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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3953#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2107 fasta sequence
[GTCGCCGCCGTCCAGAACCCCAAACCAAACCCTAGCCGGCGGCGTCGTCGGAATCCATGGCGGAAGGTGCGCCGATCATCTACCTTGACCCCGCCACGGTGGCGGAAGCGCGCCGCCGCGGCGACGACCCGCGCAAGCTGGAGGAGTGCACCAAGTACTTGATGACGCACATCTACGGGTTGCTCCCTGGCCCACCCGTACCCATCGCCGCCGCCCGCACCCACGCCGCCTGCGCCGCCGCAGCCTCCGACGGCGTCGACCGCATCAGCGCCCTCCCCGACGCGATCCTCCGCAACATCGTCTCCCGCCTCCCCGTCAAGGACGCCGCGCGCACCGCCGCGCTCTCCCGCCGCTGGCGCCCGCTCTGGCGCTCCACGCCGCTCGTCCTCGTGGACGCCCACCTCTTCCCGCGAGGTCGAAGCTTCGGTGTCTCCGCCTCTGCCCCGACGCGCGCCGACACGCCGGGCATCGTCGCCGCCGTGTCCCGCATCCTCGCCGCGCACCCGGGGCCATTCCGCTGCGTCCACCTCCTCTGCGGCTTCATGGGATCGTACCAGGCCCAGCTCGAGCACTGGCTCCGGTTCCTCGCCGCCAAGGGCGTCGACGACCTCATCCTCGTCAACCGCCCATGGCCGTTCGAGGCGGCTCTCCCTGCCGCCATCCTCCGCATCTCCACCCTCACCCGCCTCTACATCGGCATGTGGAAGTTCCCCGACATTGCCGGCCTCCCCACCAACACCGCCTTCCCCAACCTTCGCGAGCTCGGCATCTACGCCGTCGCCATGGAGAAGGAGGGCCGCGAGGTCGAGTTCATCGTGGCGAGATCCCCCGTGCTGGAGACCCTCAACATCCAAGGAGGCAACACGCAGGTGTTGCGCCTCCGCCTGGAGCACCGGAGCCTTCGTTGCGTGCAGATCTGCTCGTGTTGCGTGGAGAATCTCGCCGTGGTGGACGCGCCATGCCTCGAGCGGCTCGTGCTCTATGATTCTTTGAGCAAGGATGACTCCTGCGTCAGGGTCAAGATCGTCCATGCCCCCAGGCTGCGCTTGTTGGGAAACTTGGAGACAGGATTCCACATGCTGGAGATCCATGACACCTTTGTCAGTGCTGGGATCAGGTCGAGCCCAAGCGCATTGTTCACGAGCGTCAAGATCCTGGGGTTGAATGTGAATTTTGGAGTCAGGCATGATGCCCAGATGCTGCCCAACTTCCTCAAATGCTTTCCCAATGCTGAGTCCCTGCATGTTGTGTGTGCAAAATGTTCTGAAGCCACCAGCTTGGTAAGCCCCAATTTCTGGGATGATGCTGGCCCAATCGAAAGCATCGTGTCCCATGTCAATGTGCTTACATTCCGTGAATTCAAAGGGGAGGCCAACGCGATATCCTTCCTGAAGTACTTCGTCCAGAATGCGCAGATGGTGAAGAATGTGGCTGTGGTGTTGGCCAATCCACAATTCACTTCATACTCCATTGATACGCTCTGGACAGCGAAGATCCTCAAATCTGTGAGATGGGCCAGTAAGATCTCTTCAATGCAGGTCTATAGGAGCGATGACTCAGAAGGTGGTCTGATTTGGAGCTTTCAGAGAGGATCAGATTATTCTATCCGTGACCCTTTTGTGTACTAGGAACCAGAGGTGCCTACATATGTGATCCATCCAAGCTCAGTTTCTCTGAAAGTTGTTAGTGTTATGTTTGCAGGATAGGTGTATCTACATCTCCACATGCAAGGCATTGTTTTTTGTTGTTGGCATGTGCTCAAGACTGGACAGGGTTTTTGGTCTCATTAGTAGTGTAGTACGATTAGCTTTAATTTAGTAGCAAGTTTATTCTAGCCAACAAGTGCCATTCCAGAGGTAAATCTTGCCNGCTGCCTAACAACTAAAAAGTAAGAACTACTCTATCTGGAATTCTGGATTCATGCCTCTTCTTTGGTTAGCTAAGGCTTGATACTGATGTTACATAAGTACGTGGCTTAATGCTGATGTGAAGGTGTGATCCCATTTCTGAGAGTCAGAGATAACCTTCTCATATTCCATTTGTATCTACAAGNTATATTTTCAGGNTCTGCATCACTGGTTCTTTTAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK069629 [GTCGCCGCCGTCCAGAACCCCAAACCAAACCCTAGCCGGCGGCGTCGTCGGAATCCATGGCGGAAGGTGCGCCGATCATCTACCTTGACCCCGCCACGGTGGCGGAAGCGCGCCGCCGCGGCGACGACCCGCGCAAGCTGGAGGAGTGCACCAAGTACTTGATGACGCACATCTACGGGTTGCTCCCTGGCCCACCCGTACCCATCGCCGCCGCCCGCACCCACGCCGCCTGCGCCGCCGCAGCCTCCGACGGCGTCGACCGCATCAGCGCCCTCCCCGACGCGATCCTCCGCAACATCGTCTCCCGCCTCCCCGTCAAGGACGCCGCGCGCACCGCCGCGCTCTCCCGCCGCTGGCGCCCGCTCTGGCGCTCCACGCCGCTCGTCCTCGTGGACGCCCACCTCTTCCCGCGAGGTCGAAGCTTCGGTGTCTCCGCCTCTGCCCCGACGCGCGCCGACACGCCGGGCATCGTCGCCGCCGTGTCCCGCATCCTCGCCGCGCACCCGGGGCCATTCCGCTGCGTCCACCTCCTCTGCGGCTTCATGGGATCGTACCAGGCCCAGCTCGAGCACTGGCTCCGGTTCCTCGCCGCCAAGGGCGTCGACGACCTCATCCTCGTCAACCGCCCATGGCCGTTCGAGGCGGCTCTCCCTGCCGCCATCCTCCGCATCTCCACCCTCACCCGCCTCTACATCGGCATGTGGAAGTTCCCCGACATTGCCGGCCTCCCCACCAACACCGCCTTCCCCAACCTTCGCGAGCTCGGCATCTACGCCGTCGCCATGGAGAAGGAGGGCCGCGAGGTCGAGTTCATCGTGGCGAGATCCCCCGTGCTGGAGACCCTCAACATCCAAGGAGGCAACACGCAGGTGTTGCGCCTCCGCCTGGAGCACCGGAGCCTTCGTTGCGTGCAGATCTGCTCGTGTTGCGTGGAGAATCTCGCCGTGGTGGACGCGCCATGCCTCGAGCGGCTCGTGCTCTATGATTCTTTGAGCAAGGATGACTCCTGCGTCAGGGTCAAGATCGTCCATGCCCCCAGGCTGCGCTTGTTGGGAAACTTGGAGACAGGATTCCACATGCTGGAGATCCATGACACCTTTGTCAGTGCTGGGATCAGGTCGAGCCCAAGCGCATTGTTCACGAGCGTCAAGATCCTGGGGTTGAATGTGAATTTTGGAGTCAGGCATGATGCCCAGATGCTGCCCAACTTCCTCAAATGCTTTCCCAATGCTGAGTCCCTGCATGTTGTGTGTGCAAAATGTTCTGAAGCCACCAGCTTGGTAAGCCCCAATTTCTGGGATGATGCTGGCCCAATCGAAAGCATCGTGTCCCATGTCAATGTGCTTACATTCCGTGAATTCAAAGGGGAGGCCAACGCGATATCCTTCCTGAAGTACTTCGTCCAGAATGCGCAGATGGTGAAGAATGTGGCTGTGGTGTTGGCCAATCCACAATTCACTTCATACTCCATTGATACGCTCTGGACAGCGAAGATCCTCAAATCTGTGAGATGGGCCAGTAAGATCTCTTCAATGCAGGTCTATAGGAGCGATGACTCAGAAGGTGGTCTGATTTGGAGCTTTCAGAGAGGATCAGATTATTCTATCCGTGACCCTTTTGTGTACTAGGAACCAGAGGTGCCTACATATGTGATCCATCCAAGCTCAGTTTCTCTGAAAGTTGTTAGTGTTATGTTTGCAGGATAGGTGTATCTACATCTCCACATGCAAGGCATTGTTTTTTGTTGTTGGCATGTGCTCAAGACTGGACAGGGTTTTTGGTCTCATTAGTAGTGTAGTACGATTAGCTTTAATTTAGTAGCAAGTTTATTCTAGCCAACAAGTGCCATT ]
[+] EMBL CB097027 [ TCAAATCTGTGAGATGGGCCAGTAAGATCTCTTCAATGCAGGTCTATAGGAGCGATGACTCAGAAGGTGGTCTGATTTGGAGCTTTCAGAGAGGATCAGATTATTCTATCCGTGACCCTTTTGTGTACTAGGAACCAGAGGTGCCTACATATGTGATCCATCCAAGCTCAGTTTCTCTGANAGTTGTTAGTGTTATGTTTGCAGGATAGGTGTATCTACATCTCCACATGCAAGGCATTGCTTTTTGTTGTTGGCATGTGCTCAAGACTGGACAGGGTTTTTGGTCTCATTAGTAGTGTAGTACGATTAGCTTTAATTTAGTAGCAAGTTTATTCTAGCCAACAACTGTCATTCCAGAGGTAAATCTTGCCNGCTGCCTAACAACTAAAAAGTAAGAACTACTCTATCTGGAATTCTGGATTCATGCCTCTTCTTTGGTTAGCTAAGGCTTGATACTGATGTTACATAAGTACGTGGCTTAATGCTGATGTGAAGGTGTGATCCCATTTCTGAGAGTCAGAGATAACCTTCTCATATTCCATTTGTATCTACAAGNTATATTTTCAGGNTCTGCATCACTGGTTCTTTTAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_3953#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[TGTGAATTTTGGAGTCAGGCATGATGCCCAGATGCTGCCCAACTTCCTCAAATGCTTTCCCAATGCTGAGTCCCTGCATGTTGTGTGTGCAAAATGTTCTGAAGCCACCAGCTTGGTAAGCCCCAATTTCTGGGATGATGCTGGCCCAATCGAAAGCATCGTGTCCCATGTCAATGTGCTTACATTCCGTGAATTCAAAGGGGAGGCCAACGCGATATCCTTCCTGAAGTACTTCGTCCAGAATGCGCAGATGGTGAAGAATGTGGCTGTGGTGTTGGCCAATCCACAATTCACTTCATACTCCATTGATACGCTCTGGACAGCGAAGATCCTCAAATTTGTGAGATGGGCCAGTAAGATCTTTTCAGTGCAGGTCTATAGGAGCGATGACTCAGAAGGTGGTTTGATTTGGAGCTTTCAGAGAGGATCAGATTATTCTATCCGTGACCCTTTTGTGTACTAGGAACCAGAGGTGCCTACATATGTGATCCATCCAAGCTCAGTTTCTTTGAAAGTTGTTAGTGTTATGTTTGCAGGATAGGTGTATTTACATCTCCACATGCAAGGCATTGCTTTTTGTTGTTGGCATGTGCTCAAGACTGGACAGGGTTTTTGGTCTCATTAGTAGTGTAGTACGATTAGCTTTAATTTAGTAGCAAGTTTATTCTAGCCAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA762731 [TGTGAATTTTGGAGTCAGGCATGATGCCCAGATGCTGCCCAACTTCCTCAAATGCTTTCCCAATGCTGAGTCCCTGCATGTTGTGTGTGCAAAATGTTCTGAAGCCACCAGCTTGGTAAGCCCCAATTTCTGGGATGATGCTGGCCCAATCGAAAGCATCGTGTCCCATGTCAATGTGCTTACATTCCGTGAATTCAAAGGGGAGGCCAACGCGATATCCTTCCTGAAGTACTTCGTCCAGAATGCGCAGATGGTGAAGAATGTGGCTGTGGTGTTGGCCAATCCACAATTCACTTCATACTCCATTGATACGCTCTGGACAGCGAAGATCCTCAAATTTGTGAGATGGGCCAGTAAGATCTTTTCAGTGCAGGTCTATAGGAGCGATGACTCAGAAGGTGGTTTGATTTGGAGCTTTCAGAGAGGATCAGATTATTCTATCCGTGACCCTTTTGTGTACTAGGAACCAGAGGTGCCTACATATGTGATCCATCCAAGCTCAGTTTCTTTGAAAGTTGTTAGTGTTATGTTTGCAGGATAGGTGTATTTACATCTCCACATGCAAGGCATTGCTTTTTGTTGTTGGCATGTGCTCAAGACTGGACAGGGTTTTTGGTCTCATTAGTAGTGTAGTACGATTAGCTTTAATTTAGTAGCAAGTTTATTCTAGCCAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3953#0 GTCGCCGCCGTCCAGAACCCCAAACCAAACCCTAGCCGGCGGCGTCGTCGGAATCCATGG 60
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 CGGAAGGTGCGCCGATCATCTACCTTGACCCCGCCACGGTGGCGGAAGCGCGCCGCCGCG 120
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 GCGACGACCCGCGCAAGCTGGAGGAGTGCACCAAGTACTTGATGACGCACATCTACGGGT 180
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 TGCTCCCTGGCCCACCCGTACCCATCGCCGCCGCCCGCACCCACGCCGCCTGCGCCGCCG 240
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 CAGCCTCCGACGGCGTCGACCGCATCAGCGCCCTCCCCGACGCGATCCTCCGCAACATCG 300
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 TCTCCCGCCTCCCCGTCAAGGACGCCGCGCGCACCGCCGCGCTCTCCCGCCGCTGGCGCC 360
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 CGCTCTGGCGCTCCACGCCGCTCGTCCTCGTGGACGCCCACCTCTTCCCGCGAGGTCGAA 420
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 GCTTCGGTGTCTCCGCCTCTGCCCCGACGCGCGCCGACACGCCGGGCATCGTCGCCGCCG 480
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 TGTCCCGCATCCTCGCCGCGCACCCGGGGCCATTCCGCTGCGTCCACCTCCTCTGCGGCT 540
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 TCATGGGATCGTACCAGGCCCAGCTCGAGCACTGGCTCCGGTTCCTCGCCGCCAAGGGCG 600
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 TCGACGACCTCATCCTCGTCAACCGCCCATGGCCGTTCGAGGCGGCTCTCCCTGCCGCCA 660
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 TCCTCCGCATCTCCACCCTCACCCGCCTCTACATCGGCATGTGGAAGTTCCCCGACATTG 720
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 CCGGCCTCCCCACCAACACCGCCTTCCCCAACCTTCGCGAGCTCGGCATCTACGCCGTCG 780
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 CCATGGAGAAGGAGGGCCGCGAGGTCGAGTTCATCGTGGCGAGATCCCCCGTGCTGGAGA 840
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 CCCTCAACATCCAAGGAGGCAACACGCAGGTGTTGCGCCTCCGCCTGGAGCACCGGAGCC 900
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 TTCGTTGCGTGCAGATCTGCTCGTGTTGCGTGGAGAATCTCGCCGTGGTGGACGCGCCAT 960
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 GCCTCGAGCGGCTCGTGCTCTATGATTCTTTGAGCAAGGATGACTCCTGCGTCAGGGTCA 1020
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 AGATCGTCCATGCCCCCAGGCTGCGCTTGTTGGGAAACTTGGAGACAGGATTCCACATGC 1080
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 TGGAGATCCATGACACCTTTGTCAGTGCTGGGATCAGGTCGAGCCCAAGCGCATTGTTCA 1140
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 CGAGCGTCAAGATCCTGGGGTTGAATGTGAATTTTGGAGTCAGGCATGATGCCCAGATGC 1200
consensus_3953#1 -------------------------TGTGAATTTTGGAGTCAGGCATGATGCCCAGATGC 35
***********************************
consensus_3953#0 TGCCCAACTTCCTCAAATGCTTTCCCAATGCTGAGTCCCTGCATGTTGTGTGTGCAAAAT 1260
consensus_3953#1 TGCCCAACTTCCTCAAATGCTTTCCCAATGCTGAGTCCCTGCATGTTGTGTGTGCAAAAT 95
************************************************************
consensus_3953#0 GTTCTGAAGCCACCAGCTTGGTAAGCCCCAATTTCTGGGATGATGCTGGCCCAATCGAAA 1320
consensus_3953#1 GTTCTGAAGCCACCAGCTTGGTAAGCCCCAATTTCTGGGATGATGCTGGCCCAATCGAAA 155
************************************************************
consensus_3953#0 GCATCGTGTCCCATGTCAATGTGCTTACATTCCGTGAATTCAAAGGGGAGGCCAACGCGA 1380
consensus_3953#1 GCATCGTGTCCCATGTCAATGTGCTTACATTCCGTGAATTCAAAGGGGAGGCCAACGCGA 215
************************************************************
consensus_3953#0 TATCCTTCCTGAAGTACTTCGTCCAGAATGCGCAGATGGTGAAGAATGTGGCTGTGGTGT 1440
consensus_3953#1 TATCCTTCCTGAAGTACTTCGTCCAGAATGCGCAGATGGTGAAGAATGTGGCTGTGGTGT 275
************************************************************
consensus_3953#0 TGGCCAATCCACAATTCACTTCATACTCCATTGATACGCTCTGGACAGCGAAGATCCTCA 1500
consensus_3953#1 TGGCCAATCCACAATTCACTTCATACTCCATTGATACGCTCTGGACAGCGAAGATCCTCA 335
************************************************************
consensus_3953#0 AATCTGTGAGATGGGCCAGTAAGATCTCTTCAATGCAGGTCTATAGGAGCGATGACTCAG 1560
consensus_3953#1 AATTTGTGAGATGGGCCAGTAAGATCTTTTCAGTGCAGGTCTATAGGAGCGATGACTCAG 395
*** *********************** **** ***************************
consensus_3953#0 AAGGTGGTCTGATTTGGAGCTTTCAGAGAGGATCAGATTATTCTATCCGTGACCCTTTTG 1620
consensus_3953#1 AAGGTGGTTTGATTTGGAGCTTTCAGAGAGGATCAGATTATTCTATCCGTGACCCTTTTG 455
******** ***************************************************
consensus_3953#0 TGTACTAGGAACCAGAGGTGCCTACATATGTGATCCATCCAAGCTCAGTTTCTCTGAAAG 1680
consensus_3953#1 TGTACTAGGAACCAGAGGTGCCTACATATGTGATCCATCCAAGCTCAGTTTCTTTGAAAG 515
***************************************************** ******
consensus_3953#0 TTGTTAGTGTTATGTTTGCAGGATAGGTGTATCTACATCTCCACATGCAAGGCATTGTTT 1740
consensus_3953#1 TTGTTAGTGTTATGTTTGCAGGATAGGTGTATTTACATCTCCACATGCAAGGCATTGCTT 575
******************************** ************************ **
consensus_3953#0 TTTGTTGTTGGCATGTGCTCAAGACTGGACAGGGTTTTTGGTCTCATTAGTAGTGTAGTA 1800
consensus_3953#1 TTTGTTGTTGGCATGTGCTCAAGACTGGACAGGGTTTTTGGTCTCATTAGTAGTGTAGTA 635
************************************************************
consensus_3953#0 CGATTAGCTTTAATTTAGTAGCAAGTTTATTCTAGCCAACAAGTGCCATTCCAGAGGTAA 1860
consensus_3953#1 CGATTAGCTTTAATTTAGTAGCAAGTTTATTCTAGCCAAAAAAAAAAAAAAAAAAAAAA- 694
*************************************** ** * * * *
consensus_3953#0 ATCTTGCCNGCTGCCTAACAACTAAAAAGTAAGAACTACTCTATCTGGAATTCTGGATTC 1920
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 ATGCCTCTTCTTTGGTTAGCTAAGGCTTGATACTGATGTTACATAAGTACGTGGCTTAAT 1980
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 GCTGATGTGAAGGTGTGATCCCATTTCTGAGAGTCAGAGATAACCTTCTCATATTCCATT 2040
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 TGTATCTACAAGNTATATTTTCAGGNTCTGCATCACTGGTTCTTTTAAAAAAAAAAAAAA 2100
consensus_3953#1 ------------------------------------------------------------
consensus_3953#0 AAAAAAA 2107
consensus_3953#1 -------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||