATGGCACACTCAACTATGCTGACCTTACCGATCGTCTTATGTTAGCCCAACTTGAAGGAACTTTGTGTACAGCACATTTCAATGATCAAATTTCTGCGGTGGACTTATGGTTTCTAGTTGATTTTGAGAATGGTATGTGGTCCAAAGAATATAGGATAAATGTTGAATTTGCTTTTGATGGTTTTGGAGATGGTGTGCAACCTTTGCTTGTGACGGATGAGGGAAATGTGGTACTTTGGGTGCAGATAGGATCAAAAGGGATGGTCTGGATTTATAATCCAGTAACCAACACTTCCTCAGAGATAGTTCAGACAAAGGCTAGTATCTTTACTGGAGTAGGTGTATATACTGGAAATCAATTATGTCCACAGAGTATGTGACAAGAAATGGAAGAAGTGCCAAAAGAAGAGGAGCAAAACCGATGTCAGGACTGGTGTGATTGCATACTGGAGAATTTGAGGCCGCTCCTGAAAACTATAACACTCTTGGACAGGCTACTGTCGTGCAAGCTACTGGGGTGTTATTTTTCTTGGTTCTGCAGATGGTTCAGTTATGCAGCTAGTGAATAGTTTTTGGACCTGTGGGTTGTTCCATGGTATTTTCTACCTAAAACTGGAATCCACAGTATGCTGCTTTTAATTATTGTTTGTGAATCTCTAAAGAAATCCCTGTCCCCGTGTTGGCTTTCTTTCAAAGACGGATCATAATGATATCGGTTCCAAAAAAATG] consensusID : consensus_3932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 848 fasta sequence [TCCGGCGAGAGCCGCCGCCGCCGACGTGCCGGACTCCGGCCGCACCACCGGCCACCGCGCTAGCTCCGCTTCAGGTAAATCCCCTGAGCAGAGAAGATGGGTTGAAATCTCATCCGTTTTTTTTTGATTTGAGGTCTCCTACCTCCGGCGATGGAGTCGGCGGCGGCGGCGGCGGGGTGGGGGCTCGGAGCCGTGGACGGCGTCCTGCCGCCGGAGCTGCTGCTCGACGTCCTGCTGCGCCTCCCTGCCGGGCCGATCTGCCGCCTCCGCGCCGTCTGCCGCTCGTGGCTCGCCTTCACCACCGACCCGCACTTCGTCGCCGCGCACGCCGCCCGCCACCCTGCCCCGCTCCTCGCCGTCGGCGTGCAGGGCTTCCCCAGGCTCTGCGTCGACCTCGTCGACCTCTCCGGCAACCTTGTCAAGCAGATCCTCCGCGTGGGGAAAGGCAGGGTGGTGAGCGGGAGCTCCGCCGACCGTGTCCTCGTCGCCGGCGAGGACCACAGCGTCCGCGTGCTCAACCCTACCACTGGATCCATTTCAATTTTACCTAGCCATCGCTGCGGCGGCGCAGACCCCTCAACGATTGCGGCCTGGTTTGCATTTGGTCAGACAGCTTCCACGGGGGAGTGCAAATTAGTCCGGATTTTACTGAATATTGATAACTCTCGTCACCTATCCGAGGTTATCACCATCGGCGACACGGATGGAGAGTGGAGGGAGACGGCGAACCCGCCAGGCTACCTTGGTTGGAACTGCACCAATGGAGTTGTGTTCAAAGGCGCTGCTTACTTCATCTTGGATTACTGTTTCTCTGATCCCTCCTTCTCGAGAGGGGCTGCATGCCTTCC] [+] EMBL CB642210 [TCCGGCGAGAGCCGCCGCCGCCGACGTGCCGGACTCCGGCCGCACCACCGGCCACCGCGCTAGCTCCGCTTCAGGTAAATCCCCTGAGCAGAGAAGATGGGTTGAAATCTCATCCGTTTTTTTTTGATTTGAGGTCTCCTACCTCCGGCGATGGAGTCGGCGGCGGCGGCGGCGGGGTGGGGGCTCGGAGCCGTGGACGGCGTCCTGCCGCCGGAGCTGCTGCTCGACGTCCTGCTGCGCCTCCCTGCCGGGCCGATCTGCCGCCTCCGCGCCGTCTGCCGCTCGTGGCTCGCCTTCACCACCGACCCGCACTTCGTCGCCGCGCACGCCGCCCGCCACCCTGCCCCGCTCCTCGCCGTCGGCGTGCAGGGCTTCCCCAGGCTCTGCGTCGACCTCGTCGACCTCTCCGGCAACCTTGTCAAGCAGATCCTCCGCGTGGGGAAAGGCAGGGTGGTGAGCGGGAGCTCCGCCGACCGTGTCCTCGTCGCCGGCGAGGACCACAGCGTCCGCGTGCTCAACCCTACCACTGGATCCATTTCAATTTTACCTAGCCATCGCTGCGGCGGCGCAGACCCCTCAACGATTGCGGCCTGGTTTGCATTTGGTCAGACAGCTTCCACGGGGGAGTGCAAATTAGTCCGGATTTTACTGAATATTGATAACTCTCGTCACCTATCCGAGGTTATCACCATCGGCGACACGGATGGAGAGTGGAGGGAGACGGCGAACCCGCCAGGCTACCTTGGTTGGAACTGCACCAATGGAGTTGTGTTCAAAGGCGCTGCTTACTTCATCTTGGATTACTGTTTCTCTGATCCCTCCTTCTCGAGAGGGGCTGCATGCCTTCC] consensusID : consensus_3932#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence [GGGGCTCGGNGCCGTGGNCGGNGTCCTGNCGCCGGNGCTGCTGCTCGACGTCCTGCTGCGCCTCCCTGCCGGGCCGATCTGCCGCCTCCGCGCCGTCTGCCGCTCGTGGCTCGCCTTCACCACCGACCCGCACTTCGTCGCCGCGCACGCCNCCCGNCACCCTGCCCCGCTCCTCNCCGTCGGCGTNCANGGCTTCCCCANGCTCTGCNTCGATCTCGTCGANCTCTCCNGCAACNTTGTCAAGCAAATNNTCCGNTTGGGGAAANGNNCGGTTTTTATCGGGAACTCCCCCAANNGTG] [+] EMBL AA753113 [GGGGCTCGGNGCCGTGGNCGGNGTCCTGNCGCCGGNGCTGCTGCTCGACGTCCTGCTGCGCCTCCCTGCCGGGCCGATCTGCCGCCTCCGCGCCGTCTGCCGCTCGTGGCTCGCCTTCACCACCGACCCGCACTTCGTCGCCGCGCACGCCNCCCGNCACCCTGCCCCGCTCCTCNCCGTCGGCGTNCANGGCTTCCCCANGCTCTGCNTCGATCTCGTCGANCTCTCCNGCAACNTTGTCAAGCAAATNNTCCGNTTGGGGAAANGNNCGGTTTTTATCGGGAACTCCCCCAANNGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3932#1 TCCGGCGAGAGCCGCCGCCGCCGACGTGCCGGACTCCGGCCGCACCACCGGCCACCGCGC 60 consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 ------------------------------------CCGGCGAGAGACGAGAGACGGCGC 24 consensus_3932#1 TAGCTCCGCTTCAGGTAAATCCCCTGAGCAGAGAAGATGGGTTGAAATCTCATCCGTTTT 120 consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 CACCACCGCCGCCG-----CCGCCGCCGTGCTGGACTCCGGCTG--GCCACCGCGCTCCG 77 consensus_3932#1 TTTTTGATTTGAGGTCTCCTACCTCCGGCGATGGAGTCGGCGGCGGCGGCGGCGGGGTGG 180 consensus_3932#2 -----------------------------------------------------------G 1 consensus_3932#0 CTCGAGGCGTCCGCGATGGCGTCCCCAGAGCCGTGCGCCGCCGCCGCCGCACCGGGAAGC 137 consensus_3932#1 GGGCTCGGAGCCGTGGACGGCGTCCTGCCGCCGGAGCTGCTGCTCGACGTCCTGCTGCGC 240 consensus_3932#2 GGGCTCGGNGCCGTGGNCGGNGTCCTGNCGCCGGNGCTGCTGCTCGACGTCCTGCTGCGC 61 consensus_3932#0 GGGTTCGGAGCCGTGGACGGCGTCCTGCCCCCGGAGCTGCTGCTCGAGGTCCTGCTGCGC 197 *** **** ******* *** ****** * **** ************ ************ consensus_3932#1 CTCCCTGCCGGGCCGATCTGCCGCCTCCGCGCCGTCTGCCGCTCGTGGCTCGCCTTCACC 300 consensus_3932#2 CTCCCTGCCGGGCCGATCTGCCGCCTCCGCGCCGTCTGCCGCTCGTGGCTCGCCTTCACC 121 consensus_3932#0 CTCCCCGCCAAGCCGATCTGCCGCCTCCGCGCCGTCTGCCGCTCGTGGCTGTCCTTCACC 257 ***** *** *************************************** ******** consensus_3932#1 ACCGACCCGCACTTCGTCGCCGCGCACGCCGCCCGCCACCCTGCCCCGCTCCTCGCCGTC 360 consensus_3932#2 ACCGACCCGCACTTCGTCGCCGCGCACGCCNCCCGNCACCCTGCCCCGCTCCTCNCCGTC 181 consensus_3932#0 ACGGACCGGCTCTTCCTCGCCGCCTACGCCGCCGTCCACCCTCACCCGCTCCTCGCCGTC 317 ** **** ** **** ******* ***** ** ****** ********** ***** consensus_3932#1 GGCGTGCAGGGCTTCCCCAGGCT---CTGCGTCGACCTCGTCGACCTCTCCGGCAACCTT 417 consensus_3932#2 GGCGTNCANGGCTTCCCCANGCT---CTGCNTCGATCTCGTCGANCTCTCCNGCAACNTT 238 consensus_3932#0 TTGGTTGACAGCTTCCCCAGTCGATGCTGCGTTGATCTCGTGGACCTGTCCGGCAACGTC 377 ** * ********* * **** * ** ***** ** ** *** ***** * consensus_3932#1 GTCAAGCAGATCCTCCGCGTGGGGA---AAGGCAGGGTGGTGAGCGGGAGCTCCGCCGAC 474 consensus_3932#2 GTCAAGCAAATNNTCCGNTTGGGGA---AANGNNCGGTTTTTATCGGGAACTCCCCCAAN 295 consensus_3932#0 GTCGAGGAGATCCTCGGCGTGGGCGGCGAGTGCAGGGTGCTGACGGCGAGCTA---CGAC 434 *** ** * ** ** * **** * * *** * * * ** ** * * consensus_3932#1 CGTGTCCTCGTCGCCGGCGAGGACCACAGCGTCCGCGTGCTCAACCCTACCACTGGATCC 534 consensus_3932#2 NGTG-------------------------------------------------------- 299 consensus_3932#0 CGTGTCCTCGTCGCCGGGGAGCACCACCGCGTCAGCGTGCTCGACCCCGCCACAGGATCC 494 *** consensus_3932#1 ATTTCAATTTTACC--TAGCCATCGCTGCGGCGGCGCAGACCCCTCAACGATTG----CG 588 consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 GTCTCCGCCTTGCCCTTCGGCATTGCAGAGGATATGGTGCGTCGCAACGGGATGAGGCCA 554 consensus_3932#1 GCCTGGTTTGCATTTGGTCAGACAGCTTCCACGGGGGAGTGCAAATTAGTCCGGATTTTA 648 consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 GCCTGGTTTGCATTTGGTCAGACGAATTCCACAGGAGAGTACAAACTACTCCGGATTCTA 614 consensus_3932#1 CTGAATATTGA---------TAACTCTCGTCACCTATCCGAGGTTATCACCATCGGCGAC 699 consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 GAGGACTTGGAGGATGGATATGAGGCTGATCCAGTGTGTGAGGTTTTCGCAATCGGCGAC 674 consensus_3932#1 ACGGATGGAGAGTGGAGGGAGACGGCGAACCCGCCAGGCTACCTTGGTTGGAACTGCACC 759 consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 ATGAATGGACGGTGGAGGAAGATGGAGAGTCCACCGGGGTATCTTGATCCGAGCTGCACC 734 consensus_3932#1 AATGGAGTTGTGTTCAAAGGCGCTGCTTACTTCATCTTGGATTACTGTTTCTCTGATCCC 819 consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 AATGGAGTTGTCTTCGAAGGGGCTGCTTACTTCTTCTTGGATCACTGGCAAATGGATCCC 794 consensus_3932#1 TCCT----TCTCGAGAGGGGCTGCATGCCTTCC--------------------------- 848 consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 TCCTACTATTTTGCTACGGGCTGCATACCTTCCTTCGACCTTGCGACGGAGCAGTGGAGC 854 consensus_3932#1 ------------------------------------------------------------ consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 ACGGCTCTCCAAGGGCCAGTAAACAGAATTCTTGAGGAAGCGAATGGCACACTCAACTAT 914 consensus_3932#1 ------------------------------------------------------------ consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 GCTGACCTTACCGATCGTCTTATGTTAGCCCAACTTGAAGGAACTTTGTGTACAGCACAT 974 consensus_3932#1 ------------------------------------------------------------ consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 TTCAATGATCAAATTTCTGCGGTGGACTTATGGTTTCTAGTTGATTTTGAGAATGGTATG 1034 consensus_3932#1 ------------------------------------------------------------ consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 TGGTCCAAAGAATATAGGATAAATGTTGAATTTGCTTTTGATGGTTTTGGAGATGGTGTG 1094 consensus_3932#1 ------------------------------------------------------------ consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 CAACCTTTGCTTGTGACGGATGAGGGAAATGTGGTACTTTGGGTGCAGATAGGATCAAAA 1154 consensus_3932#1 ------------------------------------------------------------ consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 GGGATGGTCTGGATTTATAATCCAGTAACCAACACTTCCTCAGAGATAGTTCAGACAAAG 1214 consensus_3932#1 ------------------------------------------------------------ consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 GCTAGTATCTTTACTGGAGTAGGTGTATATACTGGAAATCAATTATGTCCACAGAGTATG 1274 consensus_3932#1 ------------------------------------------------------------ consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 TGACAAGAAATGGAAGAAGTGCCAAAAGAAGAGGAGCAAAACCGATGTCAGGACTGGTGT 1334 consensus_3932#1 ------------------------------------------------------------ consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 GATTGCATACTGGAGAATTTGAGGCCGCTCCTGAAAACTATAACACTCTTGGACAGGCTA 1394 consensus_3932#1 ------------------------------------------------------------ consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 CTGTCGTGCAAGCTACTGGGGTGTTATTTTTCTTGGTTCTGCAGATGGTTCAGTTATGCA 1454 consensus_3932#1 ------------------------------------------------------------ consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 GCTAGTGAATAGTTTTTGGACCTGTGGGTTGTTCCATGGTATTTTCTACCTAAAACTGGA 1514 consensus_3932#1 ------------------------------------------------------------ consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 ATCCACAGTATGCTGCTTTTAATTATTGTTTGTGAATCTCTAAAGAAATCCCTGTCCCCG 1574 consensus_3932#1 ---------------------------------------------------- consensus_3932#2 ---------------------------------------------------- consensus_3932#0 TGTTGGCTTTCTTTCAAAGACGGATCATAATGATATCGGTTCCAAAAAAATG 1626 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||