These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3936#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 945 fasta sequence [CGCGGCCACGTCCACCCCAACCTCCCCTTCCGCCGATGCCGGAGCGCCGCCACCTCGCCGGAGACTCACCGTGCTGGTGATCATCCTCCGGACAACCCACCATGGAGCGCCTCCTGCACTTCCGGCCCCCGAAACCGACCTCTGCCAATGCCGTTGCAGCGGCGGCTACCGCCGACGGCGACCTCCTCGAGCTCGACGTGCTCTGGCCTGCATCCCGCGCCCCGGGCCTCCTCGCGGCGCTCCCTGAGGAGGACGGGAAGCGGAGGAGGAAGCGCGGCGGGAGCGGGAGCGGGAGCGTGGCCGTCCGATCCGCGGCGCGGCCTATCCCGGAGACCGCCGCGTTGACCCTGGTCCCGTCGTCGTCCGCGGCGGCGATGGCGAAGTCGGCGCCGGTGAGGATACCGTCGGAGGCGGCGGCGGCGCGTAGGGGGGTGATGTGGGCGGCGCAGGCGGGCGGCGAGGACGGGGAGGCGGCCATGGTCCCGCCCCACGAGATCGTGGCGCGGCGCGCCGCGGCGCACAGCTCGGTGCTGGAGGGCTCCGGGAGGACGCTCAAGGGGCGCGACCTCCACCGCGTCCGCAACGCCGTCCTCCGCCGCACCGGCTTCCTCGACTGAGGCGAAGAATAAACGGCTTATGATGCTTACCTTCGGCGCTAAATAGTTGTGACAGCACTCTTGGGGGGACCATTGCCCCTCAGCAACACAATTCCTATAAGGAAACATATGGTATGCTCACTGCTCAGTTCACCTCATAGGTCTAGAACTTCTTGCTATCCCTTGGTTTTTTACGTAATAGAGGGAGTAGTTATGTTGCTTCGTAACCAAAACTTGGGTGTTTGTGGTTATGGTAAAGGAGTTATGTACACATTTTTGTGTGTTTTCCTGGCTTTGATTTATTGTTTTATCAATCCTCTCTTACCAAGGTTTTATTCAGACTATCTGA] [+] EMBL AK072969 [CGCGGCCACGTCCACCCCAACCTCCCCTTCCGCCGATGCCGGAGCGCCGCCACCTCGCCGGAGACTCACCGTGCTGGTGATCATCCTCCGGACAACCCACCATGGAGCGCCTCCTGCACTTCCGGCCCCCGAAACCGACCTCTGCCAATGCCGTTGCAGCGGCGGCTACCGCCGACGGCGACCTCCTCGAGCTCGACGTGCTCTGGCCTGCATCCCGCGCCCCGGGCCTCCTCGCGGCGCTCCCTGAGGAGGACGGGAAGCGGAGGAGGAAGCGCGGCGGGAGCGGGAGCGGGAGCGTGGCCGTCCGATCCGCGGCGCGGCCTATCCCGGAGACCGCCGCGTTGACCCTGGTCCCGTCGTCGTCCGCGGCGGCGATGGCGAAGTCGGCGCCGGTGAGGATACCGTCGGAGGCGGCGGCGGCGCGTAGGGGGGTGATGTGGGCGGCGCAGGCGGGCGGCGAGGACGGGGAGGCGGCCATGGTCCCGCCCCACGAGATCGTGGCGCGGCGCGCCGCGGCGCACAGCTCGGTGCTGGAGGGCTCCGGGAGGACGCTCAAGGGGCGCGACCTCCACCGCGTCCGCAACGCCGTCCTCCGCCGCACCGGCTTCCTCGACTGAGGCGAAGAATAAACGGCTTATGATGCTTACCTTCGGCGCTAAATAGTTGTGACAGCACTCTTGGGGGGACCATTGCCCCTCAGCAACACAATTCCTATAAGGAAACATATGGTATGCTCACTGCTCAGTTCACCTCATAGGTCTAGAACTTCTTGCTATCCCTTGGTTTTTTACGTAATAGAGGGAGTAGTTATGTTGCTTCGTAACCAAAACTTGGGTGTTTGTGGTTATGGTAAAGGAGTTATGTACACATTTTTGTGTGTTTTCCTGGCTTTGATTTATTGTTTTATCAATCCTCTCTTACCAAGGTTTTATTCAGACTATCTGA] consensusID : consensus_3936#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 785 fasta sequence [ACCTCGTTGCAATCGCTGGTCGCCGCCGCCGCCGCAGCCGTCGACGGCGAAGGGGAGATCAGAGCCAAAGGATTGATCCGTGGCTGCTCCGTGGGGGGCGATGGCGATGCCGCGGTCGCCGGGCGCGGGCTCGCTCCGGTTTCTTGGCCTCCTGAAGCAGCCGGAGTCGGGGCCCGACGGCGCGGCGCCGCCGTTCGAGCTCGACGAGAGCGACGTGGTGTGGCCGGCCGGCGGTGTCGGGGACGACGGTTACTGCTGCCCGGCGCCGCCACACCCGGAGGGCCCACCGCGCGCGCCCCGCCGCGCCCACACGGTGCCGCAGAGCTTCGGGCTGTCGTCGCTGCTCGCCAACGGGGGGCGCGGCGGCGGCAGCGACGACGGGCGTCAGGATGGAGTGGCCGTGCCCGTGAGGGCCGCGGCGGCGCCGGGTGGAGGCGCCGCGGCACCGAGGCGGTCGGCACCGGTGAGGGTCCCGATGTGGCCGGGCAAGGGCGCCGCCGCCAACAACGTCGTCGGCGGCGAGGAGTCCGACGACAACGAGGACGACGAGATGGGGCCGCCGCACGTGGTGGCGGCGCGGCGGCACGCGCGGTCGTCGTCGGTGCTGGAGGGCGCCGGGAGGACGCTCAAGGGGCGCGACCTCCGCCGCGTCCGCAACGCCGTGCTCCGGCAGACCGGATTCCTCGACCTCTGAAGAATCCAAAGCATCCCATCGCCATCATCATATCTTGATTAGCCATTTCTCATCATCAGTTTTCCGGTGTGACTAAAAAAAAAAACTTTGT] [+] EMBL AK107900 [ACCTCGTTGCAATCGCTGGTCGCCGCCGCCGCCGCAGCCGTCGACGGCGAAGGGGAGATCAGAGCCAAAGGATTGATCCGTGGCTGCTCCGTGGGGGGCGATGGCGATGCCGCGGTCGCCGGGCGCGGGCTCGCTCCGGTTTCTTGGCCTCCTGAAGCAGCCGGAGTCGGGGCCCGACGGCGCGGCGCCGCCGTTCGAGCTCGACGAGAGCGACGTGGTGTGGCCGGCCGGCGGTGTCGGGGACGACGGTTACTGCTGCCCGGCGCCGCCACACCCGGAGGGCCCACCGCGCGCGCCCCGCCGCGCCCACACGGTGCCGCAGAGCTTCGGGCTGTCGTCGCTGCTCGCCAACGGGGGGCGCGGCGGCGGCAGCGACGACGGGCGTCAGGATGGAGTGGCCGTGCCCGTGAGGGCCGCGGCGGCGCCGGGTGGAGGCGCCGCGGCACCGAGGCGGTCGGCACCGGTGAGGGTCCCGATGTGGCCGGGCAAGGGCGCCGCCGCCAACAACGTCGTCGGCGGCGAGGAGTCCGACGACAACGAGGACGACGAGATGGGGCCGCCGCACGTGGTGGCGGCGCGGCGGCACGCGCGGTCGTCGTCGGTGCTGGAGGGCGCCGGGAGGACGCTCAAGGGGCGCGACCTCCGCCGCGTCCGCAACGCCGTGCTCCGGCAGACCGGATTCCTCGACCTCTGAAGAATCCAAAGCATCCCATCGCCATCATCATATCTTGATTAGCCATTTCTCATCATCAGTTTTCCGGTGTGACTAAAAAAAAAAACTTTGT] [+] EMBL AK119700 [ACCTCGTTGCAATCGCTGGTCGCCGCCGCCGCCGCAGCCGTCGACGGCGAAGGGGAGATCAGAGCCAAAGGATTGATCCGTGGCTGCTCCGTGGGGGGCGATGGCGATGCCGCGGTCGCCGGGCGCGGGCTCGCTCCGGTTTCTTGGCCTCCTGAAGCAGCCGGAGTCGGGGCCCGACGGCGCGGCGCCGCCGTTCGAGCTCGACGAGAGCGACGTGGTGTGGCCGGCCGGCGGTGTCGGGGACGACGGTTACTGCTGCCCGGCGCCGCCACACCCGGAGGGCCCACCGCGCGCGCCCCGCCGCGCCCACACGGTGCCGCAGAGCTTCGGGCTGTCGTCGCTGCTCGCCAACGGGGGGCGCGGCGGCGGCAGCGACGACGGGCGTCAGGATGGAGTGGCCGTGCCCGTGAGGGCCGCGGCGGCGCCGGGTGGAGGCGCCGCGGCACCGAGGCGGTCGGCACCGGTGAGGGTCCCGATGTGGCCGGGCAAGGGCGCCGCCGCCAACAACGTCGTCGGCGGCGAGGAGTCCGACGACAACGAGGACGACGAGATGGTGCCGCCGCACGTGGTGGCGGCGCGGCGGCACGCGCGGTCGTCGTCGGTGCTGGAGGGCGCCGGGAGGACGCTCAAGGGGCGCGACCTCCGCCGCGTCCGCAACGCCGTGCTCCGGCAGACCGGATTCCTCGACCTCTGAAGAATCCAAAGCATCCCATCGCCATCATCATATCTTGATTAGCCATTTCTCATCATCAGTTTTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3936#0 -----------------------------------------------------------C 1 consensus_3936#1 ACCTCGTTGCAATCGCTGGTCGCCGCCGCCGCCGCAGCCGTCGACGGCGAAGGGGAGATC 60 * consensus_3936#0 GCGGCCACG---TCCACCCCAACCTCCCCTTCCGC---CGATGCCGGAGCGCCGCCACCT 55 consensus_3936#1 AGAGCCAAAGGATTGATCCGTGGCTGCTCCGTGGGGGGCGATGGCGATGCCGCGGTCGCC 120 **** * * ** ** * * * ***** ** ** ** * consensus_3936#0 CGCCGGAGACTCACCGTGCTGGTGATCATCCTCCGGACAACCCACCATGGAGCGCCTCCT 115 consensus_3936#1 GGGCGCGGGCTCGCTCCGGTT-TCTTGGCCTCCTGAAGCAGCCGGAGTCGGGGCCCGACG 179 * ** * *** * * * * * * * * * * ** * * * ** * consensus_3936#0 GCAC--TTCCGGCCCCCGAAACCGACCTCTGCCA-ATGCCGTTGCAG--CGGCGGCTACC 170 consensus_3936#1 GCGCGGCGCCGCCGTTCGAGCTCGACGAGAGCGACGTGGTGTGGCCGGCCGGCGGTGTCG 239 ** * *** * *** **** ** * ** ** ** * ****** * consensus_3936#0 GC--CGACGGCGAC--CTCCTCGAGCTCGACGTGCTCTG---GCCTGCATCCCGCGCCCC 223 consensus_3936#1 GGGACGACGGTTACTGCTGCCCGGCGCCGCCACACCCGGAGGGCCCACCGCGCGCGCCCC 299 * ****** ** ** * ** ** * * * * *** * * ******** consensus_3936#0 GG-GCCTCCTCGCGGCGCTCCCTGAGGAGGACGGGAAGCGGAGGAGGAAGCGCGGCGGGA 282 consensus_3936#1 GCCGCGCCCACACGGTGCCGCAGAGCTTCGGGCTGTCGTCGCTGCTCGCCAACGGGGGGC 359 * ** ** * *** ** * * * * * * *** *** consensus_3936#0 GCGGGAGCGGGAGCGTGGCCGTCCGATCCG-CGGCGCGGCCTATCCCGGAGACCGCCGCG 341 consensus_3936#1 GCGGCGGCGGCAGCGACGACGGGCGTCAGGATGGAGTGGCC-GTGCCCGTGAGGGCCGCG 418 **** **** **** * ** ** * ** * **** * ** * ** ****** consensus_3936#0 TTGACCCTGGTCCCGTCGTCGTCCGCGGCGGCGATGGCGAAGTCGGCGCCGGTGAGGATA 401 consensus_3936#1 GCGGCGCCGG----GTGGAGG--CGCCGCGGCACCGAGGCGGTCGGCACCGGTGAGGGTC 472 * * * ** ** * * *** ***** * * ****** ********* * consensus_3936#0 CCGTCGGAGGCGG-CGGCGGCGCGTAGGGGGGTGATGTGGGCGGCGCAGGCGGG--CGGC 458 consensus_3936#1 CCGATGTGGCCGGGCAAGGGCGCCGCCGCCAACAACGTCGTCGGCGGCGAGGAGTCCGAC 532 *** * * *** * ***** * * ** * ***** * * * ** * consensus_3936#0 GAGGACGGGGAGGCGGCCATGGTCCCGCCCCACGAGATCGTGGCGCGGCGCGCCGCGGCG 518 consensus_3936#1 GACAACGAGGACGACGAGATGGGGCCGCCGCACGTGGTGGCGGCGCGGCGGCACGCGCGG 592 ** *** *** * * **** ***** **** * * * ********* **** * consensus_3936#0 CACAGCTCGGTGCTGGAGGGCTCCGGGAGGACGCTCAAGGGGCGCGACCTCCACCGCGTC 578 consensus_3936#1 TCGTCGTCGGTGCTGGAGGGCGCCGGGAGGACGCTCAAGGGGCGCGACCTCCGCCGCGTC 652 *************** ****************************** ******* consensus_3936#0 CGCAACGCCGTCCTCCGCCGCACCGGCTTCCTCGACTGAGGCGAAGAATAAACGGCTTAT 638 consensus_3936#1 CGCAACGCCGTGCTCCGGCAGACCGGATTCCTCGACCTC--TGAAGAATCCAAAGCATCC 710 *********** ***** * ***** ********* ******* * ** * consensus_3936#0 GATGCTTACCTTCG-GCGCTAAATAGTTGTGACAGCACTCTTGGGGGGACCATTGCCCCT 697 consensus_3936#1 CATCGCCATCATCATATCTTGATTAGCCATTTC--TCATCATCAGTTTTCCGGTGTGACT 768 ** * * ** * * *** * * ** * * ** ** ** consensus_3936#0 CAGCAACACAATTCCTATAAGGAAACATATGGTATGCTCACTGCTCAGTTCACCTCATAG 757 consensus_3936#1 AAAAAAAAAAACTT-TGT------------------------------------------ 785 * ** * ** * * * consensus_3936#0 GTCTAGAACTTCTTGCTATCCCTTGGTTTTTTACGTAATAGAGGGAGTAGTTATGTTGCT 817 consensus_3936#1 ------------------------------------------------------------ consensus_3936#0 TCGTAACCAAAACTTGGGTGTTTGTGGTTATGGTAAAGGAGTTATGTACACATTTTTGTG 877 consensus_3936#1 ------------------------------------------------------------ consensus_3936#0 TGTTTTCCTGGCTTTGATTTATTGTTTTATCAATCCTCTCTTACCAAGGTTTTATTCAGA 937 consensus_3936#1 ------------------------------------------------------------ consensus_3936#0 CTATCTGA 945 consensus_3936#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||