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Oryza sativa
cluster # 3959 cluster # 3959       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3959#0 length = 1221 sequences # 3  

consensusID : consensus_3959#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1221
fasta sequence
                              [GCATCACCCAGCACTCCAGCAGCATTCAGCTTCCCTTCCTCTCCCCCTCTCTTTGTTCTCCTCTAGCTCATCCCCATACCCAAACCTCCATCAGATCACAACTTCGCTAGCTAACTAGAGAGCAAAGGCCGGGCAGTGCAGGGGGGAAAAAGGAAGAGAGCCAAATGGGCAACATGCTGCCGTGCTTGGTCCAAGGCAGGACGACCCTCCCGGCCGCCATGAACCCCAAGCAGAGGCTCTACTCCCTCAAGCTCCTC-GTCAAGGCCCTCCACAAGCTGAAGAAGAAGATGATGATGAAGCCTAACAAGGGCAAGAAGATCGGTAGCAGCAAACCGTCATCGCCGGCGGCGCCGGCGGAAGCAGCTTCAGCCACAGCGGCGGCGGTGGCAGGAGGAGGCGTAGAGGCGGCGATCGGGAGCAGTAAGCCCAAGGTGAGCCCGCGAAGAGCGGCTCAAGGTGGGCAAAGGAAGGGCGTGGTGCGGGTGAAGGTGGTGCTGACAAAGGAGGAGGCGGCGCGGCTGCTGTCGCTCACCGTCGTCAGCGCCGGCGCCGGCGCAGGCGGTGGCCGCCGGAAGACCACCGCGCAGATCATCGCCGAGATCAAGAGGATGGAGATACGCCGTGCCATGGCGACATCGTCGGCGGCGGTGGCGTGGCGCCCGGCGCTCGCGAGCATCCCCGAGGAGCAGCACCACCACTCGCCGCGCCGTAGCCTCGGCGTGCAGCAGGTGGCGTAGAGGTCACATACTCACATGTTTATATGTGCCTACATGCTCGTGTGCACGTACGTAGGATGATCGTGGTAGAGATGGGTAATCAAACACACAGAGAGAGGACGAGAAGGGTCTGGGTTGAGAGGCGAGCTAGGCCGGCGACGACGACGGATCGACGGCCATGTACATGCTCCCCCTCCCATGCACGAGCTCCGGCCGGCGGCGCAGCGAGGCGCCGCCGTGCTTGCTATACAGCTTCCCTTTTTTGAAGCTTAATTACCTCGAGGGGTCCCTCCTCCATCGCCCTGCGCTGGCCATCTCATATGTTAATTAGTGACCACCAAATGAAATGGAAAATGGAATGTAAAAGTTAATCCCCTTCCTTGATCATATCGTACGATCTTTCGGCTGAATGCTTGTAAGCATGCATGCATGTTCGAGATGTTAATTAATTCCTTCGAGCAATTTGAAAGAAAGAAATTTCCTTGGTGGAAAAAAAAAAAAAAAA]

[+] EMBL AK073193             [GCATCACCCAGCACTCCAGCAGCATTCAGCTTCCCTTCCTCTCCCCCTCTCTTTGTTCTCCTCTAGCTCATCCCCATACCCAAACCTCCATCAGATCACAACTTCGCTAGCTAACTAGAGAGCAAAGGCCGGGCAGTGCAGGGGGGAAAAAGGAAGAGAGCCAAATGGGCAACATGCTGCCGTGCTTGGTCCAAGGCAGGACGACCCTCCCGGCCGCCATGAACCCCAAGCAGAGGCTCTACTCCCTCAAGCTCCTC GTCAAGGCCCTCCACAAGCTGAAGAAGAAGATGATGATGAAGCCTAACAAGGGCAAGAAGATCGGTAGCAGCAAACCGTCATCGCCGGCGGCGCCGGCGGAAGCAGCTTCAGCCACAGCGGCGGCGGTGGCAGGAGGAGGCGTAGAGGCGGCGATCGGGAGCAGTAAGCCCAAGGTGAGCCCGCGAAGAGCGGCTCAAGGTGGGCAAAGGAAGGGCGTGGTGCGGGTGAAGGTGGTGCTGACAAAGGAGGAGGCGGCGCGGCTGCTGTCGCTCACCGTCGTCAGCGCCGGCGCCGGCGCAGGCGGTGGCCGCCGGAAGACCACCGCGCAGATCATCGCCGAGATCAAGAGGATGGAGATACGCCGTGCCATGGCGACATCGTCGGCGGCGGTGGCGTGGCGCCCGGCGCTCGCGAGCATCCCCGAGGAGCAGCACCACCACTCGCCGCGCCGTAGCCTCGGCGTGCAGCAGGTGGCGTAGAGGTCACATACTCACATGTTTATATGTGCCTACATGCTCGTGTGCACGTACGTAGGATGATCGTGGTAGAGATGGGTAATCAAACACACAGAGAGAGGACGAGAAGGGTCTGGGTTGAGAGGCGAGCTAGGCCGGCGACGACGACGGATCGACGGCCATGTACATGCTCCCCCTCCCATGCACGAGCTCCGGCCGGCGGCGCAGCGAGGCGCCGCCGTGCTTGCTATACAGCTTCCCTTTTTTGAAGCTTAATTACCTCGAGGGGTCCCTCCTCCATCGCCCTGCGCTGGCCATCTCATATGTTAATTAGTGACCACCAAATGAAATGGAAAATGGAATGTAAAAGTTAATCCCCTTCCTTGATCATATCGTACGATCTTTCGGCTGAATGCTTGTAAGCATGCATGCATGTTCGAGATGTTAATTAATTCCTTCGAGCAATTTGAAAGAAAGAAATTTCCTT                     ]
[+] EMBL OSR21382A            [          GCACTCCAGCAGCATTCAGCTTCCCTTCCTCTCCCCCTCTCTTTGTTCTCCTCTAGCTCATCCCCATACCCAAACCTCCATCAGATCACAACTTCGCTAGCTAACTAGAGAGCAAAGGCCGGGCAGTGCAGGGGGGAAAAAGGAAGAGAGCCAAATGGGCAACATGCTGCCGTGCTTGGTCCAAGGCAGGACGACCCTCCCGGCCGCCATGAACCCCAAGCAGAGGCTCTACTCCCTCAAGCTCCTCGGTCAAGGCCCTCCACAAGCTGAAGAAGAAGATGATGATGAAGCCTAACAAGGGCAAGANGATCGGTAGCAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU184388             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCCTNCCATGCACGAGCTNCGGCCGGCGGCGCANCGAGGCGCCNCCGTGCTTGCTATACAGCTTNCCTTTTTTGAAGCTTAATTACCTCGAGGGGTNCCTCCTCCATCGCCCTGCGCTGGCCATNTCATATGTTAATTAGTGNCCCCCCAATGAAATGGAAAATGGAATGTAAAAGTTAATCCCCTTCCTTGATCATATCGTACGATCTTTCGGCTGAATGCTTGTAAGCATGCATGCATGTTCGAGATGTTAATTAATTCCTTCGAGCNATTTGAAAGAAAGAAATTTCCTTGGTGGAAAAAAAAAAAAAAAA]


>consensus_3959#0 GCATCACCCAGCACTCCAGCAGCATTCAGCTTCCCTTCCTCTCCCCCTCTCTTTGTTCTC CTCTAGCTCATCCCCATACCCAAACCTCCATCAGATCACAACTTCGCTAGCTAACTAGAG AGCAAAGGCCGGGCAGTGCAGGGGGGAAAAAGGAAGAGAGCCAAATGGGCAACATGCTGC CGTGCTTGGTCCAAGGCAGGACGACCCTCCCGGCCGCCATGAACCCCAAGCAGAGGCTCT ACTCCCTCAAGCTCCTCGTCAAGGCCCTCCACAAGCTGAAGAAGAAGATGATGATGAAGC CTAACAAGGGCAAGAAGATCGGTAGCAGCAAACCGTCATCGCCGGCGGCGCCGGCGGAAG CAGCTTCAGCCACAGCGGCGGCGGTGGCAGGAGGAGGCGTAGAGGCGGCGATCGGGAGCA GTAAGCCCAAGGTGAGCCCGCGAAGAGCGGCTCAAGGTGGGCAAAGGAAGGGCGTGGTGC GGGTGAAGGTGGTGCTGACAAAGGAGGAGGCGGCGCGGCTGCTGTCGCTCACCGTCGTCA GCGCCGGCGCCGGCGCAGGCGGTGGCCGCCGGAAGACCACCGCGCAGATCATCGCCGAGA TCAAGAGGATGGAGATACGCCGTGCCATGGCGACATCGTCGGCGGCGGTGGCGTGGCGCC CGGCGCTCGCGAGCATCCCCGAGGAGCAGCACCACCACTCGCCGCGCCGTAGCCTCGGCG TGCAGCAGGTGGCGTAGAGGTCACATACTCACATGTTTATATGTGCCTACATGCTCGTGT GCACGTACGTAGGATGATCGTGGTAGAGATGGGTAATCAAACACACAGAGAGAGGACGAG AAGGGTCTGGGTTGAGAGGCGAGCTAGGCCGGCGACGACGACGGATCGACGGCCATGTAC ATGCTCCCCCTCCCATGCACGAGCTCCGGCCGGCGGCGCAGCGAGGCGCCGCCGTGCTTG CTATACAGCTTCCCTTTTTTGAAGCTTAATTACCTCGAGGGGTCCCTCCTCCATCGCCCT GCGCTGGCCATCTCATATGTTAATTAGTGACCACCAAATGAAATGGAAAATGGAATGTAA AAGTTAATCCCCTTCCTTGATCATATCGTACGATCTTTCGGCTGAATGCTTGTAAGCATG CATGCATGTTCGAGATGTTAATTAATTCCTTCGAGCAATTTGAAAGAAAGAAATTTCCTT GGTGGAAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)