cluster # 394

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Oryza sativa
cluster # 394 cluster # 394 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_394#0 length = 1553 sequences # 1

consensus_394#1 length = 370 sequences # 1

consensusID : consensus_394#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1553
fasta sequence

                              [TGACCACGCAGCAGTTACCGTGCTTGATCGCTGGAATGTTGCCATCAAAGAGAAGAATGGAGCAGAAGATCAATGTACCAAGCAAGTTAAATTTATGACTAATTATATAGGTGTTGGATGTGATGCCAAGGTTGCATATGACTTCCACACTACGAGAGAGGAAAAACCAGATAAATTTTGCAGCCAGTTTGTCAACAAGCTGATATATGCTAGAGAAGGCGCTAAGGATATCATGGATAGGTCATGTTCTGATTTACCATGGCATGTTAGTCTTGAAGTTGATGGAAAGAACGTCGAAATTCCAGAGGACGCAGAAGGTGTGATTGTTCTGAACATTCCTAGCTACATGGGCGGTGTTGATCTTTGGCAAAACGACAATGAACATGATGATGATTTTGGTTTGCAATCCATGCATGACAAAATGCTTGAGGTTGTCTGTATATCTGGGACGTGGCATCTAGGAAAACTGCAGGTGGGACTCTCTAGAGCACACAGGCTAGCCCAAGGGAAAGTTATAAGGTTGCATCTCCACAGTTCATTCCCTGTTCAGGTTGATGGTGAGCCATGGATCCAGCCACCCGGGTGCCTTGAGATATCTCATCGTGGGCAGGTACTTTATCTCTCTAGATGAACTAGATACGCATGGAGAGTTTATATATTATCTTTTTTACACATGAAGATGCTTCTTTATGTACTGGTGGAAAATGATTTTATTCGCGCTTTGTGAAATAGTCTGTGGTTTTCTTGAGAACTATAAGGTAGCTGTGACTTCAATTAGTATTTCCAAATTTCTGTTGTATATTATGTGATCTTAAAGCATCCTATTTTGTGTTAGTCAAATCATGATATACAACCTACAAAGTGGAGTTCATTGAACTGACAACCAACTTCATGCCTGTTTCAGCACTCTGCATCTGATATTCACATACACAATCATATTGAAGATGTATGTAAAACTTATTACAATGGCCCAACTGACGATGTCTTGCTCTTGTGCTCAGATGTTCATGTTGAGGAGGACATCCGAAGAACCCACCGGGCATGCCGCTGCTATCATGAGCGAGGTCCTCATGAATGCAGAGTGCAATGGTGTGATTGATGCTGCTCAGAAGAGATTGCTCCTTCATGAGATCGCACTACGTTTGTCCTCCTGACAGTCCAGCCCGTCCCCTCCATCTCTTACTCGCCGTACTAATGCTGATACCGAATCCACTCCCTTTTGTGTTGAGAAGTTCCCCTTGCACAGGTGAGAAAGGCATACGGTAGGATGTTACACAGAGGAAATAGAAGATTTCCTGTTTTCATGATTTGACGTATACATACATAGATTACCTTTTCACACTAGGTGATCTGCTTCTTTGTTTACTGGGCTGTGGGCTCATCAAGGTGAGTATTCACCAGTTTACGAAGAGTTTTGTAGCGCGTAGAAACACTGTTACTGCATGTAGGGTTCAATGAGCATTGTAAGCTGTATCTAGGGTGTATCGGTGGCCTATACAAAAGGTATGAATGTAAGTTTAATCCCTCGTTTTTTGACAGAAGAAAGATTGTGG]

[+] EMBL AK060284             [TGACCACGCAGCAGTTACCGTGCTTGATCGCTGGAATGTTGCCATCAAAGAGAAGAATGGAGCAGAAGATCAATGTACCAAGCAAGTTAAATTTATGACTAATTATATAGGTGTTGGATGTGATGCCAAGGTTGCATATGACTTCCACACTACGAGAGAGGAAAAACCAGATAAATTTTGCAGCCAGTTTGTCAACAAGCTGATATATGCTAGAGAAGGCGCTAAGGATATCATGGATAGGTCATGTTCTGATTTACCATGGCATGTTAGTCTTGAAGTTGATGGAAAGAACGTCGAAATTCCAGAGGACGCAGAAGGTGTGATTGTTCTGAACATTCCTAGCTACATGGGCGGTGTTGATCTTTGGCAAAACGACAATGAACATGATGATGATTTTGGTTTGCAATCCATGCATGACAAAATGCTTGAGGTTGTCTGTATATCTGGGACGTGGCATCTAGGAAAACTGCAGGTGGGACTCTCTAGAGCACACAGGCTAGCCCAAGGGAAAGTTATAAGGTTGCATCTCCACAGTTCATTCCCTGTTCAGGTTGATGGTGAGCCATGGATCCAGCCACCCGGGTGCCTTGAGATATCTCATCGTGGGCAGGTACTTTATCTCTCTAGATGAACTAGATACGCATGGAGAGTTTATATATTATCTTTTTTACACATGAAGATGCTTCTTTATGTACTGGTGGAAAATGATTTTATTCGCGCTTTGTGAAATAGTCTGTGGTTTTCTTGAGAACTATAAGGTAGCTGTGACTTCAATTAGTATTTCCAAATTTCTGTTGTATATTATGTGATCTTAAAGCATCCTATTTTGTGTTAGTCAAATCATGATATACAACCTACAAAGTGGAGTTCATTGAACTGACAACCAACTTCATGCCTGTTTCAGCACTCTGCATCTGATATTCACATACACAATCATATTGAAGATGTATGTAAAACTTATTACAATGGCCCAACTGACGATGTCTTGCTCTTGTGCTCAGATGTTCATGTTGAGGAGGACATCCGAAGAACCCACCGGGCATGCCGCTGCTATCATGAGCGAGGTCCTCATGAATGCAGAGTGCAATGGTGTGATTGATGCTGCTCAGAAGAGATTGCTCCTTCATGAGATCGCACTACGTTTGTCCTCCTGACAGTCCAGCCCGTCCCCTCCATCTCTTACTCGCCGTACTAATGCTGATACCGAATCCACTCCCTTTTGTGTTGAGAAGTTCCCCTTGCACAGGTGAGAAAGGCATACGGTAGGATGTTACACAGAGGAAATAGAAGATTTCCTGTTTTCATGATTTGACGTATACATACATAGATTACCTTTTCACACTAGGTGATCTGCTTCTTTGTTTACTGGGCTGTGGGCTCATCAAGGTGAGTATTCACCAGTTTACGAAGAGTTTTGTAGCGCGTAGAAACACTGTTACTGCATGTAGGGTTCAATGAGCATTGTAAGCTGTATCTAGGGTGTATCGGTGGCCTATACAAAAGGTATGAATGTAAGTTTAATCCCTCGTTTTTTGACAGAAGAAAGATTGTGG]




>consensus_394#0
TGACCACGCAGCAGTTACCGTGCTTGATCGCTGGAATGTTGCCATCAAAGAGAAGAATGG
AGCAGAAGATCAATGTACCAAGCAAGTTAAATTTATGACTAATTATATAGGTGTTGGATG
TGATGCCAAGGTTGCATATGACTTCCACACTACGAGAGAGGAAAAACCAGATAAATTTTG
CAGCCAGTTTGTCAACAAGCTGATATATGCTAGAGAAGGCGCTAAGGATATCATGGATAG
GTCATGTTCTGATTTACCATGGCATGTTAGTCTTGAAGTTGATGGAAAGAACGTCGAAAT
TCCAGAGGACGCAGAAGGTGTGATTGTTCTGAACATTCCTAGCTACATGGGCGGTGTTGA
TCTTTGGCAAAACGACAATGAACATGATGATGATTTTGGTTTGCAATCCATGCATGACAA
AATGCTTGAGGTTGTCTGTATATCTGGGACGTGGCATCTAGGAAAACTGCAGGTGGGACT
CTCTAGAGCACACAGGCTAGCCCAAGGGAAAGTTATAAGGTTGCATCTCCACAGTTCATT
CCCTGTTCAGGTTGATGGTGAGCCATGGATCCAGCCACCCGGGTGCCTTGAGATATCTCA
TCGTGGGCAGGTACTTTATCTCTCTAGATGAACTAGATACGCATGGAGAGTTTATATATT
ATCTTTTTTACACATGAAGATGCTTCTTTATGTACTGGTGGAAAATGATTTTATTCGCGC
TTTGTGAAATAGTCTGTGGTTTTCTTGAGAACTATAAGGTAGCTGTGACTTCAATTAGTA
TTTCCAAATTTCTGTTGTATATTATGTGATCTTAAAGCATCCTATTTTGTGTTAGTCAAA
TCATGATATACAACCTACAAAGTGGAGTTCATTGAACTGACAACCAACTTCATGCCTGTT
TCAGCACTCTGCATCTGATATTCACATACACAATCATATTGAAGATGTATGTAAAACTTA
TTACAATGGCCCAACTGACGATGTCTTGCTCTTGTGCTCAGATGTTCATGTTGAGGAGGA
CATCCGAAGAACCCACCGGGCATGCCGCTGCTATCATGAGCGAGGTCCTCATGAATGCAG
AGTGCAATGGTGTGATTGATGCTGCTCAGAAGAGATTGCTCCTTCATGAGATCGCACTAC
GTTTGTCCTCCTGACAGTCCAGCCCGTCCCCTCCATCTCTTACTCGCCGTACTAATGCTG
ATACCGAATCCACTCCCTTTTGTGTTGAGAAGTTCCCCTTGCACAGGTGAGAAAGGCATA
CGGTAGGATGTTACACAGAGGAAATAGAAGATTTCCTGTTTTCATGATTTGACGTATACA
TACATAGATTACCTTTTCACACTAGGTGATCTGCTTCTTTGTTTACTGGGCTGTGGGCTC
ATCAAGGTGAGTATTCACCAGTTTACGAAGAGTTTTGTAGCGCGTAGAAACACTGTTACT
GCATGTAGGGTTCAATGAGCATTGTAAGCTGTATCTAGGGTGTATCGGTGGCCTATACAA
AAGGTATGAATGTAAGTTTAATCCCTCGTTTTTTGACAGAAGAAAGATTGTGG

consensusID : consensus_394#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 370
fasta sequence

                              [CCGTACTAATGCTGATACCGAATCCATACCCTTTTGTGTTGAGAAGTTCCCNTTGNCACAGGTGTAGAAAGGNCATACGGTAGGATGTTACACAGAGGAAATAGAAGATTTCCTGTTTTCATGATTTGACGTATACATACATAGATTACCTTTTCACACTAGGTGATCTGCTTCTTTGTTTACTGGGCTGTGGGCTCATCAAGGTGAGTATTCACCAGTTTACGAAGAGTTTTNTAGCGCGTAGAAACACTGTTACTGCATGTAGGGTTCAATGAGCATTGTAAGCTGTATCTAGGGTGTATCGGTGGCCTATACAAAAGGTATGAATGTAAGTTTAATCCCTNGTTTTTTGNCNGNNNNANNNNNNNNN]

[+] EMBL C97330               [CCGTACTAATGCTGATACCGAATCCATACCCTTTTGTGTTGAGAAGTTCCCNTTGNCACAGGTGTAGAAAGGNCATACGGTAGGATGTTACACAGAGGAAATAGAAGATTTCCTGTTTTCATGATTTGACGTATACATACATAGATTACCTTTTCACACTAGGTGATCTGCTTCTTTGTTTACTGGGCTGTGGGCTCATCAAGGTGAGTATTCACCAGTTTACGAAGAGTTTTNTAGCGCGTAGAAACACTGTTACTGCATGTAGGGTTCAATGAGCATTGTAAGCTGTATCTAGGGTGTATCGGTGGCCTATACAAAAGGTATGAATGTAAGTTTAATCCCTNGTTTTTTGNCNGNNNNANNNNNNNNN]




>consensus_394#1
CCGTACTAATGCTGATACCGAATCCATACCCTTTTGTGTTGAGAAGTTCCCNTTGNCACA
GGTGTAGAAAGGNCATACGGTAGGATGTTACACAGAGGAAATAGAAGATTTCCTGTTTTC
ATGATTTGACGTATACATACATAGATTACCTTTTCACACTAGGTGATCTGCTTCTTTGTT
TACTGGGCTGTGGGCTCATCAAGGTGAGTATTCACCAGTTTACGAAGAGTTTTNTAGCGC
GTAGAAACACTGTTACTGCATGTAGGGTTCAATGAGCATTGTAAGCTGTATCTAGGGTGT
ATCGGTGGCCTATACAAAAGGTATGAATGTAAGTTTAATCCCTNGTTTTTTGNCNGNNNN
ANNNNNNNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_394#0      TGACCACGCAGCAGTTACCGTGCTTGATCGCTGGAATGTTGCCATCAAAGAGAAGAATGG 60
consensus_394#1      ------------------------------------------------------------
                                                                                 

consensus_394#0      AGCAGAAGATCAATGTACCAAGCAAGTTAAATTTATGACTAATTATATAGGTGTTGGATG 120
consensus_394#1      ------------------------------------------------------------
                                                                                 

consensus_394#0      TGATGCCAAGGTTGCATATGACTTCCACACTACGAGAGAGGAAAAACCAGATAAATTTTG 180
consensus_394#1      ------------------------------------------------------------
                                                                                 

consensus_394#0      CAGCCAGTTTGTCAACAAGCTGATATATGCTAGAGAAGGCGCTAAGGATATCATGGATAG 240
consensus_394#1      ------------------------------------------------------------
                                                                                 

consensus_394#0      GTCATGTTCTGATTTACCATGGCATGTTAGTCTTGAAGTTGATGGAAAGAACGTCGAAAT 300
consensus_394#1      ------------------------------------------------------------
                                                                                 

consensus_394#0      TCCAGAGGACGCAGAAGGTGTGATTGTTCTGAACATTCCTAGCTACATGGGCGGTGTTGA 360
consensus_394#1      ------------------------------------------------------------
                                                                                 

consensus_394#0      TCTTTGGCAAAACGACAATGAACATGATGATGATTTTGGTTTGCAATCCATGCATGACAA 420
consensus_394#1      ------------------------------------------------------------
                                                                                 

consensus_394#0      AATGCTTGAGGTTGTCTGTATATCTGGGACGTGGCATCTAGGAAAACTGCAGGTGGGACT 480
consensus_394#1      ------------------------------------------------------------
                                                                                 

consensus_394#0      CTCTAGAGCACACAGGCTAGCCCAAGGGAAAGTTATAAGGTTGCATCTCCACAGTTCATT 540
consensus_394#1      ------------------------------------------------------------
                                                                                 

consensus_394#0      CCCTGTTCAGGTTGATGGTGAGCCATGGATCCAGCCACCCGGGTGCCTTGAGATATCTCA 600
consensus_394#1      ------------------------------------------------------------
                                                                                 

consensus_394#0      TCGTGGGCAGGTACTTTATCTCTCTAGATGAACTAGATACGCATGGAGAGTTTATATATT 660
consensus_394#1      ------------------------------------------------------------
                                                                                 

consensus_394#0      ATCTTTTTTACACATGAAGATGCTTCTTTATGTACTGGTGGAAAATGATTTTATTCGCGC 720
consensus_394#1      ------------------------------------------------------------
                                                                                 

consensus_394#0      TTTGTGAAATAGTCTGTGGTTTTCTTGAGAACTATAAGGTAGCTGTGACTTCAATTAGTA 780
consensus_394#1      ------------------------------------------------------------
                                                                                 

consensus_394#0      TTTCCAAATTTCTGTTGTATATTATGTGATCTTAAAGCATCCTATTTTGTGTTAGTCAAA 840
consensus_394#1      ------------------------------------------------------------
                                                                                 

consensus_394#0      TCATGATATACAACCTACAAAGTGGAGTTCATTGAACTGACAACCAACTTCATGCCTGTT 900
consensus_394#1      ------------------------------------------------------------
                                                                                 

consensus_394#0      TCAGCACTCTGCATCTGATATTCACATACACAATCATATTGAAGATGTATGTAAAACTTA 960
consensus_394#1      ------------------------------------------------------------
                                                                                 

consensus_394#0      TTACAATGGCCCAACTGACGATGTCTTGCTCTTGTGCTCAGATGTTCATGTTGAGGAGGA 1020
consensus_394#1      ------------------------------------------------------------
                                                                                 

consensus_394#0      CATCCGAAGAACCCACCGGGCATGCCGCTGCTATCATGAGCGAGGTCCTCATGAATGCAG 1080
consensus_394#1      ------------------------------------------------------------
                                                                                 

consensus_394#0      AGTGCAATGGTGTGATTGATGCTGCTCAGAAGAGATTGCTCCTTCATGAGATCGCACTAC 1140
consensus_394#1      ------------------------------------------------------------
                                                                                 

consensus_394#0      GTTTGTCCTCCTGACAGTCCAGCCCGTCCCCTCCATCTCTTACTCGCCGTACTAATGCTG 1200
consensus_394#1      ----------------------------------------------CCGTACTAATGCTG 14
                                                                   **************

consensus_394#0      ATACCGAATCCACTCCCTTTTGTGTTGAGAAGTTCCCCTTGC-ACAGGTG--AGAAAGGC 1257
consensus_394#1      ATACCGAATCCATACCCTTTTGTGTTGAGAAGTTCCCNTTGNCACAGGTGTAGAAAGGNC 74
                     ************  *********************** ***  *******    ** * *

consensus_394#0      ATACGGTAGGATGTTACACAGAGGAAATAGAAGATTTCCTGTTTTCATGATTTGACGTAT 1317
consensus_394#1      ATACGGTAGGATGTTACACAGAGGAAATAGAAGATTTCCTGTTTTCATGATTTGACGTAT 134
                     ************************************************************

consensus_394#0      ACATACATAGATTACCTTTTCACACTAGGTGATCTGCTTCTTTGTTTACTGGGCTGTGGG 1377
consensus_394#1      ACATACATAGATTACCTTTTCACACTAGGTGATCTGCTTCTTTGTTTACTGGGCTGTGGG 194
                     ************************************************************

consensus_394#0      CTCATCAAGGTGAGTATTCACCAGTTTACGAAGAGTTTTGTAGCGCGTAGAAACACTGTT 1437
consensus_394#1      CTCATCAAGGTGAGTATTCACCAGTTTACGAAGAGTTTTNTAGCGCGTAGAAACACTGTT 254
                     *************************************** ********************

consensus_394#0      ACTGCATGTAGGGTTCAATGAGCATTGTAAGCTGTATCTAGGGTGTATCGGTGGCCTATA 1497
consensus_394#1      ACTGCATGTAGGGTTCAATGAGCATTGTAAGCTGTATCTAGGGTGTATCGGTGGCCTATA 314
                     ************************************************************

consensus_394#0      CAAAAGGTATGAATGTAAGTTTAATCCCTCGTTTTTTGACAGAAGAAAGATTGTGG 1553
consensus_394#1      CAAAAGGTATGAATGTAAGTTTAATCCCTNGTTTTTTGNCNGNNNNANNNNNNNNN 370
                     ***************************** ******** * *    *