cluster # 3937

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Oryza sativa
cluster # 3937 cluster # 3937 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3937#0 length = 989 sequences # 2

consensus_3937#1 length = 659 sequences # 1

consensusID : consensus_3937#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 989
fasta sequence

                              [CAGATCTTGAATAACAACTAGAAAAGCTTCATTAGCAGAGTGATCGACAAGGAAATTAAATGGCGTCGTCGTTGTTGTCCATGGCGATGTTCGTCGTGGTCCTGATGTGCGCCTCAGCAATGGCCGCCCAGGCGCGCCTCCCGCCGGGGTCTAGCCCGCTGGTGGCGGCGTGCACGGCGGGGCCGTTCTCCAAGCTGTGCGTCAAGGACCTGGGCCACCGCCTGCTGGACATCCAGACGGTGCTGACGTCGGTGTCGAACCACGGCGCCGCCATCGCCGGCGCGCCGGGGCAGGTGGACTTCAGGTCCCTGGTCGCCGTCGCCATGGAGGCCGCCACGGAGTCCGGCGCGGTGGCGGCGACGGTGTTCGAGGGGAAGCTCCCCGGGTTCAACAAGTCCGTGCCGGACTTCAAGGCCTGCCTCGACAACTGCAGCGTGACGGTGTCGAGCGCCATGAAGGAGATCCACGGCGCCGCCGCCGCGCTCAAGGCCGGCGACGACGAGGTCGCCAAGACGCTCGTGCTTCGCGCCATCAACGACGTCACCATGTGAACGTACAGCTGCAGGGAGCTCAACGGCGACATGGCGGTCATCCTGGAGCACAGCCTCGTCCAGTTCCAGAAGATGATGAGGATCGCCGTCAACTTCATCAGCAAGATGAAGAAGTCACCGCTTCCTCCTCCTCCTCGTTCTACTCCTCCTGCTCCTCCTACTCCTCATCGGCTGCACTGAATATGCTTGCTTCTTCACTTCAGTTCGCTGGACTGGATTATCCAGCGATTATCCCTTAATTAAGAGAGCCCCCTAGTTAACCCTCTTCAGTACGTACGTTCTCTGGTTGCGATCATAGTTAGCTAGCCTTCGTTTTGATTTTTCAGAGTTGAGTACCCTAATTTCTTCCCCAGCTGTATCCCGTCTTCGTTTTTTTCCCTCTCTCTTTTTGTTGGTTTAGCTCACGTGAATAAACTGCAAGTAAAGTAAATATTGTTA]

[+] EMBL AK119707             [CAGATCTTGAATAACAACTAGAAAAGCTTCATTAGCAGAGTGATCGACAAGGAAATTAAATGGCGTCGTCGTTGTTGTCCATGGCGATGTTCGTCGTGGTCCTGATGTGCGCCTCAGCAATGGCCGCCCAGGCGCGCCTCCCGCCGGGGTCTAGCCCGCTGGTGGCGGCGTGCACGGCGGGGCCGTTCTCCAAGCTGTGCGTCAAGGACCTGGGCCACCGCCTGCTGGACATCCAGACGGTGCTGACGTCGGTGTCGAACCACGGCGCCGCCATCGCCGGCGCGCCGGGGCAGGTGGACTTCAGGTCCCTGGTCGCCGTCGCCATGGAGGCCGCCACGGAGTCCGGCGCGGTGGCGGCGACGGTGTTCGAGGGGAAGCTCCCCGGGTTCAACAAGTCCGTGCCGGACTTCAAGGCCTGCCTCGACAACTGCAGCGTGACGGTGTCGAGCGCCATGAAGGAGATCCACGGCGCCGCCGCCGCGCTCAAGGCCGGCGACGACGAGGTCGCCAAGACGCTCGTGCTTCGCGCCATCAACGACGTCACCATGTGAACGTACAGCTGCAGGGAGCTCAACGGCGACATGGCGGTCATCCTGGAGCACAGCCTCGTCCAGTTCCAGAAGATGATGAGGATCGCCGTCAACTTCATCAGCAAGATGAAGAAGTCACCGCTTCCTCCTCCTCCTCGTTCTACTCCTCCTGCTCCTCCTACTCCTCATCGGCTGCACTGAATATGCTTGCTTCTTCACTTCAGTTCGCTGGACTGGATTATCCAGCGATTATCCCTTAATTAAGAGAGCCCCCTAGTTAACCCTCTTCAGTACGTACGTTCTCTGGTTGCGATCATAGTTAGCTAGCCTTCGTTTTGATTTTTCAGAGTTGAGTACCCTAATTTCTTCCCCAGCTGTATCCCGTCTTCGTTTTTTTCCCTCTCTCTTTTTGTTGGTTTAGCTCACGTGAATAAACTGCAAGTAAAGTAAATATTGTTA]
[+] EMBL AK071298             [         AATAACAACTAGAAAAGCTTCATTAGCAGAGTGATCGACAAGGAAATTAAATGGCGTCGTCGTTGTTGTCCATGGCGATGTTCGTCGTGGTCCTGATGTGCGCCTCAGCAATGGCCGCCCAGGCGCGCCTCCCGCCGGGGTCTAGCCCGCTGGTGGCGGCGTGCACGGCGGGGCCGTTCTCCAAGCTGTGCGTCAAGGACCTGGGCCACCGCCTGCTGGACATCCAGACGGTGCTGACGTCGGTGTCGAACCACGGCGCCGCCATCGCCGGCGCGCCGGGGCAGGTGGACTTCAGGTCCCTGGTCGCCGTCGCCATGGAGGCCGCCACGGAGTCCGGCGCGGTGGCGGCGACGGTGTTCGAGGGGAAGCTCCCCGGGTTCAACAAGTCCGTGCCGGACTTCAAGGCCTGCCTCGACAACTGCAGCGTGACGGTGTCGAGCGCCATGAAGGAGATCCACGGCGCCGCCGCCGCGCTCAAGGCCGGCGACGACGAGGTCGCCAAGACGCTCGTGCTTCGCGCCATCAACGACGTCACCATGTGAACGTACAGCTGCAGGGAGCTCAACGGCGACATGGCGGTCATCCTGGAGCACAGCCTCGTCCAGTTCCAGAAGATGATGAGGATCGCCGTCAACTTCATCAGCAAGATGAAGAAGTCACCGCTTCCTCCTCCTCCTCGTTCTACTCCTCCTGCTCCTCCTACTCCTCATCGGCTGCACTGAATATGCTTGCTTCTTCACTTCAGTTCGCTGGACTGGATTATCCAGCGATTATCCCTTAATTAAGAGAGCCCCCTAGTTAACCCTCTTCAGTACGTACGTTCTCTGGTTGCGATCATAGTTAGCTAGCCTTCGTTTTGATTTTTCAGAATTGAGTACCCTA                                                                                                  ]




>consensus_3937#0
CAGATCTTGAATAACAACTAGAAAAGCTTCATTAGCAGAGTGATCGACAAGGAAATTAAA
TGGCGTCGTCGTTGTTGTCCATGGCGATGTTCGTCGTGGTCCTGATGTGCGCCTCAGCAA
TGGCCGCCCAGGCGCGCCTCCCGCCGGGGTCTAGCCCGCTGGTGGCGGCGTGCACGGCGG
GGCCGTTCTCCAAGCTGTGCGTCAAGGACCTGGGCCACCGCCTGCTGGACATCCAGACGG
TGCTGACGTCGGTGTCGAACCACGGCGCCGCCATCGCCGGCGCGCCGGGGCAGGTGGACT
TCAGGTCCCTGGTCGCCGTCGCCATGGAGGCCGCCACGGAGTCCGGCGCGGTGGCGGCGA
CGGTGTTCGAGGGGAAGCTCCCCGGGTTCAACAAGTCCGTGCCGGACTTCAAGGCCTGCC
TCGACAACTGCAGCGTGACGGTGTCGAGCGCCATGAAGGAGATCCACGGCGCCGCCGCCG
CGCTCAAGGCCGGCGACGACGAGGTCGCCAAGACGCTCGTGCTTCGCGCCATCAACGACG
TCACCATGTGAACGTACAGCTGCAGGGAGCTCAACGGCGACATGGCGGTCATCCTGGAGC
ACAGCCTCGTCCAGTTCCAGAAGATGATGAGGATCGCCGTCAACTTCATCAGCAAGATGA
AGAAGTCACCGCTTCCTCCTCCTCCTCGTTCTACTCCTCCTGCTCCTCCTACTCCTCATC
GGCTGCACTGAATATGCTTGCTTCTTCACTTCAGTTCGCTGGACTGGATTATCCAGCGAT
TATCCCTTAATTAAGAGAGCCCCCTAGTTAACCCTCTTCAGTACGTACGTTCTCTGGTTG
CGATCATAGTTAGCTAGCCTTCGTTTTGATTTTTCAGAGTTGAGTACCCTAATTTCTTCC
CCAGCTGTATCCCGTCTTCGTTTTTTTCCCTCTCTCTTTTTGTTGGTTTAGCTCACGTGA
ATAAACTGCAAGTAAAGTAAATATTGTTA

consensusID : consensus_3937#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence

                              [GCCCAGGCGCGCTCCCCCCGGGGTCTAGCCCGGGTTCAACAAGTCCGTGCCGGATTCCAAGGCCTGCCTCGCCAACTGCAGCGTGACGGTGTCGAGCGCCATGAAGGAGATCCACGGGGCCGCCCCCGCGCTCAAGGCCGGCGACGACGACGTCGCCAAGACGCTGGTGCTGCGCGCCATCAACGACGTCACCATGTGCACGTACAGCTGCAGGGAGCTCAACGGCGACATGGCGGTCATCCTGGAGCACAGCCTCGTCCAGTTCCAGAAGATGATGAGGATTGCCGTCAACTTCATCAGCAAGATGAAGAAGTCACCGCTTCCTCCTCCTCCTCGTTTTACTCCTCCTGCTCCTCCTACTCCTAATGGGCTGCACTGAATATGCATGCTTTTTCACTTCACTTCGCTGGACTGGATTAATCACGTACCAGGCCAGTTCGTAGCAAATAATTATCGATCCAGCGATTATCCCTTAATTAAGAGAGCCCCCCCTAGTTGCGATCATAGTTAGCCTTCGTTTTGATTTATCAGAGTTGAGTACCCTAATTTCTTCCCCTGCTGTATCCCGTCTTCGTTTTTTCCCTCTCTTTTTTTGTTGGTTTAGCTCACGTGAATAAACTGCAAGTAAAGTAAATATTGTTATTAAAAAAAAAAAAAAA]

[-] EMBL CA760474             [GCCCAGGCGCGCTCCCCCCGGGGTCTAGCCCGGGTTCAACAAGTCCGTGCCGGATTCCAAGGCCTGCCTCGCCAACTGCAGCGTGACGGTGTCGAGCGCCATGAAGGAGATCCACGGGGCCGCCCCCGCGCTCAAGGCCGGCGACGACGACGTCGCCAAGACGCTGGTGCTGCGCGCCATCAACGACGTCACCATGTGCACGTACAGCTGCAGGGAGCTCAACGGCGACATGGCGGTCATCCTGGAGCACAGCCTCGTCCAGTTCCAGAAGATGATGAGGATTGCCGTCAACTTCATCAGCAAGATGAAGAAGTCACCGCTTCCTCCTCCTCCTCGTTTTACTCCTCCTGCTCCTCCTACTCCTAATGGGCTGCACTGAATATGCATGCTTTTTCACTTCACTTCGCTGGACTGGATTAATCACGTACCAGGCCAGTTCGTAGCAAATAATTATCGATCCAGCGATTATCCCTTAATTAAGAGAGCCCCCCCTAGTTGCGATCATAGTTAGCCTTCGTTTTGATTTATCAGAGTTGAGTACCCTAATTTCTTCCCCTGCTGTATCCCGTCTTCGTTTTTTCCCTCTCTTTTTTTGTTGGTTTAGCTCACGTGAATAAACTGCAAGTAAAGTAAATATTGTTATTAAAAAAAAAAAAAAA]




>consensus_3937#1
GCCCAGGCGCGCTCCCCCCGGGGTCTAGCCCGGGTTCAACAAGTCCGTGCCGGATTCCAA
GGCCTGCCTCGCCAACTGCAGCGTGACGGTGTCGAGCGCCATGAAGGAGATCCACGGGGC
CGCCCCCGCGCTCAAGGCCGGCGACGACGACGTCGCCAAGACGCTGGTGCTGCGCGCCAT
CAACGACGTCACCATGTGCACGTACAGCTGCAGGGAGCTCAACGGCGACATGGCGGTCAT
CCTGGAGCACAGCCTCGTCCAGTTCCAGAAGATGATGAGGATTGCCGTCAACTTCATCAG
CAAGATGAAGAAGTCACCGCTTCCTCCTCCTCCTCGTTTTACTCCTCCTGCTCCTCCTAC
TCCTAATGGGCTGCACTGAATATGCATGCTTTTTCACTTCACTTCGCTGGACTGGATTAA
TCACGTACCAGGCCAGTTCGTAGCAAATAATTATCGATCCAGCGATTATCCCTTAATTAA
GAGAGCCCCCCCTAGTTGCGATCATAGTTAGCCTTCGTTTTGATTTATCAGAGTTGAGTA
CCCTAATTTCTTCCCCTGCTGTATCCCGTCTTCGTTTTTTCCCTCTCTTTTTTTGTTGGT
TTAGCTCACGTGAATAAACTGCAAGTAAAGTAAATATTGTTATTAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3937#0      CAGATCTTGAATAACAACTAGAAAAGCTTCATTAGCAGAGTGATCGACAAGGAAATTAAA 60
consensus_3937#1      ------------------------------------------------------------
                                                                                  

consensus_3937#0      TGGCGTCGTCGTTGTTGTCCATGGCGATGTTCGTCGTGGTCCTGATGTGCGCCTCAGCAA 120
consensus_3937#1      ------------------------------------------------------------
                                                                                  

consensus_3937#0      TGGCCGCCCAGGCGCGCCTCCCGCCGGGGTCTAGCCCGCTGGTGGCGGCGTGCACGGCGG 180
consensus_3937#1      ------------------------------------------------------------
                                                                                  

consensus_3937#0      GGCCGTTCTCCAAGCTGTGCGTCAAGGACCTGGGCCACCGCCTGCTGGACATCCAGACGG 240
consensus_3937#1      ------------------------------------------------------------
                                                                                  

consensus_3937#0      TGCTGACGTCGGTGTCGAACCACGGCGCCGCCATCGCCGGCGCGCCGGGGCAGGTGGACT 300
consensus_3937#1      ------------------------------------------------------------
                                                                                  

consensus_3937#0      TCAGGTCCCTGGTCGCCGTCGCCATGGAGGCCGCCACGGAGTCCGGCGCGGTGGCGGCGA 360
consensus_3937#1      --------------------------------------------------GCCCAGGCG- 9
                                                                        *    **** 

consensus_3937#0      CGGTGTTCGAGGGGAAGCTCCCCGGGTTCAACAAGTCCGTGCCGGACTTCAAGGCCTGCC 420
consensus_3937#1      CGCTCCCCCCGGGGTC-TAGCCCGGGTTCAACAAGTCCGTGCCGGATTCCAAGGCCTGCC 68
                      ** *   *  ****      ************************** * ***********

consensus_3937#0      TCGACAACTGCAGCGTGACGGTGTCGAGCGCCATGAAGGAGATCCACGGCGCCGCCGCCG 480
consensus_3937#1      TCGCCAACTGCAGCGTGACGGTGTCGAGCGCCATGAAGGAGATCCACGGGGCCGCCCCCG 128
                      *** ********************************************* ****** ***

consensus_3937#0      CGCTCAAGGCCGGCGACGACGAGGTCGCCAAGACGCTCGTGCTTCGCGCCATCAACGACG 540
consensus_3937#1      CGCTCAAGGCCGGCGACGACGACGTCGCCAAGACGCTGGTGCTGCGCGCCATCAACGACG 188
                      ********************** ************** ***** ****************

consensus_3937#0      TCACCATGTGAACGTACAGCTGCAGGGAGCTCAACGGCGACATGGCGGTCATCCTGGAGC 600
consensus_3937#1      TCACCATGTGCACGTACAGCTGCAGGGAGCTCAACGGCGACATGGCGGTCATCCTGGAGC 248
                      ********** *************************************************

consensus_3937#0      ACAGCCTCGTCCAGTTCCAGAAGATGATGAGGATCGCCGTCAACTTCATCAGCAAGATGA 660
consensus_3937#1      ACAGCCTCGTCCAGTTCCAGAAGATGATGAGGATTGCCGTCAACTTCATCAGCAAGATGA 308
                      ********************************** *************************

consensus_3937#0      AGAAGTCACCGCTTCCTCCTCCTCCTCGTTCTACTCCTCCTGCTCCTCCTACTCCTCATC 720
consensus_3937#1      AGAAGTCACCGCTTCCTCCTCCTCCTCGTTTTACTCCTCCTGCTCCTCCTACTCCTAATG 368
                      ****************************** ************************* ** 

consensus_3937#0      GGCTGCACTGAATATGCTTGCTTCTTCACTTCAGTTCGCTGGACTGGATTATCCAGC--- 777
consensus_3937#1      GGCTGCACTGAATATGCATGCTTTTTCACTTCACTTCGCTGGACTGGATTAATCACGTAC 428
                      ***************** ***** ********* *****************  **     

consensus_3937#0      --GATTATCCCTTAATTAAGAG-----AGCCCCCTAGTTAACCCTCTTCAGTACGTACGT 830
consensus_3937#1      CAGGCCAGTTCGTAGCAAATAATTATCGATCCAGCGATTATCCCTTAATTAAGAGAGCCC 488
                        *   *   * **   ** *         **     *** ****         *  *  

consensus_3937#0      TCTCTGGTTGCGATCATAGTTAGCTAGCCTTCGTTTTGATTTTTCAGAGTTGAGTACCCT 890
consensus_3937#1      CCCCTAGTTGCGATCATAGTTAG----CCTTCGTTTTGATTTATCAGAGTTGAGTACCCT 544
                       * ** *****************    *************** *****************

consensus_3937#0      AATTTCTTCCCCAGCTGTATCCCGTCTTCGTTTTTTTCCCTCTCTCTTTTTGTTGGTTTA 950
consensus_3937#1      AATTTCTTCCCCTGCTGTATCCCGTCTTCGTTTTTT-CCCTCTCTTTTTTTGTTGGTTTA 603
                      ************ *********************** ******** **************

consensus_3937#0      GCTCACGTGAATAAACTGCAAGTAAAGTAAATATTGTTA----------------- 989
consensus_3937#1      GCTCACGTGAATAAACTGCAAGTAAAGTAAATATTGTTATTAAAAAAAAAAAAAAA 659
                      ***************************************