cluster # 3947

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Oryza sativa
cluster # 3947 cluster # 3947 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3947#0 length = 592 sequences # 2

consensus_3947#1 length = 382 sequences # 1

consensusID : consensus_3947#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 592
fasta sequence

                              [CCGCGCAAAGGAAAGGCACCCAAGAACCAAACCAAGTCGAAGCAGCGCCATTTCATCGAGCCGTCGCGACGCGCANAAACGAAGCAGCAGAGAGATCATGGCCATGGAGAGGTTCTTGACATCGCTGGTCTTCTGCGAGTGCGAGGCGCCTGGCATGGACGTCTTCGCCTACGCCGCCGGCACGTCGCTGACAGCCGCCGTGAACAAGGTCTCCACCGCCAGCCCCGGCGGCCGTGTCGTCGGGCCGGCGGTCTCGGCGGCGGCGCCATCATCGGAGGCTAAGAAGGANGCCGCCGGCAAGGCGCCGCGGCGGCTGCTGCAGGCGGCGTTACTCTCCGGCGTTCGATGGCCTCAACAGCTTCGAGACCATCGTGNATGACACTGATGATGATCATTGGATCACCCGAGAATGGATTATTGCCTTCGTNTTTGTGTTTAAGCTATGAGCAAGTACTACTAATATNCTTTCATTTGATTGNTGAAATATAANCAATTTTTAACCATGTAGTATTGTAAAAACATAGATTATCTTTGTTACTGATGGCCATTGTATATGATTGGTACTGAAGGATAAATTTTAGAGATCAAAAAA]

[+] EMBL AU078045             [CCGCGCAAAGGAAAGGCACCCAAGAACCAAACCAAGTCGAAGCAGCGCCATTTCATCGAGCCGTCGCGACGCGCANAAACGAAGCAGCAGAGAGATCATGGCCATGGAGAGGTTCTTGACATCGCTGGTCTTCTGCGAGTGCGAGGCGCCTGGCATGGACGTCTTCGCCTACGCCGCCGGCACGTCGCTGACAGCCGCCGTGAACAAGGTCTCCACCGCCAGCCCCGGCGGCCGTGTCGTCGGGCCGGCGGTCTCGGCGGCGGCGCCATCATCGGAGGCTAAGAAGGANGCCGCCGGCAAGGCGCCGCGGCGGCTGCTGCAGGCGGCGTTACTCTCCGGCGTTCGATGGCCTCAACAGCTTCGAGACCATCGTGNATGACACTGATGATGATCATTGGATCACCCGAGAATGGATTATTGCCTTCGTNTTTGTGTTTAAGCTATGAGCAAGTACTACTAATATNCTTTCATTTGATTGNTGAAATATAANC                                                                                                     ]
[+] EMBL AU076248             [                            AAACCAAGTCGAAGCAGCGCCATTTCATCGAGCCGTCGCGACGCGCAGAANCGAAGCAGCAGAGAGATCATGGCCATGGAGAGGTTCTTGACATCGCTGGTCTTCTGCGAGTGCGAGGCGCCTGGCATGGACGTCTTCGCCTACGCCGCCGGCACGTCGCTGACAGCCGCCGTGAACAAGGTCTCCACCGCCAGCCCCGGCGGCCGTGTCGTCGGGCCGGCGGTCTCGGCGGCGGCGCCATCATCGGAGGCTAAGAAGGACGCCGCCGGCAAGGCGCCGCGGCGGCTGCTGCAGGCGGCG TACTCTCCGGCGTTCGATGGCCTCAACAGCTTCGAGACCATCGTG ATG CACTGATGATGATCATT GATCACCCG GAAT GATTATTGCCTTCGTTTTTGTGTTTAAGCTAT AGCAAGTACTACTAATATTCTTTCATTTGATTGTTG AATATAATCAATTTTTAACCATGTAGTATTGTAAAAACATAGATTATCTTTGTTACTGATGGCCATTGTATATGATTGGTACTGAAGGATAAATTTTAGAGATCAAAAAA]




>consensus_3947#0
CCGCGCAAAGGAAAGGCACCCAAGAACCAAACCAAGTCGAAGCAGCGCCATTTCATCGAG
CCGTCGCGACGCGCANAAACGAAGCAGCAGAGAGATCATGGCCATGGAGAGGTTCTTGAC
ATCGCTGGTCTTCTGCGAGTGCGAGGCGCCTGGCATGGACGTCTTCGCCTACGCCGCCGG
CACGTCGCTGACAGCCGCCGTGAACAAGGTCTCCACCGCCAGCCCCGGCGGCCGTGTCGT
CGGGCCGGCGGTCTCGGCGGCGGCGCCATCATCGGAGGCTAAGAAGGANGCCGCCGGCAA
GGCGCCGCGGCGGCTGCTGCAGGCGGCGTTACTCTCCGGCGTTCGATGGCCTCAACAGCT
TCGAGACCATCGTGNATGACACTGATGATGATCATTGGATCACCCGAGAATGGATTATTG
CCTTCGTNTTTGTGTTTAAGCTATGAGCAAGTACTACTAATATNCTTTCATTTGATTGNT
GAAATATAANCAATTTTTAACCATGTAGTATTGTAAAAACATAGATTATCTTTGTTACTG
ATGGCCATTGTATATGATTGGTACTGAAGGATAAATTTTAGAGATCAAAAAA

consensusID : consensus_3947#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 382
fasta sequence

                              [CCTGGCATGGACGTCTTCGCCTACGCCGCCGGCACGTCGCTGACAGCCGCCGTGAACAAGGTCTCCACCGCCAGCCCCGGCGGCCGTGTCGTCGGGCCGGCGGTCTCGGCGGCGGCGCCATCATCGGAGGCTAAGAAGGACGCCGCCGGCAAGGCGCCGCGGCGGCTGCTGCAGGCGGCGTACTCTCCGGCGTTCGATGGCCTCAACAGCTTCGAGACCATCGTGATGCACTGATGATGATCATTGATCACCCGGAATGATTATTGCCTTCGTTTTTGTGTTTAAGCTATAGCAAGTACTACTAATATTCTTTCATTTGATTGTTGAATATAATCAATTTTTAACCATGTNGTNTTGTAAAAACATAAAAAAAAAAAAAAAA]

[+] EMBL AU078046             [CCTGGCATGGACGTCTTCGCCTACGCCGCCGGCACGTCGCTGACAGCCGCCGTGAACAAGGTCTCCACCGCCAGCCCCGGCGGCCGTGTCGTCGGGCCGGCGGTCTCGGCGGCGGCGCCATCATCGGAGGCTAAGAAGGACGCCGCCGGCAAGGCGCCGCGGCGGCTGCTGCAGGCGGCGTACTCTCCGGCGTTCGATGGCCTCAACAGCTTCGAGACCATCGTGATGCACTGATGATGATCATTGATCACCCGGAATGATTATTGCCTTCGTTTTTGTGTTTAAGCTATAGCAAGTACTACTAATATTCTTTCATTTGATTGTTGAATATAATCAATTTTTAACCATGTNGTNTTGTAAAAACATAAAAAAAAAAAAAAAA]




>consensus_3947#1
CCTGGCATGGACGTCTTCGCCTACGCCGCCGGCACGTCGCTGACAGCCGCCGTGAACAAG
GTCTCCACCGCCAGCCCCGGCGGCCGTGTCGTCGGGCCGGCGGTCTCGGCGGCGGCGCCA
TCATCGGAGGCTAAGAAGGACGCCGCCGGCAAGGCGCCGCGGCGGCTGCTGCAGGCGGCG
TACTCTCCGGCGTTCGATGGCCTCAACAGCTTCGAGACCATCGTGATGCACTGATGATGA
TCATTGATCACCCGGAATGATTATTGCCTTCGTTTTTGTGTTTAAGCTATAGCAAGTACT
ACTAATATTCTTTCATTTGATTGTTGAATATAATCAATTTTTAACCATGTNGTNTTGTAA
AAACATAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3947#0      CCGCGCAAAGGAAAGGCACCCAAGAACCAAACCAAGTCGAAGCAGCGCCATTTCATCGAG 60
consensus_3947#1      ------------------------------------------------------------
                                                                                  

consensus_3947#0      CCGTCGCGACGCGCANAAACGAAGCAGCAGAGAGATCATGGCCATGGAGAGGTTCTTGAC 120
consensus_3947#1      ------------------------------------------------------------
                                                                                  

consensus_3947#0      ATCGCTGGTCTTCTGCGAGTGCGAGGCGCCTGGCATGGACGTCTTCGCCTACGCCGCCGG 180
consensus_3947#1      ----------------------------CCTGGCATGGACGTCTTCGCCTACGCCGCCGG 32
                                                  ********************************

consensus_3947#0      CACGTCGCTGACAGCCGCCGTGAACAAGGTCTCCACCGCCAGCCCCGGCGGCCGTGTCGT 240
consensus_3947#1      CACGTCGCTGACAGCCGCCGTGAACAAGGTCTCCACCGCCAGCCCCGGCGGCCGTGTCGT 92
                      ************************************************************

consensus_3947#0      CGGGCCGGCGGTCTCGGCGGCGGCGCCATCATCGGAGGCTAAGAAGGANGCCGCCGGCAA 300
consensus_3947#1      CGGGCCGGCGGTCTCGGCGGCGGCGCCATCATCGGAGGCTAAGAAGGACGCCGCCGGCAA 152
                      ************************************************ ***********

consensus_3947#0      GGCGCCGCGGCGGCTGCTGCAGGCGGCGTTACTCTCCGGCGTTCGATGGCCTCAACAGCT 360
consensus_3947#1      GGCGCCGCGGCGGCTGCTGCAGGCGGCGT-ACTCTCCGGCGTTCGATGGCCTCAACAGCT 211
                      ***************************** ******************************

consensus_3947#0      TCGAGACCATCGTGNATGACACTGATGATGATCATTGGATCACCCGAGAATGGATTATTG 420
consensus_3947#1      TCGAGACCATCGTGAT--GCACTGATGATGATCATTG-ATCACCCG-GAATG-ATTATTG 266
                      **************     ****************** ******** ***** *******

consensus_3947#0      CCTTCGTNTTTGTGTTTAAGCTATGAGCAAGTACTACTAATATNCTTTCATTTGATTGNT 480
consensus_3947#1      CCTTCGTTTTTGTGTTTAAGCTAT-AGCAAGTACTACTAATATTCTTTCATTTGATTGTT 325
                      ******* **************** ****************** ************** *

consensus_3947#0      GAAATATAANCAATTTTTAACCATGTAGTATTGTAAAAACATAGATTATCTTTGTTACTG 540
consensus_3947#1      GAA-TATAATCAATTTTTAACCATGTNGTNTTGTAAAAACATAAAAAAAAAAAAAAAA-- 382
                      *** ***** **************** ** ************* *  *        *   

consensus_3947#0      ATGGCCATTGTATATGATTGGTACTGAAGGATAAATTTTAGAGATCAAAAAA 592
consensus_3947#1      ----------------------------------------------------