These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2494 fasta sequence [TCTCCATCCACCCTGGTGGTAGTCAAGCACTCAAGCTAGTGTAACGGCGAGTCTACCGCCGCGTTGCCCGACGCGGCCATGCCGCCGCCGCCCGAAGACGACGGGTCCTCCTCCGCGCGGACGCCGCTCATACCCCCCACACCTCCTCCTCCCGGCCGAGCGGTGGCGCGGCTCCACCCTCTCCCGCTCCTCGTTGCGGCGGCCTTCGCCGCATCGTACCACCTCCTCGTCGCGCCCGCGCCGTCGTACTACCGCTCGCTCTTCCTCTCCCTCGGATCCAACGACACCGCGGCAGCCCACCTCCACGCGCTCACCCTCCGCCCCCACCTCGCGGGCACCGAGGCCAACGCCCGCGCCGCCGAGCACGTCGTCTCCGCGCTCTCCTCCCTCTCCTTCCCCACCCGCGTCGTGCCCTACTCCGTCCTCCTCGCCTACCCGGTCCACCGCTCCCTCTCCCTCTCGGCGCCAGGCCACGCCACCACCCCCTTTGCGCTGGTGCAGGACACATACCCCGGTGATCCCTATGCCGCGGTCTCCGCGGAGGCCGTCCCCACCTTCCTCGCCTACGCCGCGTCCGGCTCGGTCGCCGCCGAGGCCGTCTACGCTAACTACGGCCGCCCGGAGGATTTCGCCTACCTCGCCGCCCGCGGCGTAGACGTCACCGGGAAGGTCGTCCTCGCGCGCTACGGCAAGGTGTACCGCGGCGACATCGTGATAAACGCCCGGAAAGCTGGCGCGGCGGCGGCGGTCATATACACCGATGCCAAGGACTACGCGGCGGGGGAGGCCTTCCCGGATGGTCCATGGATGCCGCCCACCGGTGTGCAGGTCGGGAGCACGTTCAAGGGGGTGGGGGATCCCACGACGCCGATGTGGGCGTCGTCCGAAGGGTGCGAGCGCGTGAGCATCCCGGAGGCGATGGCCACCGACGACATGCCGGGGATACCGGCGCTGCCTGTGTCGGGAAGTGATGGGGAGGCTATACTACAGCTTATCGGCGGTGATGTCGCGCCCAAGGATTGGCAAGGCGGAGATGGCTCGCCGGTTTACCGGCTCGGGCCCGGGCCGGCGGTGCTCAATCTCACCTACATTGGGAACGAGACAATGGCTACTATTCAGAATGTCATCTCAGTGATCGAAGGGAAAGAAGAACCTGAACGCTATATAATCCTTGGTAATCATCGTGATGCATGGACTTTTGGGGCAGTTGATCCGAACAGTGGAACAGCAGCCTTGCTTGAGTTAGCTCAAAGGTTCTCTGAGCTACAAAAGAAGGGTTGGAGGCCTCGACGGACCATCATCTTGTGTAACTGGGATGCCGAAGAGTATGGACTGGTTGGATCCACTGAATGGGTTGAAGAGAACAGGGCTATGCTAACTTCAAGAACTGTTGCTTACCTGAATGTTGATTCTGCAGTGTATGGTGCAGGGTTTTATGCATCAGCTACTCCTCAACTTGATGAGTTGCTTAAGGAGGCGAGTAAACAGGTTCAAAATCCAGATAATGAGACACAAAGTCTGTATGACTTATGGATGGCTTCTGATAGTTCTTCCATGATTAAGATTGGAAGAATAGGAGGTGGAGGATCAGATTATTCTGCCTTTGTTCAACACATTGGTATCCCTTCAATTGACATTTCTATGGGATCAGAATATGCGGTCTACCATAGCTTGTATGATGACTTTGTGTGGATGGAGAAGTTCGGAGATCCCTTGTTCCGCAGGCACGTCGCAGCGGCAAGCATGTGGGGGCTTGTCGCCCTGAGGCTTTCCGATGAGGAGATCCTACCCTTCAACTACAGCACTTATGCTGTAGAGCTTGAGAAGGGTGCAATCGATATAAATAAGAGATTGCTGGGAGTGCCTGTCAGCTCATCTCCCCTGCAAAAGTCAATCGCCGAGTTCAAAAGGGCAGCTCTACAAATGGATTCTGAAATGAAGGCCTTACAGACAAGGAAAGTTTGGAACCCCTGGAGAAACAATCCCCTGAAGGTCAGAGATCTCAATGAGCGGTTGATGATGACGGAGCGAGCATTCACCGATCGAGAAGGACTATCTGGGAGGCCATGGTA--CAAACACCTGATTTATGCACCATCA-CTGCATGATGATTACGGAGCGCAGGTGTATCCA-GGTGTTGATGATGCCA-TTCAGATGGCAGAGAGGACGAATACGTCCGAATCCTGGCGATCTGTGCAGCATGAGATTTACAGGATTGCTAGGGTCATCAACCAGGCCTCGCTAGTCCTAAGTGGAGGGTTAACATAAACAACTGTTGGGGAAGCGGTGGAAATGGAACTATGCTTTCTACTCGGGGGACTGGTAATCGTTGACTGCGATAAATGAAATGTTCATGTCACTTATTTGGAACAAAAAAAAGGAAGAAAAATAGAGGAATTTGTGGGTTTTAAATCCAAAGAGCGAAGGGTGAAGAGCAAAGCTTTGGAAAGTAAACTGTATCAAAATAGGACTCGAGGGAATAAAGGGTACATGTACC] [+] EMBL AK069026 [TCTCCATCCACCCTGGTGGTAGTCAAGCACTCAAGCTAGTGTAACGGCGAGTCTACCGCCGCGTTGCCCGACGCGGCCATGCCGCCGCCGCCCGAAGACGACGGGTCCTCCTCCGCGCGGACGCCGCTCATACCCCCCACACCTCCTCCTCCCGGCCGAGCGGTGGCGCGGCTCCACCCTCTCCCGCTCCTCGTTGCGGCGGCCTTCGCCGCATCGTACCACCTCCTCGTCGCGCCCGCGCCGTCGTACTACCGCTCGCTCTTCCTCTCCCTCGGATCCAACGACACCGCGGCAGCCCACCTCCACGCGCTCACCCTCCGCCCCCACCTCGCGGGCACCGAGGCCAACGCCCGCGCCGCCGAGCACGTCGTCTCCGCGCTCTCCTCCCTCTCCTTCCCCACCCGCGTCGTGCCCTACTCCGTCCTCCTCGCCTACCCGGTCCACCGCTCCCTCTCCCTCTCGGCGCCAGGCCACGCCACCACCCCCTTTGCGCTGGTGCAGGACACATACCCCGGTGATCCCTATGCCGCGGTCTCCGCGGAGGCCGTCCCCACCTTCCTCGCCTACGCCGCGTCCGGCTCGGTCGCCGCCGAGGCCGTCTACGCTAACTACGGCCGCCCGGAGGATTTCGCCTACCTCGCCGCCCGCGGCGTAGACGTCACCGGGAAGGTCGTCCTCGCGCGCTACGGCAAGGTGTACCGCGGCGACATCGTGATAAACGCCCGGAAAGCTGGCGCGGCGGCGGCGGTCATATACACCGATGCCAAGGACTACGCGGCGGGGGAGGCCTTCCCGGATGGTCCATGGATGCCGCCCACCGGTGTGCAGGTCGGGAGCACGTTCAAGGGGGTGGGGGATCCCACGACGCCGATGTGGGCGTCGTCCGAAGGGTGCGAGCGCGTGAGCATCCCGGAGGCGATGGCCACCGACGACATGCCGGGGATACCGGCGCTGCCTGTGTCGGGAAGTGATGGGGAGGCTATACTACAGCTTATCGGCGGTGATGTCGCGCCCAAGGATTGGCAAGGCGGAGATGGCTCGCCGGTTTACCGGCTCGGGCCCGGGCCGGCGGTGCTCAATCTCACCTACATTGGGAACGAGACAATGGCTACTATTCAGAATGTCATCTCAGTGATCGAAGGGAAAGAAGAACCTGAACGCTATATAATCCTTGGTAATCATCGTGATGCATGGACTTTTGGGGCAGTTGATCCGAACAGTGGAACAGCAGCCTTGCTTGAGTTAGCTCAAAGGTTCTCTGAGCTACAAAAGAAGGGTTGGAGGCCTCGACGGACCATCATCTTGTGTAACTGGGATGCCGAAGAGTATGGACTGGTTGGATCCACTGAATGGGTTGAAGAGAACAGGGCTATGCTAACTTCAAGAACTGTTGCTTACCTGAATGTTGATTCTGCAGTGTATGGTGCAGGGTTTTATGCATCAGCTACTCCTCAACTTGATGAGTTGCTTAAGGAGGCGAGTAAACAGGTTCAAAATCCAGATAATGAGACACAAAGTCTGTATGACTTATGGATGGCTTCTGATAGTTCTTCCATGATTAAGATTGGAAGAATAGGAGGTGGAGGATCAGATTATTCTGCCTTTGTTCAACACATTGGTATCCCTTCAATTGACATTTCTATGGGATCAGAATATGCGGTCTACCATAGCTTGTATGATGACTTTGTGTGGATGGAGAAGTTCGGAGATCCCTTGTTCCGCAGGCACGTCGCAGCGGCAAGCATGTGGGGGCTTGTCGCCCTGAGGCTTTCCGATGAGGAGATCCTACCCTTCAACTACAGCACTTATGCTGTAGAGCTTGAGAAGGGTGCAATCGATATAAATAAGAGATTGCTGGGAGTGCCTGTCAGCTCATCTCCCCTGCAAAAGTCAATCGCCGAGTTCAAAAGGGCAGCTCTACAAATGGATTCTGAAATGAAGGCCTTACAGACAAGGAAAGTTTGGAACCCCTGGAGAAACAATCCCCTGAAGGTCAGAGATCTCAATGAGCGGTTGATGATGACGGAGCGAGCATTCACCGATCGAGAAGGACTATCTGGGAGGCCATGGTA CAAACACCTGATTTATGCACCATCA CTGCATGATGATTACGGAGCGCAGGTGTATCCA GGTGTTGATGATGCCA TTCAGATGGCAGAGAGGACGAATACGTCCGAATCCTGGCGATCTGTGCAGCATGAGATTTACAGGATTGCTAGGGTCATCAACCAGGCCTCGCTAGTCCTAAGTGGAGGGTTAACATAAACAACTGTTGGGGAAGCGGTGGAAATGGAACTATGCTTTCTACTCGGGGGACTGGTAATCGTTGACTGCGATAAATGAAATGTTCATGTCACTTATTTGGAACAAAAAAAAGGAAGAAAAATAGAGGAATTTGTGGGTTTTAAATCCAAAGAGCGAAGGGTGAAGAGCAAAGCTTTGGAAAGTAAACTGTATCAAAATAGGACTCGAGGGAATAAAGGGTACATGTACC] [+] EMBL BM038810 [ cCATTC CCGATCGAGAAGGACTATCTGGGAGCCCATGGTAACCAACCACCTGATTTATGCACCATCACCTGCATGATGATTACGGAGC CAGGTGTATCCACGGTGTTGATGAT CCACTTCAGAT GCAGAGAGGACGAATACGTCCGAATCCTGGCGATCTGT CAGCATGAGATTTACAGGATTGCTAGGGTCATCAACCA GCCTCGCTAGTCCTAAGTGGAGGGTTAACATAAAC ACTGTTGGGGAACCGGTGGAAATGGAACTATGCTTTCTACTCGGGGGACTGGTAATCGTTGACTGCGATAAATGAAATGTTCATGTCACTTATTTG ] consensusID : consensus_3971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 153 fasta sequence [CGAACGGGTGAAGACCGCCAAAGCTTTGGAAAGTNAACTGTATCAAAATAGGACCTCGAGGGAATAAAGGGTACATGTACCTTTGATAGCTACAGAGTGGAAAGTAAACTATATCAAATAGGAACAGTAAACAAAGATAAAACAAAATTTCGC] [+] EMBL BQ906307 [CGAACGGGTGAAGACCGCCAAAGCTTTGGAAAGTNAACTGTATCAAAATAGGACCTCGAGGGAATAAAGGGTACATGTACCTTTGATAGCTACAGAGTGGAAAGTAAACTATATCAAATAGGAACAGTAAACAAAGATAAAACAAAATTTCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3971#0 TCTCCATCCACCCTGGTGGTAGTCAAGCACTCAAGCTAGTGTAACGGCGAGTCTACCGCC 60 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 GCGTTGCCCGACGCGGCCATGCCGCCGCCGCCCGAAGACGACGGGTCCTCCTCCGCGCGG 120 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 ACGCCGCTCATACCCCCCACACCTCCTCCTCCCGGCCGAGCGGTGGCGCGGCTCCACCCT 180 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 CTCCCGCTCCTCGTTGCGGCGGCCTTCGCCGCATCGTACCACCTCCTCGTCGCGCCCGCG 240 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 CCGTCGTACTACCGCTCGCTCTTCCTCTCCCTCGGATCCAACGACACCGCGGCAGCCCAC 300 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 CTCCACGCGCTCACCCTCCGCCCCCACCTCGCGGGCACCGAGGCCAACGCCCGCGCCGCC 360 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 GAGCACGTCGTCTCCGCGCTCTCCTCCCTCTCCTTCCCCACCCGCGTCGTGCCCTACTCC 420 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 GTCCTCCTCGCCTACCCGGTCCACCGCTCCCTCTCCCTCTCGGCGCCAGGCCACGCCACC 480 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 ACCCCCTTTGCGCTGGTGCAGGACACATACCCCGGTGATCCCTATGCCGCGGTCTCCGCG 540 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 GAGGCCGTCCCCACCTTCCTCGCCTACGCCGCGTCCGGCTCGGTCGCCGCCGAGGCCGTC 600 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 TACGCTAACTACGGCCGCCCGGAGGATTTCGCCTACCTCGCCGCCCGCGGCGTAGACGTC 660 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 ACCGGGAAGGTCGTCCTCGCGCGCTACGGCAAGGTGTACCGCGGCGACATCGTGATAAAC 720 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 GCCCGGAAAGCTGGCGCGGCGGCGGCGGTCATATACACCGATGCCAAGGACTACGCGGCG 780 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 GGGGAGGCCTTCCCGGATGGTCCATGGATGCCGCCCACCGGTGTGCAGGTCGGGAGCACG 840 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 TTCAAGGGGGTGGGGGATCCCACGACGCCGATGTGGGCGTCGTCCGAAGGGTGCGAGCGC 900 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 GTGAGCATCCCGGAGGCGATGGCCACCGACGACATGCCGGGGATACCGGCGCTGCCTGTG 960 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 TCGGGAAGTGATGGGGAGGCTATACTACAGCTTATCGGCGGTGATGTCGCGCCCAAGGAT 1020 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 TGGCAAGGCGGAGATGGCTCGCCGGTTTACCGGCTCGGGCCCGGGCCGGCGGTGCTCAAT 1080 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 CTCACCTACATTGGGAACGAGACAATGGCTACTATTCAGAATGTCATCTCAGTGATCGAA 1140 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 GGGAAAGAAGAACCTGAACGCTATATAATCCTTGGTAATCATCGTGATGCATGGACTTTT 1200 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 GGGGCAGTTGATCCGAACAGTGGAACAGCAGCCTTGCTTGAGTTAGCTCAAAGGTTCTCT 1260 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 GAGCTACAAAAGAAGGGTTGGAGGCCTCGACGGACCATCATCTTGTGTAACTGGGATGCC 1320 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 GAAGAGTATGGACTGGTTGGATCCACTGAATGGGTTGAAGAGAACAGGGCTATGCTAACT 1380 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 TCAAGAACTGTTGCTTACCTGAATGTTGATTCTGCAGTGTATGGTGCAGGGTTTTATGCA 1440 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 TCAGCTACTCCTCAACTTGATGAGTTGCTTAAGGAGGCGAGTAAACAGGTTCAAAATCCA 1500 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 GATAATGAGACACAAAGTCTGTATGACTTATGGATGGCTTCTGATAGTTCTTCCATGATT 1560 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 AAGATTGGAAGAATAGGAGGTGGAGGATCAGATTATTCTGCCTTTGTTCAACACATTGGT 1620 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 ATCCCTTCAATTGACATTTCTATGGGATCAGAATATGCGGTCTACCATAGCTTGTATGAT 1680 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 GACTTTGTGTGGATGGAGAAGTTCGGAGATCCCTTGTTCCGCAGGCACGTCGCAGCGGCA 1740 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 AGCATGTGGGGGCTTGTCGCCCTGAGGCTTTCCGATGAGGAGATCCTACCCTTCAACTAC 1800 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 AGCACTTATGCTGTAGAGCTTGAGAAGGGTGCAATCGATATAAATAAGAGATTGCTGGGA 1860 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 GTGCCTGTCAGCTCATCTCCCCTGCAAAAGTCAATCGCCGAGTTCAAAAGGGCAGCTCTA 1920 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 CAAATGGATTCTGAAATGAAGGCCTTACAGACAAGGAAAGTTTGGAACCCCTGGAGAAAC 1980 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 AATCCCCTGAAGGTCAGAGATCTCAATGAGCGGTTGATGATGACGGAGCGAGCATTCACC 2040 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 GATCGAGAAGGACTATCTGGGAGGCCATGGTACAAACACCTGATTTATGCACCATCACTG 2100 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 CATGATGATTACGGAGCGCAGGTGTATCCAGGTGTTGATGATGCCATTCAGATGGCAGAG 2160 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 AGGACGAATACGTCCGAATCCTGGCGATCTGTGCAGCATGAGATTTACAGGATTGCTAGG 2220 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 GTCATCAACCAGGCCTCGCTAGTCCTAAGTGGAGGGTTAACATAAACAACTGTTGGGGAA 2280 consensus_3971#1 ------------------------------------------------------------ consensus_3971#0 GCGGTGGAAATGGAACTATGCTTTCTACTCGGGGGACTGGTAATCGTTGACTGCGATAAA 2340 consensus_3971#1 ---------------------------------------CGAACGGGTGAAGACCGCCAA 21 ** * *** * ** consensus_3971#0 TGAAATGTTCATGTCACTTATTTGGAACAAAAAAAAGGAAGAAAAATAGAGGAATTTGTG 2400 consensus_3971#1 AGCTTTGGA-AAGTNAACTGTATCAAAATAGGACCTCGAGGGAATA-AAGGGTACATGTA 79 * ** * ** * * * * ** * * ** * ** * * ** * *** consensus_3971#0 GGTTTTAAATCCAAAGAGCGAAGGGTGAAGAGCAAAGCTTTGGAA-AGTAAACTGTATCA 2459 consensus_3971#1 CCTTTGATAGCTACAGAGTGGAAAGTAAACTATATCAAATAGGAACAGTAAACAAAGATA 139 *** * * * * **** * * ** ** * * **** ******* * consensus_3971#0 AAATAGGACTCGAGGGAATAAAGGGTACATGTACC 2494 consensus_3971#1 AAACAAAATTTCGC--------------------- 153 *** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||