These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3935#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 677 fasta sequence [GCTTCAGCTACGTAGCCGTTGTTCATCACTCACTCAACTCAGCTCAGTAGTCAGTGCGTACTAGGGACCGATCGATGGAGAAGCTGGTGCCGAACACGAAGAAGGCAATGGAGGACAAGGAGGAGAAGCCCAAGGTGCCTTCGAGCGACCCGGACCTCGTCGACCTCGTCGCCGGCGAGCAGCCGCAGCTGCAGCGGGAGCACCAGCCGCCCAACATCTCCGAGATGAAGCCGCTGACGCGGGAGGCGTACGGCGGCGGGATGTACGCCAACGAGGGGCGGAGGGACCCGACGCGGCCGCGCGCCAGCGCCACGCAGAGCGCCGACGGCCCGGAGGAGGCCGCCGTCAGGCCCAAGCACGCGCCGCCGCCGTCCACCGGCGACCGCGACCTCGACATCACCGGCCAGTCCTACATCCAGTAGTTTGTTGTGTGTGTCCGTGCCGTGACGGTGTATGCGTGTAGTCAGGCAGTTTGGTCCGGAACAAAGATGTGCATAGGTCGTTCCACGCTGTAACGAATAAATGTAAGTTTACTTGCTGTAATTTGGCCCAATAAGGCTACCGGCCTACCAACCGGAGATCGTTAGTCTTGGCCTACTAACTCTTATGGACCTTGCCAATGGGCTAATCTGACCAAGTGCCCATGGATCATAATAAAGTCACGAGGAACCTCTCTT] [+] EMBL AK063608 [GCTTCAGCTACGTAGCCGTTGTTCATCACTCACTCAACTCAGCTCAGTAGTCAGTGCGTACTAGGGACCGATCGATGGAGAAGCTGGTGCCGAACACGAAGAAGGCAATGGAGGACAAGGAGGAGAAGCCCAAGGTGCCTTCGAGCGACCCGGACCTCGTCGACCTCGTCGCCGGCGAGCAGCCGCAGCTGCAGCGGGAGCACCAGCCGCCCAACATCTCCGAGATGAAGCCGCTGACGCGGGAGGCGTACGGCGGCGGGATGTACGCCAACGAGGGGCGGAGGGACCCGACGCGGCCGCGCGCCAGCGCCACGCAGAGCGCCGACGGCCCGGAGGAGGCCGCCGTCAGGCCCAAGCACGCGCCGCCGCCGTCCACCGGCGACCGCGACCTCGACATCACCGGCCAGTCCTACATCCAGTAGTTTGTTGTGTGTGTCCGTGCCGTGACGGTGTATGCGTGTAGTCAGGCAGTTTGGTCCGGAACAAAGATGTGCATAGGTCGTTCCACGCTGTAACGAATAAATGTAAGTTTACTTGCTGTAATTTGGCCCAATAAGGCTACCGGCCTACCAACCGGAGATCGTTAGTCTTGGCCTACTAACTCTTATGGACCTTGCCAATGGGCTAATCTGACCAAGTGCCCATGGATCATAATAAAGTCACGAGGAACCTCTCTT] [+] EMBL AK119680 [ GCTACGTAGCCGTTGTTCATCACTCACTCAACTCAGCTCAGTAGTCAGTGCGTACTAGGGACCGATCGATGGAGAAGCTGGTGCCGAACACGAAGAAGGCAATGGAGGACAAGGAGGAGAAGCCCAAGGTGCCTTCGAGCGACCCGGACCTCGTCGACCTCGTCGCCGGCGAGCAGCCGCAGCTGCAGCGGGAGCACCAGCCGCCCAACATCTCCGAGATGAAGCCGCTGACGCGGGAGGCGTACGGCGGCGGGATGTACGCCAACGAGGGGCGGAGGGACCCGACGCGGCCGCGCGCCAGCGCCACGCAGAGCGCCGACGGCCCGGAGGAGGCCGCCGTCAGGCCCAAGCACGCGCCGCCGCCGTCCACCGGCGACCGCGACCTCGACATCACCGGCCAGTCCTACATCCAGTAGTTTGTTGTGTGTGTCCGTGCCGTGACGGTGTATGCGTGTAGTCAGGCAGTTTGGTCCGGAACAAAGATGTGCATAGGTCGTTCCACGCTGTAACGAATAAATGTAAGTTTACTTGCTGTAATTTGGCCCAATAAGGCTACCGGCCTTCCAACCGGAGATCGTTAGTCTTGGCCTACTAACTCTTATGGACCTTGCCAATGGGCTAATCTGACCAAGTGCCCATGGATCATAATAAAGTCACGAGGAACCTCTCTT] consensusID : consensus_3935#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 139 fasta sequence [GAGTAGAAATTGGCCTACTAACTCTTATGGACCTTGCCAATGGGCTAATCTGACCAAGTGCCCATGGATCATANTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF315075 [GAGTAGAAATTGGCCTACTAACTCTTATGGACCTTGCCAATGGGCTAATCTGACCAAGTGCCCATGGATCATANTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3935#0 GCTTCAGCTACGTAGCCGTTGTTCATCACTCACTCAACTCAGCTCAGTAGTCAGTGCGTA 60 consensus_3935#1 ------------------------------------------------------------ consensus_3935#0 CTAGGGACCGATCGATGGAGAAGCTGGTGCCGAACACGAAGAAGGCAATGGAGGACAAGG 120 consensus_3935#1 ------------------------------------------------------------ consensus_3935#0 AGGAGAAGCCCAAGGTGCCTTCGAGCGACCCGGACCTCGTCGACCTCGTCGCCGGCGAGC 180 consensus_3935#1 ------------------------------------------------------------ consensus_3935#0 AGCCGCAGCTGCAGCGGGAGCACCAGCCGCCCAACATCTCCGAGATGAAGCCGCTGACGC 240 consensus_3935#1 ------------------------------------------------------------ consensus_3935#0 GGGAGGCGTACGGCGGCGGGATGTACGCCAACGAGGGGCGGAGGGACCCGACGCGGCCGC 300 consensus_3935#1 ------------------------------------------------------------ consensus_3935#0 GCGCCAGCGCCACGCAGAGCGCCGACGGCCCGGAGGAGGCCGCCGTCAGGCCCAAGCACG 360 consensus_3935#1 ------------------------------------------------------------ consensus_3935#0 CGCCGCCGCCGTCCACCGGCGACCGCGACCTCGACATCACCGGCCAGTCCTACATCCAGT 420 consensus_3935#1 ------------------------------------------------------------ consensus_3935#0 AGTTTGTTGTGTGTGTCCGTGCCGTGACGGTGTATGCGTGTAGTCAGGCAGTTTGGTCCG 480 consensus_3935#1 ------------------------------------------------------------ consensus_3935#0 GAACAAAGATGTGCATAGGTCGTTCCACGCTGTAACGAATAAATGTAAGTTTACTTGCTG 540 consensus_3935#1 ------------------------------------------------------------ consensus_3935#0 TAATTTGGCCCAATAAGGCTACCGGCCTACCAACCGGAGATCGTTAGTCTTGGCCTACTA 600 consensus_3935#1 ----------------------------------------GAGTAGAAATTGGCCTACTA 20 ** *********** consensus_3935#0 ACTCTTATGGACCTTGCCAATGGGCTAATCTGACCAAGTGCCCATGGATCATAATAAAGT 660 consensus_3935#1 ACTCTTATGGACCTTGCCAATGGGCTAATCTGACCAAGTGCCCATGGATCATANTAAAAA 80 ***************************************************** **** consensus_3935#0 CACGAGGAACCTCTCTT------------------------------------------ 677 consensus_3935#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 139 * * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||