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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1626 fasta sequence
[CCGGCGAGAGACGAGAGACGGCGCCACCACCGCCGCCGCCGCCGCCGTGCTGGACTCCGGCTGGCCACCGCGCTCCGCTCGAGGCGTCCGCGATGGCGTCCCCAGAGCCGTGCGCCGCCGCCGCCGCACCGGGAAGCGGGTTCGGAGCCGTGGACGGCGTCCTGCCCCCGGAGCTGCTGCTCGAGGTCCTGCTGCGCCTCCCCGCCAAGCCGATCTGCCGCCTCCGCGCCGTCTGCCGCTCGTGGCTGTCCTTCACCACGGACCGGCTCTTCCTCGCCGCCTACGCCGCCGTCCACCCTCACCCGCTCCTCGCCGTCTTGGTTGACAGCTTCCCCAGTCGATGCTGCGTTGATCTCGTGGACCTGTCCGGCAACGTCGTCGAGGAGATCCTCGGCGTGGGCGGCGAGTGCAGGGTGCTGACGGCGAGCTACGACCGTGTCCTCGTCGCCGGGGAGCACCACCGCGTCAGCGTGCTCGACCCCGCCACAGGATCCGTCTCCGCCTTGCCCTTCGGCATTGCAGAGGATATGGTGCGTCGCAACGGGATGAGGCCAGCCTGGTTTGCATTTGGTCAGACGAATTCCACAGGAGAGTACAAACTACTCCGGATTCTAGAGGACTTGGAGGATGGATATGAGGCTGATCCAGTGTGTGAGGTTTTCGCAATCGGCGACATGAATGGACGGTGGAGGAAGATGGAGAGTCCACCGGGGTATCTTGATCCGAGCTGCACCAATGGAGTTGTCTTCGAAGGGGCTGCTTACTTCTTCTTGGATCACTGGCAAATGGATCCCTCCTACTATTTTGCTACGGGCTGCATACCTTCCTTCGACCTTGCGACGGAGCAGTGGAGCACGGCTCTCCAAGGGCCAGTAAACAGAATTCTTGAGGAAGCGAATGGCACACTCAACTATGCTGACCTTACCGATCGTCTTATGTTAGCCCAACTTGAAGGAACTTTGTGTACAGCACATTTCAATGATCAAATTTCTGCGGTGGACTTATGGTTTCTAGTTGATTTTGAGAATGGTATGTGGTCCAAAGAATATAGGATAAATGTTGAATTTGCTTTTGATGGTTTTGGAGATGGTGTGCAACCTTTGCTTGTGACGGATGAGGGAAATGTGGTACTTTGGGTGCAGATAGGATCAAAAGGGATGGTCTGGATTTATAATCCAGTAACCAACACTTCCTCAGAGATAGTTCAGACAAAGGCTAGTATCTTTACTGGAGTAGGTGTATATACTGGAAATCAATTATGTCCACAGAGTATGTGACAAGAAATGGAAGAAGTGCCAAAAGAAGAGGAGCAAAACCGATGTCAGGACTGGTGTGATTGCATACTGGAGAATTTGAGGCCGCTCCTGAAAACTATAACACTCTTGGACAGGCTACTGTCGTGCAAGCTACTGGGGTGTTATTTTTCTTGGTTCTGCAGATGGTTCAGTTATGCAGCTAGTGAATAGTTTTTGGACCTGTGGGTTGTTCCATGGTATTTTCTACCTAAAACTGGAATCCACAGTATGCTGCTTTTAATTATTGTTTGTGAATCTCTAAAGAAATCCCTGTCCCCGTGTTGGCTTTCTTTCAAAGACGGATCATAATGATATCGGTTCCAAAAAAATG]
[+] EMBL AK063340 [CCGGCGAGAGACGAGAGACGGCGCCACCACCGCCGCCGCCGCCGCCGTGCTGGACTCCGGCTGGCCACCGCGCTCCGCTCGAGGCGTCCGCGATGGCGTCCCCAGAGCCGTGCGCCGCCGCCGCCGCACCGGGAAGCGGGTTCGGAGCCGTGGACGGCGTCCTGCCCCCGGAGCTGCTGCTCGAGGTCCTGCTGCGCCTCCCCGCCAAGCCGATCTGCCGCCTCCGCGCCGTCTGCCGCTCGTGGCTGTCCTTCACCACGGACCGGCTCTTCCTCGCCGCCTACGCCGCCGTCCACCCTCACCCGCTCCTCGCCGTCTTGGTTGACAGCTTCCCCAGTCGATGCTGCGTTGATCTCGTGGACCTGTCCGGCAACGTCGTCGAGGAGATCCTCGGCGTGGGCGGCGAGTGCAGGGTGCTGACGGCGAGCTACGACCGTGTCCTCGTCGCCGGGGAGCACCACCGCGTCAGCGTGCTCGACCCCGCCACAGGATCCGTCTCCGCCTTGCCCTTCGGCATTGCAGAGGATATGGTGCGTCGCAACGGGATGAGGCCAGCCTGGTTTGCATTTGGTCAGACGAATTCCACAGGAGAGTACAAACTACTCCGGATTCTAGAGGACTTGGAGGATGGATATGAGGCTGATCCAGTGTGTGAGGTTTTCGCAATCGGCGACATGAATGGACGGTGGAGGAAGATGGAGAGTCCACCGGGGTATCTTGATCCGAGCTGCACCAATGGAGTTGTCTTCGAAGGGGCTGCTTACTTCTTCTTGGATCACTGGCAAATGGATCCCTCCTACTATTTTGCTACGGGCTGCATACCTTCCTTCGACCTTGCGACGGAGCAGTGGAGCACGGCTCTCCAAGGGCCAGTAAACAGAATTCTTGAGGAAGCGAATGGCACACTCAACTATGCTGACCTTACCGATCGTCTTATGTTAGCCCAACTTGAAGGAACTTTGTGTACAGCACATTTCAATGATCAAATTTCTGCGGTGGACTTATGGTTTCTAGTTGATTTTGAGAATGGTATGTGGTCCAAAGAATATAGGATAAATGTTGAATTTGCTTTTGATGGTTTTGGAGATGGTGTGCAACCTTTGCTTGTGACGGATGAGGGAAATGTGGTACTTTGGGTGCAGATAGGATCAAAAGGGATGGTCTGGATTTATAATCCAGTAACCAACACTTCCTCAGAGATAGTTCAGACAAAGGCTAGTATCTTTACTGGAGTAGGTGTATATACTGGAAATCAATTATGTCCACAGAGTATGTGACAAGAAATGGAAGAAGTGCCAAAAGAAGAGGAGCAAAACCGATGTCAGGACTGGTGTGATTGCATACTGGAGAATTTGAGGCCGCTCCTGAAAACTATAACACTCTTGGACAGGCTACTGTCGTGCAAGCTACTGGGGTGTTATTTTTCTTGGTTCTGCAGATGGTTCAGTTATGCAGCTAGTGAATAGTTTTTGGACCTGTGGGTTGTTCCATGGTATTTTCTACCTAAAACTGGAATCCACAGTATGCTGCTTTTAATTATTGTTTGTGAATCTCTAAAGAAATCCCTGTCCCCGTGTTGGCTTTCTTTCAAAGACGGATCATAATGATATCGGTTCCAAAAAAATG]
consensusID : consensus_3932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 848 fasta sequence
[TCCGGCGAGAGCCGCCGCCGCCGACGTGCCGGACTCCGGCCGCACCACCGGCCACCGCGCTAGCTCCGCTTCAGGTAAATCCCCTGAGCAGAGAAGATGGGTTGAAATCTCATCCGTTTTTTTTTGATTTGAGGTCTCCTACCTCCGGCGATGGAGTCGGCGGCGGCGGCGGCGGGGTGGGGGCTCGGAGCCGTGGACGGCGTCCTGCCGCCGGAGCTGCTGCTCGACGTCCTGCTGCGCCTCCCTGCCGGGCCGATCTGCCGCCTCCGCGCCGTCTGCCGCTCGTGGCTCGCCTTCACCACCGACCCGCACTTCGTCGCCGCGCACGCCGCCCGCCACCCTGCCCCGCTCCTCGCCGTCGGCGTGCAGGGCTTCCCCAGGCTCTGCGTCGACCTCGTCGACCTCTCCGGCAACCTTGTCAAGCAGATCCTCCGCGTGGGGAAAGGCAGGGTGGTGAGCGGGAGCTCCGCCGACCGTGTCCTCGTCGCCGGCGAGGACCACAGCGTCCGCGTGCTCAACCCTACCACTGGATCCATTTCAATTTTACCTAGCCATCGCTGCGGCGGCGCAGACCCCTCAACGATTGCGGCCTGGTTTGCATTTGGTCAGACAGCTTCCACGGGGGAGTGCAAATTAGTCCGGATTTTACTGAATATTGATAACTCTCGTCACCTATCCGAGGTTATCACCATCGGCGACACGGATGGAGAGTGGAGGGAGACGGCGAACCCGCCAGGCTACCTTGGTTGGAACTGCACCAATGGAGTTGTGTTCAAAGGCGCTGCTTACTTCATCTTGGATTACTGTTTCTCTGATCCCTCCTTCTCGAGAGGGGCTGCATGCCTTCC]
[+] EMBL CB642210 [TCCGGCGAGAGCCGCCGCCGCCGACGTGCCGGACTCCGGCCGCACCACCGGCCACCGCGCTAGCTCCGCTTCAGGTAAATCCCCTGAGCAGAGAAGATGGGTTGAAATCTCATCCGTTTTTTTTTGATTTGAGGTCTCCTACCTCCGGCGATGGAGTCGGCGGCGGCGGCGGCGGGGTGGGGGCTCGGAGCCGTGGACGGCGTCCTGCCGCCGGAGCTGCTGCTCGACGTCCTGCTGCGCCTCCCTGCCGGGCCGATCTGCCGCCTCCGCGCCGTCTGCCGCTCGTGGCTCGCCTTCACCACCGACCCGCACTTCGTCGCCGCGCACGCCGCCCGCCACCCTGCCCCGCTCCTCGCCGTCGGCGTGCAGGGCTTCCCCAGGCTCTGCGTCGACCTCGTCGACCTCTCCGGCAACCTTGTCAAGCAGATCCTCCGCGTGGGGAAAGGCAGGGTGGTGAGCGGGAGCTCCGCCGACCGTGTCCTCGTCGCCGGCGAGGACCACAGCGTCCGCGTGCTCAACCCTACCACTGGATCCATTTCAATTTTACCTAGCCATCGCTGCGGCGGCGCAGACCCCTCAACGATTGCGGCCTGGTTTGCATTTGGTCAGACAGCTTCCACGGGGGAGTGCAAATTAGTCCGGATTTTACTGAATATTGATAACTCTCGTCACCTATCCGAGGTTATCACCATCGGCGACACGGATGGAGAGTGGAGGGAGACGGCGAACCCGCCAGGCTACCTTGGTTGGAACTGCACCAATGGAGTTGTGTTCAAAGGCGCTGCTTACTTCATCTTGGATTACTGTTTCTCTGATCCCTCCTTCTCGAGAGGGGCTGCATGCCTTCC]
consensusID : consensus_3932#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence
[GGGGCTCGGNGCCGTGGNCGGNGTCCTGNCGCCGGNGCTGCTGCTCGACGTCCTGCTGCGCCTCCCTGCCGGGCCGATCTGCCGCCTCCGCGCCGTCTGCCGCTCGTGGCTCGCCTTCACCACCGACCCGCACTTCGTCGCCGCGCACGCCNCCCGNCACCCTGCCCCGCTCCTCNCCGTCGGCGTNCANGGCTTCCCCANGCTCTGCNTCGATCTCGTCGANCTCTCCNGCAACNTTGTCAAGCAAATNNTCCGNTTGGGGAAANGNNCGGTTTTTATCGGGAACTCCCCCAANNGTG]
[+] EMBL AA753113 [GGGGCTCGGNGCCGTGGNCGGNGTCCTGNCGCCGGNGCTGCTGCTCGACGTCCTGCTGCGCCTCCCTGCCGGGCCGATCTGCCGCCTCCGCGCCGTCTGCCGCTCGTGGCTCGCCTTCACCACCGACCCGCACTTCGTCGCCGCGCACGCCNCCCGNCACCCTGCCCCGCTCCTCNCCGTCGGCGTNCANGGCTTCCCCANGCTCTGCNTCGATCTCGTCGANCTCTCCNGCAACNTTGTCAAGCAAATNNTCCGNTTGGGGAAANGNNCGGTTTTTATCGGGAACTCCCCCAANNGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3932#1 TCCGGCGAGAGCCGCCGCCGCCGACGTGCCGGACTCCGGCCGCACCACCGGCCACCGCGC 60
consensus_3932#2 ------------------------------------------------------------
consensus_3932#0 ------------------------------------CCGGCGAGAGACGAGAGACGGCGC 24
consensus_3932#1 TAGCTCCGCTTCAGGTAAATCCCCTGAGCAGAGAAGATGGGTTGAAATCTCATCCGTTTT 120
consensus_3932#2 ------------------------------------------------------------
consensus_3932#0 CACCACCGCCGCCG-----CCGCCGCCGTGCTGGACTCCGGCTG--GCCACCGCGCTCCG 77
consensus_3932#1 TTTTTGATTTGAGGTCTCCTACCTCCGGCGATGGAGTCGGCGGCGGCGGCGGCGGGGTGG 180
consensus_3932#2 -----------------------------------------------------------G 1
consensus_3932#0 CTCGAGGCGTCCGCGATGGCGTCCCCAGAGCCGTGCGCCGCCGCCGCCGCACCGGGAAGC 137
consensus_3932#1 GGGCTCGGAGCCGTGGACGGCGTCCTGCCGCCGGAGCTGCTGCTCGACGTCCTGCTGCGC 240
consensus_3932#2 GGGCTCGGNGCCGTGGNCGGNGTCCTGNCGCCGGNGCTGCTGCTCGACGTCCTGCTGCGC 61
consensus_3932#0 GGGTTCGGAGCCGTGGACGGCGTCCTGCCCCCGGAGCTGCTGCTCGAGGTCCTGCTGCGC 197
*** **** ******* *** ****** * **** ************ ************
consensus_3932#1 CTCCCTGCCGGGCCGATCTGCCGCCTCCGCGCCGTCTGCCGCTCGTGGCTCGCCTTCACC 300
consensus_3932#2 CTCCCTGCCGGGCCGATCTGCCGCCTCCGCGCCGTCTGCCGCTCGTGGCTCGCCTTCACC 121
consensus_3932#0 CTCCCCGCCAAGCCGATCTGCCGCCTCCGCGCCGTCTGCCGCTCGTGGCTGTCCTTCACC 257
***** *** *************************************** ********
consensus_3932#1 ACCGACCCGCACTTCGTCGCCGCGCACGCCGCCCGCCACCCTGCCCCGCTCCTCGCCGTC 360
consensus_3932#2 ACCGACCCGCACTTCGTCGCCGCGCACGCCNCCCGNCACCCTGCCCCGCTCCTCNCCGTC 181
consensus_3932#0 ACGGACCGGCTCTTCCTCGCCGCCTACGCCGCCGTCCACCCTCACCCGCTCCTCGCCGTC 317
** **** ** **** ******* ***** ** ****** ********** *****
consensus_3932#1 GGCGTGCAGGGCTTCCCCAGGCT---CTGCGTCGACCTCGTCGACCTCTCCGGCAACCTT 417
consensus_3932#2 GGCGTNCANGGCTTCCCCANGCT---CTGCNTCGATCTCGTCGANCTCTCCNGCAACNTT 238
consensus_3932#0 TTGGTTGACAGCTTCCCCAGTCGATGCTGCGTTGATCTCGTGGACCTGTCCGGCAACGTC 377
** * ********* * **** * ** ***** ** ** *** ***** *
consensus_3932#1 GTCAAGCAGATCCTCCGCGTGGGGA---AAGGCAGGGTGGTGAGCGGGAGCTCCGCCGAC 474
consensus_3932#2 GTCAAGCAAATNNTCCGNTTGGGGA---AANGNNCGGTTTTTATCGGGAACTCCCCCAAN 295
consensus_3932#0 GTCGAGGAGATCCTCGGCGTGGGCGGCGAGTGCAGGGTGCTGACGGCGAGCTA---CGAC 434
*** ** * ** ** * **** * * *** * * * ** ** * *
consensus_3932#1 CGTGTCCTCGTCGCCGGCGAGGACCACAGCGTCCGCGTGCTCAACCCTACCACTGGATCC 534
consensus_3932#2 NGTG-------------------------------------------------------- 299
consensus_3932#0 CGTGTCCTCGTCGCCGGGGAGCACCACCGCGTCAGCGTGCTCGACCCCGCCACAGGATCC 494
***
consensus_3932#1 ATTTCAATTTTACC--TAGCCATCGCTGCGGCGGCGCAGACCCCTCAACGATTG----CG 588
consensus_3932#2 ------------------------------------------------------------
consensus_3932#0 GTCTCCGCCTTGCCCTTCGGCATTGCAGAGGATATGGTGCGTCGCAACGGGATGAGGCCA 554
consensus_3932#1 GCCTGGTTTGCATTTGGTCAGACAGCTTCCACGGGGGAGTGCAAATTAGTCCGGATTTTA 648
consensus_3932#2 ------------------------------------------------------------
consensus_3932#0 GCCTGGTTTGCATTTGGTCAGACGAATTCCACAGGAGAGTACAAACTACTCCGGATTCTA 614
consensus_3932#1 CTGAATATTGA---------TAACTCTCGTCACCTATCCGAGGTTATCACCATCGGCGAC 699
consensus_3932#2 ------------------------------------------------------------
consensus_3932#0 GAGGACTTGGAGGATGGATATGAGGCTGATCCAGTGTGTGAGGTTTTCGCAATCGGCGAC 674
consensus_3932#1 ACGGATGGAGAGTGGAGGGAGACGGCGAACCCGCCAGGCTACCTTGGTTGGAACTGCACC 759
consensus_3932#2 ------------------------------------------------------------
consensus_3932#0 ATGAATGGACGGTGGAGGAAGATGGAGAGTCCACCGGGGTATCTTGATCCGAGCTGCACC 734
consensus_3932#1 AATGGAGTTGTGTTCAAAGGCGCTGCTTACTTCATCTTGGATTACTGTTTCTCTGATCCC 819
consensus_3932#2 ------------------------------------------------------------
consensus_3932#0 AATGGAGTTGTCTTCGAAGGGGCTGCTTACTTCTTCTTGGATCACTGGCAAATGGATCCC 794
consensus_3932#1 TCCT----TCTCGAGAGGGGCTGCATGCCTTCC--------------------------- 848
consensus_3932#2 ------------------------------------------------------------
consensus_3932#0 TCCTACTATTTTGCTACGGGCTGCATACCTTCCTTCGACCTTGCGACGGAGCAGTGGAGC 854
consensus_3932#1 ------------------------------------------------------------
consensus_3932#2 ------------------------------------------------------------
consensus_3932#0 ACGGCTCTCCAAGGGCCAGTAAACAGAATTCTTGAGGAAGCGAATGGCACACTCAACTAT 914
consensus_3932#1 ------------------------------------------------------------
consensus_3932#2 ------------------------------------------------------------
consensus_3932#0 GCTGACCTTACCGATCGTCTTATGTTAGCCCAACTTGAAGGAACTTTGTGTACAGCACAT 974
consensus_3932#1 ------------------------------------------------------------
consensus_3932#2 ------------------------------------------------------------
consensus_3932#0 TTCAATGATCAAATTTCTGCGGTGGACTTATGGTTTCTAGTTGATTTTGAGAATGGTATG 1034
consensus_3932#1 ------------------------------------------------------------
consensus_3932#2 ------------------------------------------------------------
consensus_3932#0 TGGTCCAAAGAATATAGGATAAATGTTGAATTTGCTTTTGATGGTTTTGGAGATGGTGTG 1094
consensus_3932#1 ------------------------------------------------------------
consensus_3932#2 ------------------------------------------------------------
consensus_3932#0 CAACCTTTGCTTGTGACGGATGAGGGAAATGTGGTACTTTGGGTGCAGATAGGATCAAAA 1154
consensus_3932#1 ------------------------------------------------------------
consensus_3932#2 ------------------------------------------------------------
consensus_3932#0 GGGATGGTCTGGATTTATAATCCAGTAACCAACACTTCCTCAGAGATAGTTCAGACAAAG 1214
consensus_3932#1 ------------------------------------------------------------
consensus_3932#2 ------------------------------------------------------------
consensus_3932#0 GCTAGTATCTTTACTGGAGTAGGTGTATATACTGGAAATCAATTATGTCCACAGAGTATG 1274
consensus_3932#1 ------------------------------------------------------------
consensus_3932#2 ------------------------------------------------------------
consensus_3932#0 TGACAAGAAATGGAAGAAGTGCCAAAAGAAGAGGAGCAAAACCGATGTCAGGACTGGTGT 1334
consensus_3932#1 ------------------------------------------------------------
consensus_3932#2 ------------------------------------------------------------
consensus_3932#0 GATTGCATACTGGAGAATTTGAGGCCGCTCCTGAAAACTATAACACTCTTGGACAGGCTA 1394
consensus_3932#1 ------------------------------------------------------------
consensus_3932#2 ------------------------------------------------------------
consensus_3932#0 CTGTCGTGCAAGCTACTGGGGTGTTATTTTTCTTGGTTCTGCAGATGGTTCAGTTATGCA 1454
consensus_3932#1 ------------------------------------------------------------
consensus_3932#2 ------------------------------------------------------------
consensus_3932#0 GCTAGTGAATAGTTTTTGGACCTGTGGGTTGTTCCATGGTATTTTCTACCTAAAACTGGA 1514
consensus_3932#1 ------------------------------------------------------------
consensus_3932#2 ------------------------------------------------------------
consensus_3932#0 ATCCACAGTATGCTGCTTTTAATTATTGTTTGTGAATCTCTAAAGAAATCCCTGTCCCCG 1574
consensus_3932#1 ----------------------------------------------------
consensus_3932#2 ----------------------------------------------------
consensus_3932#0 TGTTGGCTTTCTTTCAAAGACGGATCATAATGATATCGGTTCCAAAAAAATG 1626
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||