Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3959 cluster # 3959       Sequences # 3       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3959#0 length = 1221 sequences # 3  
consensusID : consensus_3959#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1221
fasta sequence 
                              [GCATCACCCAGCACTCCAGCAGCATTCAGCTTCCCTTCCTCTCCCCCTCTCTTTGTTCTCCTCTAGCTCATCCCCATACCCAAACCTCCATCAGATCACAACTTCGCTAGCTAACTAGAGAGCAAAGGCCGGGCAGTGCAGGGGGGAAAAAGGAAGAGAGCCAAATGGGCAACATGCTGCCGTGCTTGGTCCAAGGCAGGACGACCCTCCCGGCCGCCATGAACCCCAAGCAGAGGCTCTACTCCCTCAAGCTCCTC-GTCAAGGCCCTCCACAAGCTGAAGAAGAAGATGATGATGAAGCCTAACAAGGGCAAGAAGATCGGTAGCAGCAAACCGTCATCGCCGGCGGCGCCGGCGGAAGCAGCTTCAGCCACAGCGGCGGCGGTGGCAGGAGGAGGCGTAGAGGCGGCGATCGGGAGCAGTAAGCCCAAGGTGAGCCCGCGAAGAGCGGCTCAAGGTGGGCAAAGGAAGGGCGTGGTGCGGGTGAAGGTGGTGCTGACAAAGGAGGAGGCGGCGCGGCTGCTGTCGCTCACCGTCGTCAGCGCCGGCGCCGGCGCAGGCGGTGGCCGCCGGAAGACCACCGCGCAGATCATCGCCGAGATCAAGAGGATGGAGATACGCCGTGCCATGGCGACATCGTCGGCGGCGGTGGCGTGGCGCCCGGCGCTCGCGAGCATCCCCGAGGAGCAGCACCACCACTCGCCGCGCCGTAGCCTCGGCGTGCAGCAGGTGGCGTAGAGGTCACATACTCACATGTTTATATGTGCCTACATGCTCGTGTGCACGTACGTAGGATGATCGTGGTAGAGATGGGTAATCAAACACACAGAGAGAGGACGAGAAGGGTCTGGGTTGAGAGGCGAGCTAGGCCGGCGACGACGACGGATCGACGGCCATGTACATGCTCCCCCTCCCATGCACGAGCTCCGGCCGGCGGCGCAGCGAGGCGCCGCCGTGCTTGCTATACAGCTTCCCTTTTTTGAAGCTTAATTACCTCGAGGGGTCCCTCCTCCATCGCCCTGCGCTGGCCATCTCATATGTTAATTAGTGACCACCAAATGAAATGGAAAATGGAATGTAAAAGTTAATCCCCTTCCTTGATCATATCGTACGATCTTTCGGCTGAATGCTTGTAAGCATGCATGCATGTTCGAGATGTTAATTAATTCCTTCGAGCAATTTGAAAGAAAGAAATTTCCTTGGTGGAAAAAAAAAAAAAAAA]

[+] EMBL AK073193             [GCATCACCCAGCACTCCAGCAGCATTCAGCTTCCCTTCCTCTCCCCCTCTCTTTGTTCTCCTCTAGCTCATCCCCATACCCAAACCTCCATCAGATCACAACTTCGCTAGCTAACTAGAGAGCAAAGGCCGGGCAGTGCAGGGGGGAAAAAGGAAGAGAGCCAAATGGGCAACATGCTGCCGTGCTTGGTCCAAGGCAGGACGACCCTCCCGGCCGCCATGAACCCCAAGCAGAGGCTCTACTCCCTCAAGCTCCTC GTCAAGGCCCTCCACAAGCTGAAGAAGAAGATGATGATGAAGCCTAACAAGGGCAAGAAGATCGGTAGCAGCAAACCGTCATCGCCGGCGGCGCCGGCGGAAGCAGCTTCAGCCACAGCGGCGGCGGTGGCAGGAGGAGGCGTAGAGGCGGCGATCGGGAGCAGTAAGCCCAAGGTGAGCCCGCGAAGAGCGGCTCAAGGTGGGCAAAGGAAGGGCGTGGTGCGGGTGAAGGTGGTGCTGACAAAGGAGGAGGCGGCGCGGCTGCTGTCGCTCACCGTCGTCAGCGCCGGCGCCGGCGCAGGCGGTGGCCGCCGGAAGACCACCGCGCAGATCATCGCCGAGATCAAGAGGATGGAGATACGCCGTGCCATGGCGACATCGTCGGCGGCGGTGGCGTGGCGCCCGGCGCTCGCGAGCATCCCCGAGGAGCAGCACCACCACTCGCCGCGCCGTAGCCTCGGCGTGCAGCAGGTGGCGTAGAGGTCACATACTCACATGTTTATATGTGCCTACATGCTCGTGTGCACGTACGTAGGATGATCGTGGTAGAGATGGGTAATCAAACACACAGAGAGAGGACGAGAAGGGTCTGGGTTGAGAGGCGAGCTAGGCCGGCGACGACGACGGATCGACGGCCATGTACATGCTCCCCCTCCCATGCACGAGCTCCGGCCGGCGGCGCAGCGAGGCGCCGCCGTGCTTGCTATACAGCTTCCCTTTTTTGAAGCTTAATTACCTCGAGGGGTCCCTCCTCCATCGCCCTGCGCTGGCCATCTCATATGTTAATTAGTGACCACCAAATGAAATGGAAAATGGAATGTAAAAGTTAATCCCCTTCCTTGATCATATCGTACGATCTTTCGGCTGAATGCTTGTAAGCATGCATGCATGTTCGAGATGTTAATTAATTCCTTCGAGCAATTTGAAAGAAAGAAATTTCCTT                     ]
[+] EMBL OSR21382A            [          GCACTCCAGCAGCATTCAGCTTCCCTTCCTCTCCCCCTCTCTTTGTTCTCCTCTAGCTCATCCCCATACCCAAACCTCCATCAGATCACAACTTCGCTAGCTAACTAGAGAGCAAAGGCCGGGCAGTGCAGGGGGGAAAAAGGAAGAGAGCCAAATGGGCAACATGCTGCCGTGCTTGGTCCAAGGCAGGACGACCCTCCCGGCCGCCATGAACCCCAAGCAGAGGCTCTACTCCCTCAAGCTCCTCGGTCAAGGCCCTCCACAAGCTGAAGAAGAAGATGATGATGAAGCCTAACAAGGGCAAGANGATCGGTAGCAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU184388             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCCTNCCATGCACGAGCTNCGGCCGGCGGCGCANCGAGGCGCCNCCGTGCTTGCTATACAGCTTNCCTTTTTTGAAGCTTAATTACCTCGAGGGGTNCCTCCTCCATCGCCCTGCGCTGGCCATNTCATATGTTAATTAGTGNCCCCCCAATGAAATGGAAAATGGAATGTAAAAGTTAATCCCCTTCCTTGATCATATCGTACGATCTTTCGGCTGAATGCTTGTAAGCATGCATGCATGTTCGAGATGTTAATTAATTCCTTCGAGCNATTTGAAAGAAAGAAATTTCCTTGGTGGAAAAAAAAAAAAAAAA]




>consensus_3959#0
GCATCACCCAGCACTCCAGCAGCATTCAGCTTCCCTTCCTCTCCCCCTCTCTTTGTTCTC
CTCTAGCTCATCCCCATACCCAAACCTCCATCAGATCACAACTTCGCTAGCTAACTAGAG
AGCAAAGGCCGGGCAGTGCAGGGGGGAAAAAGGAAGAGAGCCAAATGGGCAACATGCTGC
CGTGCTTGGTCCAAGGCAGGACGACCCTCCCGGCCGCCATGAACCCCAAGCAGAGGCTCT
ACTCCCTCAAGCTCCTCGTCAAGGCCCTCCACAAGCTGAAGAAGAAGATGATGATGAAGC
CTAACAAGGGCAAGAAGATCGGTAGCAGCAAACCGTCATCGCCGGCGGCGCCGGCGGAAG
CAGCTTCAGCCACAGCGGCGGCGGTGGCAGGAGGAGGCGTAGAGGCGGCGATCGGGAGCA
GTAAGCCCAAGGTGAGCCCGCGAAGAGCGGCTCAAGGTGGGCAAAGGAAGGGCGTGGTGC
GGGTGAAGGTGGTGCTGACAAAGGAGGAGGCGGCGCGGCTGCTGTCGCTCACCGTCGTCA
GCGCCGGCGCCGGCGCAGGCGGTGGCCGCCGGAAGACCACCGCGCAGATCATCGCCGAGA
TCAAGAGGATGGAGATACGCCGTGCCATGGCGACATCGTCGGCGGCGGTGGCGTGGCGCC
CGGCGCTCGCGAGCATCCCCGAGGAGCAGCACCACCACTCGCCGCGCCGTAGCCTCGGCG
TGCAGCAGGTGGCGTAGAGGTCACATACTCACATGTTTATATGTGCCTACATGCTCGTGT
GCACGTACGTAGGATGATCGTGGTAGAGATGGGTAATCAAACACACAGAGAGAGGACGAG
AAGGGTCTGGGTTGAGAGGCGAGCTAGGCCGGCGACGACGACGGATCGACGGCCATGTAC
ATGCTCCCCCTCCCATGCACGAGCTCCGGCCGGCGGCGCAGCGAGGCGCCGCCGTGCTTG
CTATACAGCTTCCCTTTTTTGAAGCTTAATTACCTCGAGGGGTCCCTCCTCCATCGCCCT
GCGCTGGCCATCTCATATGTTAATTAGTGACCACCAAATGAAATGGAAAATGGAATGTAA
AAGTTAATCCCCTTCCTTGATCATATCGTACGATCTTTCGGCTGAATGCTTGTAAGCATG
CATGCATGTTCGAGATGTTAATTAATTCCTTCGAGCAATTTGAAAGAAAGAAATTTCCTT
GGTGGAAAAAAAAAAAAAAAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)