cluster # 3949

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Oryza sativa
cluster # 3949 cluster # 3949 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3949#0 length = 712 sequences # 1

consensus_3949#1 length = 319 sequences # 1
consensus_3949#2 length = 155 sequences # 1

consensusID : consensus_3949#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 712
fasta sequence

                              [GCCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAGCAAAGAGTCTAAACAAAATTAATTCCATACAGACCCTAAAAGGACCCTGCAAAAGTACAGGATCCAGTCAGGGGGGGAACTGCATAACACTTAAAAGGCCCATACCTAAGGAAAACATCCTTCAACTATTTATATATTAGTTTAAAAAAAGCGTTTTGACATCACCAGCCATATACGGGGGGTTGAACTTGGGGAGGCAATAAATTCAAATCCATGCATTGGTGTTTATCAAAGCCACGGGTACCGGAAATTGCTCCTGTCGCCAATCTGAGGATCTCATTGCCTGTTAAGCAGTGATAAAAAAAGGCCAGTCCCCCATCCACAATTTTTGAAAGTCTAGGAAGGAAAGGGATCTTTCTCACTTTACTTCTCTTCCCATCTTGACCAAAAAAACCAATTTTGTTATTGAGAACTTTGTCAAGCTCTGAGACCTCCAAGAATCTTTCAGGTGGTGCCTCCCATGAAAAACTGTCCCTTTGCTAAGGGGGCAAAGGGGAAGGTTCCCTGGCCATGGCCTCTTTTACTTGGGCAAAAAATTTTTCTGGAGTTTTTGATTTTAACCAATTTGAGGAAGGACTTGAAGAAATCTCCTTGAGGGAGAACCCGCCAAAGAAAAAAAATTTCCGCCTTGGAAGACCCTCAAGTGCGCCCTGTG]

[+] EMBL CA762727             [GCCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAGCAAAGAGTCTAAACAAAATTAATTCCATACAGACCCTAAAAGGACCCTGCAAAAGTACAGGATCCAGTCAGGGGGGGAACTGCATAACACTTAAAAGGCCCATACCTAAGGAAAACATCCTTCAACTATTTATATATTAGTTTAAAAAAAGCGTTTTGACATCACCAGCCATATACGGGGGGTTGAACTTGGGGAGGCAATAAATTCAAATCCATGCATTGGTGTTTATCAAAGCCACGGGTACCGGAAATTGCTCCTGTCGCCAATCTGAGGATCTCATTGCCTGTTAAGCAGTGATAAAAAAAGGCCAGTCCCCCATCCACAATTTTTGAAAGTCTAGGAAGGAAAGGGATCTTTCTCACTTTACTTCTCTTCCCATCTTGACCAAAAAAACCAATTTTGTTATTGAGAACTTTGTCAAGCTCTGAGACCTCCAAGAATCTTTCAGGTGGTGCCTCCCATGAAAAACTGTCCCTTTGCTAAGGGGGCAAAGGGGAAGGTTCCCTGGCCATGGCCTCTTTTACTTGGGCAAAAAATTTTTCTGGAGTTTTTGATTTTAACCAATTTGAGGAAGGACTTGAAGAAATCTCCTTGAGGGAGAACCCGCCAAAGAAAAAAAATTTCCGCCTTGGAAGACCCTCAAGTGCGCCCTGTG]




>consensus_3949#0
GCCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAGCAA
AGAGTCTAAACAAAATTAATTCCATACAGACCCTAAAAGGACCCTGCAAAAGTACAGGAT
CCAGTCAGGGGGGGAACTGCATAACACTTAAAAGGCCCATACCTAAGGAAAACATCCTTC
AACTATTTATATATTAGTTTAAAAAAAGCGTTTTGACATCACCAGCCATATACGGGGGGT
TGAACTTGGGGAGGCAATAAATTCAAATCCATGCATTGGTGTTTATCAAAGCCACGGGTA
CCGGAAATTGCTCCTGTCGCCAATCTGAGGATCTCATTGCCTGTTAAGCAGTGATAAAAA
AAGGCCAGTCCCCCATCCACAATTTTTGAAAGTCTAGGAAGGAAAGGGATCTTTCTCACT
TTACTTCTCTTCCCATCTTGACCAAAAAAACCAATTTTGTTATTGAGAACTTTGTCAAGC
TCTGAGACCTCCAAGAATCTTTCAGGTGGTGCCTCCCATGAAAAACTGTCCCTTTGCTAA
GGGGGCAAAGGGGAAGGTTCCCTGGCCATGGCCTCTTTTACTTGGGCAAAAAATTTTTCT
GGAGTTTTTGATTTTAACCAATTTGAGGAAGGACTTGAAGAAATCTCCTTGAGGGAGAAC
CCGCCAAAGAAAAAAAATTTCCGCCTTGGAAGACCCTCAAGTGCGCCCTGTG

consensusID : consensus_3949#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTCAACTATATATATATTAGTTTAATAAAAGCGTCTTGACATCACCAGCCATATACAGGGTGTTGAACTTGGGGAGGCAATAAATTCAAATCCATGCATTGCTGTTTATCATAGTCACGTGTACCGGGAATTGCTCCTGTCGCCAATCTGAGGATCTCATTGCCAGTTAAGCAGTGATGAGCAAAGGCCAGTCCCCCATCCACAACTTCTGAAAGTCTAGGAAGTAAAGGTA]

[-] EMBL CF315373             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTCAACTATATATATATTAGTTTAATAAAAGCGTCTTGACATCACCAGCCATATACAGGGTGTTGAACTTGGGGAGGCAATAAATTCAAATCCATGCATTGCTGTTTATCATAGTCACGTGTACCGGGAATTGCTCCTGTCGCCAATCTGAGGATCTCATTGCCAGTTAAGCAGTGATGAGCAAAGGCCAGTCCCCCATCCACAACTTCTGAAAGTCTAGGAAGTAAAGGTA]




>consensus_3949#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTCCTTCAACTATATATATATTAGTTTAATAAAAGCG
TCTTGACATCACCAGCCATATACAGGGTGTTGAACTTGGGGAGGCAATAAATTCAAATCC
ATGCATTGCTGTTTATCATAGTCACGTGTACCGGGAATTGCTCCTGTCGCCAATCTGAGG
ATCTCATTGCCAGTTAAGCAGTGATGAGCAAAGGCCAGTCCCCCATCCACAACTTCTGAA
AGTCTAGGAAGTAAAGGTA

consensusID : consensus_3949#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 155
fasta sequence

                              [AAAATGGATGTAGTATTTACAAGCAAAGAGTCTAAACAAAATTAATTCCATACAGCACCCTCAAAAGGACACTGCAGCAAGTACAGGCATCCAGTCAGTGTGTGCAACTGCCATAACACTTCAATCAGGCACTATACCTCAATGCAGCAACATCC]

[+] EMBL CB965790             [AAAATGGATGTAGTATTTACAAGCAAAGAGTCTAAACAAAATTAATTCCATACAGCACCCTCAAAAGGACACTGCAGCAAGTACAGGCATCCAGTCAGTGTGTGCAACTGCCATAACACTTCAATCAGGCACTATACCTCAATGCAGCAACATCC]




>consensus_3949#2
AAAATGGATGTAGTATTTACAAGCAAAGAGTCTAAACAAAATTAATTCCATACAGCACCC
TCAAAAGGACACTGCAGCAAGTACAGGCATCCAGTCAGTGTGTGCAACTGCCATAACACT
TCAATCAGGCACTATACCTCAATGCAGCAACATCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3949#0      ---------------------------------------------------------GCC 3
consensus_3949#2      ------------------------------------------------------------
consensus_3949#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTTTT 60
                                                                                  

consensus_3949#0      GCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAGCAAAGA 63
consensus_3949#2      -------------------------------AAAATGGATGTAGTATTTACAAGCAAAGA 29
consensus_3949#1      TTTTTTTTTTTTTTTTTTTTTTTTTCCTTCAACTATATATATATTAGTT-TAATAAAAGC 119
                                                         *   * *  *  **  **  **** 

consensus_3949#0      GTCTAAACAAAATTAATTCCATACAG-ACCCT-AAAAGGACCCTGCAA-AAGTACAGG-A 119
consensus_3949#2      GTCTAAACAAAATTAATTCCATACAGCACCCTCAAAAGGACACTGCAGCAAGTACAGGCA 89
consensus_3949#1      GTCTTGACATCACCAGCCATATACAGGGTGTTGAACTTGGGGAGGCAATAAATTCAA--A 177
                      ****  ***  *  *     ******     * **   *     ***  ** * **   *

consensus_3949#0      TCCAGTCAGGGGGGG-AACTGC-ATAA-CACTTAAA--AGGC-CCATACCT-----AAGG 168
consensus_3949#2      TCCAGTCAGTGTGTGCAACTGCCATAA-CACTTCAATCAGGCACTATACCT-----CAAT 143
consensus_3949#1      TCCATGCATTGC-TG--TTTATCATAGTCACGTGTACCGGGAATTGCTCCTGTCGCCAAT 234
                      ****  **  *   *    *   ***  *** *  *   **       ***      *  

consensus_3949#0      AAAACATCCTTCAACTATTTATATATTAGTTTAAAAAAAGCGTTTTGACATCACCAGCCA 228
consensus_3949#2      GCAGCAACATCC------------------------------------------------ 155
consensus_3949#1      CTGAGGATCTCATTGCCAGTTAAGCAGTGATGAGCAAAGGCCAGTCCCCCATCCACAACT 294
                               *                                                  

consensus_3949#0      TATACGGGGGGTTGAACTTGGGGAGGCAATAAATTCAAATCCATGCATTGGTGTTTATCA 288
consensus_3949#2      ------------------------------------------------------------
consensus_3949#1      TCTGAAAGTCTAGGAAGTAAAGGTA----------------------------------- 319
                                                                                  

consensus_3949#0      AAGCCACGGGTACCGGAAATTGCTCCTGTCGCCAATCTGAGGATCTCATTGCCTGTTAAG 348
consensus_3949#2      ------------------------------------------------------------
consensus_3949#1      ------------------------------------------------------------
                                                                                  

consensus_3949#0      CAGTGATAAAAAAAGGCCAGTCCCCCATCCACAATTTTTGAAAGTCTAGGAAGGAAAGGG 408
consensus_3949#2      ------------------------------------------------------------
consensus_3949#1      ------------------------------------------------------------
                                                                                  

consensus_3949#0      ATCTTTCTCACTTTACTTCTCTTCCCATCTTGACCAAAAAAACCAATTTTGTTATTGAGA 468
consensus_3949#2      ------------------------------------------------------------
consensus_3949#1      ------------------------------------------------------------
                                                                                  

consensus_3949#0      ACTTTGTCAAGCTCTGAGACCTCCAAGAATCTTTCAGGTGGTGCCTCCCATGAAAAACTG 528
consensus_3949#2      ------------------------------------------------------------
consensus_3949#1      ------------------------------------------------------------
                                                                                  

consensus_3949#0      TCCCTTTGCTAAGGGGGCAAAGGGGAAGGTTCCCTGGCCATGGCCTCTTTTACTTGGGCA 588
consensus_3949#2      ------------------------------------------------------------
consensus_3949#1      ------------------------------------------------------------
                                                                                  

consensus_3949#0      AAAAATTTTTCTGGAGTTTTTGATTTTAACCAATTTGAGGAAGGACTTGAAGAAATCTCC 648
consensus_3949#2      ------------------------------------------------------------
consensus_3949#1      ------------------------------------------------------------
                                                                                  

consensus_3949#0      TTGAGGGAGAACCCGCCAAAGAAAAAAAATTTCCGCCTTGGAAGACCCTCAAGTGCGCCC 708
consensus_3949#2      ------------------------------------------------------------
consensus_3949#1      ------------------------------------------------------------
                                                                                  

consensus_3949#0      TGTG 712
consensus_3949#2      ----
consensus_3949#1      ----