These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1553 fasta sequence [TGACCACGCAGCAGTTACCGTGCTTGATCGCTGGAATGTTGCCATCAAAGAGAAGAATGGAGCAGAAGATCAATGTACCAAGCAAGTTAAATTTATGACTAATTATATAGGTGTTGGATGTGATGCCAAGGTTGCATATGACTTCCACACTACGAGAGAGGAAAAACCAGATAAATTTTGCAGCCAGTTTGTCAACAAGCTGATATATGCTAGAGAAGGCGCTAAGGATATCATGGATAGGTCATGTTCTGATTTACCATGGCATGTTAGTCTTGAAGTTGATGGAAAGAACGTCGAAATTCCAGAGGACGCAGAAGGTGTGATTGTTCTGAACATTCCTAGCTACATGGGCGGTGTTGATCTTTGGCAAAACGACAATGAACATGATGATGATTTTGGTTTGCAATCCATGCATGACAAAATGCTTGAGGTTGTCTGTATATCTGGGACGTGGCATCTAGGAAAACTGCAGGTGGGACTCTCTAGAGCACACAGGCTAGCCCAAGGGAAAGTTATAAGGTTGCATCTCCACAGTTCATTCCCTGTTCAGGTTGATGGTGAGCCATGGATCCAGCCACCCGGGTGCCTTGAGATATCTCATCGTGGGCAGGTACTTTATCTCTCTAGATGAACTAGATACGCATGGAGAGTTTATATATTATCTTTTTTACACATGAAGATGCTTCTTTATGTACTGGTGGAAAATGATTTTATTCGCGCTTTGTGAAATAGTCTGTGGTTTTCTTGAGAACTATAAGGTAGCTGTGACTTCAATTAGTATTTCCAAATTTCTGTTGTATATTATGTGATCTTAAAGCATCCTATTTTGTGTTAGTCAAATCATGATATACAACCTACAAAGTGGAGTTCATTGAACTGACAACCAACTTCATGCCTGTTTCAGCACTCTGCATCTGATATTCACATACACAATCATATTGAAGATGTATGTAAAACTTATTACAATGGCCCAACTGACGATGTCTTGCTCTTGTGCTCAGATGTTCATGTTGAGGAGGACATCCGAAGAACCCACCGGGCATGCCGCTGCTATCATGAGCGAGGTCCTCATGAATGCAGAGTGCAATGGTGTGATTGATGCTGCTCAGAAGAGATTGCTCCTTCATGAGATCGCACTACGTTTGTCCTCCTGACAGTCCAGCCCGTCCCCTCCATCTCTTACTCGCCGTACTAATGCTGATACCGAATCCACTCCCTTTTGTGTTGAGAAGTTCCCCTTGCACAGGTGAGAAAGGCATACGGTAGGATGTTACACAGAGGAAATAGAAGATTTCCTGTTTTCATGATTTGACGTATACATACATAGATTACCTTTTCACACTAGGTGATCTGCTTCTTTGTTTACTGGGCTGTGGGCTCATCAAGGTGAGTATTCACCAGTTTACGAAGAGTTTTGTAGCGCGTAGAAACACTGTTACTGCATGTAGGGTTCAATGAGCATTGTAAGCTGTATCTAGGGTGTATCGGTGGCCTATACAAAAGGTATGAATGTAAGTTTAATCCCTCGTTTTTTGACAGAAGAAAGATTGTGG] [+] EMBL AK060284 [TGACCACGCAGCAGTTACCGTGCTTGATCGCTGGAATGTTGCCATCAAAGAGAAGAATGGAGCAGAAGATCAATGTACCAAGCAAGTTAAATTTATGACTAATTATATAGGTGTTGGATGTGATGCCAAGGTTGCATATGACTTCCACACTACGAGAGAGGAAAAACCAGATAAATTTTGCAGCCAGTTTGTCAACAAGCTGATATATGCTAGAGAAGGCGCTAAGGATATCATGGATAGGTCATGTTCTGATTTACCATGGCATGTTAGTCTTGAAGTTGATGGAAAGAACGTCGAAATTCCAGAGGACGCAGAAGGTGTGATTGTTCTGAACATTCCTAGCTACATGGGCGGTGTTGATCTTTGGCAAAACGACAATGAACATGATGATGATTTTGGTTTGCAATCCATGCATGACAAAATGCTTGAGGTTGTCTGTATATCTGGGACGTGGCATCTAGGAAAACTGCAGGTGGGACTCTCTAGAGCACACAGGCTAGCCCAAGGGAAAGTTATAAGGTTGCATCTCCACAGTTCATTCCCTGTTCAGGTTGATGGTGAGCCATGGATCCAGCCACCCGGGTGCCTTGAGATATCTCATCGTGGGCAGGTACTTTATCTCTCTAGATGAACTAGATACGCATGGAGAGTTTATATATTATCTTTTTTACACATGAAGATGCTTCTTTATGTACTGGTGGAAAATGATTTTATTCGCGCTTTGTGAAATAGTCTGTGGTTTTCTTGAGAACTATAAGGTAGCTGTGACTTCAATTAGTATTTCCAAATTTCTGTTGTATATTATGTGATCTTAAAGCATCCTATTTTGTGTTAGTCAAATCATGATATACAACCTACAAAGTGGAGTTCATTGAACTGACAACCAACTTCATGCCTGTTTCAGCACTCTGCATCTGATATTCACATACACAATCATATTGAAGATGTATGTAAAACTTATTACAATGGCCCAACTGACGATGTCTTGCTCTTGTGCTCAGATGTTCATGTTGAGGAGGACATCCGAAGAACCCACCGGGCATGCCGCTGCTATCATGAGCGAGGTCCTCATGAATGCAGAGTGCAATGGTGTGATTGATGCTGCTCAGAAGAGATTGCTCCTTCATGAGATCGCACTACGTTTGTCCTCCTGACAGTCCAGCCCGTCCCCTCCATCTCTTACTCGCCGTACTAATGCTGATACCGAATCCACTCCCTTTTGTGTTGAGAAGTTCCCCTTGCACAGGTGAGAAAGGCATACGGTAGGATGTTACACAGAGGAAATAGAAGATTTCCTGTTTTCATGATTTGACGTATACATACATAGATTACCTTTTCACACTAGGTGATCTGCTTCTTTGTTTACTGGGCTGTGGGCTCATCAAGGTGAGTATTCACCAGTTTACGAAGAGTTTTGTAGCGCGTAGAAACACTGTTACTGCATGTAGGGTTCAATGAGCATTGTAAGCTGTATCTAGGGTGTATCGGTGGCCTATACAAAAGGTATGAATGTAAGTTTAATCCCTCGTTTTTTGACAGAAGAAAGATTGTGG] consensusID : consensus_394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence [CCGTACTAATGCTGATACCGAATCCATACCCTTTTGTGTTGAGAAGTTCCCNTTGNCACAGGTGTAGAAAGGNCATACGGTAGGATGTTACACAGAGGAAATAGAAGATTTCCTGTTTTCATGATTTGACGTATACATACATAGATTACCTTTTCACACTAGGTGATCTGCTTCTTTGTTTACTGGGCTGTGGGCTCATCAAGGTGAGTATTCACCAGTTTACGAAGAGTTTTNTAGCGCGTAGAAACACTGTTACTGCATGTAGGGTTCAATGAGCATTGTAAGCTGTATCTAGGGTGTATCGGTGGCCTATACAAAAGGTATGAATGTAAGTTTAATCCCTNGTTTTTTGNCNGNNNNANNNNNNNNN] [+] EMBL C97330 [CCGTACTAATGCTGATACCGAATCCATACCCTTTTGTGTTGAGAAGTTCCCNTTGNCACAGGTGTAGAAAGGNCATACGGTAGGATGTTACACAGAGGAAATAGAAGATTTCCTGTTTTCATGATTTGACGTATACATACATAGATTACCTTTTCACACTAGGTGATCTGCTTCTTTGTTTACTGGGCTGTGGGCTCATCAAGGTGAGTATTCACCAGTTTACGAAGAGTTTTNTAGCGCGTAGAAACACTGTTACTGCATGTAGGGTTCAATGAGCATTGTAAGCTGTATCTAGGGTGTATCGGTGGCCTATACAAAAGGTATGAATGTAAGTTTAATCCCTNGTTTTTTGNCNGNNNNANNNNNNNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_394#0 TGACCACGCAGCAGTTACCGTGCTTGATCGCTGGAATGTTGCCATCAAAGAGAAGAATGG 60 consensus_394#1 ------------------------------------------------------------ consensus_394#0 AGCAGAAGATCAATGTACCAAGCAAGTTAAATTTATGACTAATTATATAGGTGTTGGATG 120 consensus_394#1 ------------------------------------------------------------ consensus_394#0 TGATGCCAAGGTTGCATATGACTTCCACACTACGAGAGAGGAAAAACCAGATAAATTTTG 180 consensus_394#1 ------------------------------------------------------------ consensus_394#0 CAGCCAGTTTGTCAACAAGCTGATATATGCTAGAGAAGGCGCTAAGGATATCATGGATAG 240 consensus_394#1 ------------------------------------------------------------ consensus_394#0 GTCATGTTCTGATTTACCATGGCATGTTAGTCTTGAAGTTGATGGAAAGAACGTCGAAAT 300 consensus_394#1 ------------------------------------------------------------ consensus_394#0 TCCAGAGGACGCAGAAGGTGTGATTGTTCTGAACATTCCTAGCTACATGGGCGGTGTTGA 360 consensus_394#1 ------------------------------------------------------------ consensus_394#0 TCTTTGGCAAAACGACAATGAACATGATGATGATTTTGGTTTGCAATCCATGCATGACAA 420 consensus_394#1 ------------------------------------------------------------ consensus_394#0 AATGCTTGAGGTTGTCTGTATATCTGGGACGTGGCATCTAGGAAAACTGCAGGTGGGACT 480 consensus_394#1 ------------------------------------------------------------ consensus_394#0 CTCTAGAGCACACAGGCTAGCCCAAGGGAAAGTTATAAGGTTGCATCTCCACAGTTCATT 540 consensus_394#1 ------------------------------------------------------------ consensus_394#0 CCCTGTTCAGGTTGATGGTGAGCCATGGATCCAGCCACCCGGGTGCCTTGAGATATCTCA 600 consensus_394#1 ------------------------------------------------------------ consensus_394#0 TCGTGGGCAGGTACTTTATCTCTCTAGATGAACTAGATACGCATGGAGAGTTTATATATT 660 consensus_394#1 ------------------------------------------------------------ consensus_394#0 ATCTTTTTTACACATGAAGATGCTTCTTTATGTACTGGTGGAAAATGATTTTATTCGCGC 720 consensus_394#1 ------------------------------------------------------------ consensus_394#0 TTTGTGAAATAGTCTGTGGTTTTCTTGAGAACTATAAGGTAGCTGTGACTTCAATTAGTA 780 consensus_394#1 ------------------------------------------------------------ consensus_394#0 TTTCCAAATTTCTGTTGTATATTATGTGATCTTAAAGCATCCTATTTTGTGTTAGTCAAA 840 consensus_394#1 ------------------------------------------------------------ consensus_394#0 TCATGATATACAACCTACAAAGTGGAGTTCATTGAACTGACAACCAACTTCATGCCTGTT 900 consensus_394#1 ------------------------------------------------------------ consensus_394#0 TCAGCACTCTGCATCTGATATTCACATACACAATCATATTGAAGATGTATGTAAAACTTA 960 consensus_394#1 ------------------------------------------------------------ consensus_394#0 TTACAATGGCCCAACTGACGATGTCTTGCTCTTGTGCTCAGATGTTCATGTTGAGGAGGA 1020 consensus_394#1 ------------------------------------------------------------ consensus_394#0 CATCCGAAGAACCCACCGGGCATGCCGCTGCTATCATGAGCGAGGTCCTCATGAATGCAG 1080 consensus_394#1 ------------------------------------------------------------ consensus_394#0 AGTGCAATGGTGTGATTGATGCTGCTCAGAAGAGATTGCTCCTTCATGAGATCGCACTAC 1140 consensus_394#1 ------------------------------------------------------------ consensus_394#0 GTTTGTCCTCCTGACAGTCCAGCCCGTCCCCTCCATCTCTTACTCGCCGTACTAATGCTG 1200 consensus_394#1 ----------------------------------------------CCGTACTAATGCTG 14 ************** consensus_394#0 ATACCGAATCCACTCCCTTTTGTGTTGAGAAGTTCCCCTTGC-ACAGGTG--AGAAAGGC 1257 consensus_394#1 ATACCGAATCCATACCCTTTTGTGTTGAGAAGTTCCCNTTGNCACAGGTGTAGAAAGGNC 74 ************ *********************** *** ******* ** * * consensus_394#0 ATACGGTAGGATGTTACACAGAGGAAATAGAAGATTTCCTGTTTTCATGATTTGACGTAT 1317 consensus_394#1 ATACGGTAGGATGTTACACAGAGGAAATAGAAGATTTCCTGTTTTCATGATTTGACGTAT 134 ************************************************************ consensus_394#0 ACATACATAGATTACCTTTTCACACTAGGTGATCTGCTTCTTTGTTTACTGGGCTGTGGG 1377 consensus_394#1 ACATACATAGATTACCTTTTCACACTAGGTGATCTGCTTCTTTGTTTACTGGGCTGTGGG 194 ************************************************************ consensus_394#0 CTCATCAAGGTGAGTATTCACCAGTTTACGAAGAGTTTTGTAGCGCGTAGAAACACTGTT 1437 consensus_394#1 CTCATCAAGGTGAGTATTCACCAGTTTACGAAGAGTTTTNTAGCGCGTAGAAACACTGTT 254 *************************************** ******************** consensus_394#0 ACTGCATGTAGGGTTCAATGAGCATTGTAAGCTGTATCTAGGGTGTATCGGTGGCCTATA 1497 consensus_394#1 ACTGCATGTAGGGTTCAATGAGCATTGTAAGCTGTATCTAGGGTGTATCGGTGGCCTATA 314 ************************************************************ consensus_394#0 CAAAAGGTATGAATGTAAGTTTAATCCCTCGTTTTTTGACAGAAGAAAGATTGTGG 1553 consensus_394#1 CAAAAGGTATGAATGTAAGTTTAATCCCTNGTTTTTTGNCNGNNNNANNNNNNNNN 370 ***************************** ******** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||