These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3973#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1053 fasta sequence [ATCCCTGCAACCCCAAAGTTCTCCTGTCGCCGGGGTCGGCGGCGAGGCGGCGACGCCATGGCCGCACGGCCCACAGGTCGCCGCCGCCGCGGCCTCGCCGTCGTCGTATCAAGTAACATCGCGCTCTTTGCGGGCGGCGACGAAGCCGACGATGGTCCCGGATTCTCCGGGGGGAGATCGAATGCTTCTCTCCGCCGCCGAGCGCCGCGGCAGGGCGGCTCTGAACGAGGGGGAGCTCGGAGCCCTTTTGATTGGGAGTGCGGAAACCCTCGGTGGCGGCTCGTAACTCGTAGCCCCTGGCTCCGACCACGTCTCCGCCTGATGGAGGTGGCATCCAGAGAGAGAACATCGAGCACGTACCTGCTGATGCAGCCTGGAAGTTGTTACCCCTGGAATCCCTGACATGGAGAACCAACCTTGTTCTGTAGTTTTTATGCGATGCATAGAAGTCCTCCACAGCCATTGAGATGCTGGTCCTTGCTTCCTTGCCAACTAACGATCCCAGGTCCAGGATCACCCCGACGTGGAATTCATCTGCTCCAGGGTCGTTCGTCGCATTCAGAGCTACGGCACATGAATGGGCGAAGAGCATCAGCAAGAGGATGGCTCCAGGAGGTGCTTTCTCCATTACAGGACTACCTGCTGAAAACTTGAGAAGACTTTACCGTCTCTGCAAGACTACAATGGTCAAGAACTCAAGATCACTATCATGTATATCATAGTATGATACTTGGAAGTATTTGAACCGTCTAATTTGATGCGTTTCATGACGCGTTTATCGCAGATGGATCCAAAACCATATATGGAATGATTCGTAGGTGGTTTGTAGAATGAACAGTCCATGGAATAGATTCCAGAAACTGTTAATGACTAATTGGCGCCGTTAGGAGCAAATCCTGATTGTTCAGCATCTGGGAATTTCTCTTTAATTGCCTCGAGCAAGCGATGGCAAGTCAACTCTACTGATTATACTGAATTGGTCAGTACAATTACTGTATTCTAACGACTTGTATTAATCCTTGACTCGTCCGTGAAAATCGACTGCTCATACTC] [+] EMBL AK120077 [ATCCCTGCAACCCCAAAGTTCTCCTGTCGCCGGGGTCGGCGGCGAGGCGGCGACGCCATGGCCGCACGGCCCACAGGTCGCCGCCGCCGCGGCCTCGCCGTCGTCGTATCAAGTAACATCGCGCTCTTTGCGGGCGGCGACGAAGCCGACGATGGTCCCGGATTCTCCGGGGGGAGATCGAATGCTTCTCTCCGCCGCCGAGCGCCGCGGCAGGGCGGCTCTGAACGAGGGGGAGCTCGGAGCCCTTTTGATTGGGAGTGCGGAAACCCTCGGTGGCGGCTCGTAACTCGTAGCCCCTGGCTCCGACCACGTCTCCGCCTGATGGAGGTGGCATCCAGAGAGAGAACATCGAGCACGTACCTGCTGATGCAGCCTGGAAGTTGTTACCCCTGGAATCCCTGACATGGAGAACCAACCTTGTTCTGTAGTTTTTATGCGATGCATAGAAGTCCTCCACAGCCATTGAGATGCTGGTCCTTGCTTCCTTGCCAACTAACGATCCCAGGTCCAGGATCACCCCGACGTGGAATTCATCTGCTCCAGGGTCGTTCGTCGCATTCAGAGCTACGGCACATGAATGGGCGAAGAGCATCAGCAAGAGGATGGCTCCAGGAGGTGCTTTCTCCATTACAGGACTACCTGCTGAAAACTTGAGAAGACTTTACCGTCTCTGCAAGACTACAATGGTCAAGAACTCAAGATCACTATCATGTATATCATAGTATGATACTTGGAAGTATTTGAACCGTCTAATTTGATGCGTTTCATGACGCGTTTATCGCAGATGGATCCAAAACCATATATGGAATGATTCGTAGGTGGTTTGTAGAATGAACAGTCCATGGAATAGATTCCAGAAACTGTTAATGACTAATTGGCGCCGTTAGGAGCAAATCCTGATTGTTCAGCATCTGGGAATTTCTCTTTAATTGCCTCGAGCAAGCGATGGCAAGTCAACTCTACTGATTATACTGAATTGGTCAGTACAATTACTGTATTCTAACGACTTGTATTAATCCTTGA ] [+] EMBL AK060993 [ CCTGTCGCCGGGGTCGGCGGCGAGGCGGCGACGCCATGGCCGCACGGCCCACAGGTCGCCGCCGCCGCGGCCTCGCCGTCGTCGTATCAAGTAACATCGCGCTCTTTGCGGGCGGCGACGAAGCCGACGATGGTCCCGGATTCTCCGGGGGGAGATCGAATGCTTCTCTCCGCCGCCGAGCGCCGCGGCAGGGCGGCTCTGAACGAGGGGGAGCTCGGAGCCCTTTTGATTGGGAGTGCGGAAACCCTCGGTGGCGGCTCGTAACTCGTAGCCCCTGGCTCCGACCACGTCTCCGCCTGATGGAGGTGGCATCCAGAGAGAGAACATCGAGCACGTACCTGCTGATGCAGCCTGGAAGTTGTTACCCCTGGAATCCCTGACATGGAGAACCAACCTTGTTCTGTAGTTTTTATGCGATGCATAGAAGTCCTCCACAGCCATTGAGATGCTGGTCCTTGCTTCCTTGCCAACTAACGATCCCAGGTCCAGGATCACCCCGACGTGGAATTCATCTGCTCCAGGGTCGTTCGTCGCATTCAGAGCTACGGCACATGAATGGGCGAAGAGCATCAGCAAGAGGATGGCTCCAGGAGGTGCTTTCTCCATTACAGGACTACCTGCTGAAAACTTGAGAAGACTTTACCGTCTCTGCAAGACTACAATGGTCAAGAACTCAAGATCACTATCATGTATATCATAGTATGATACTTGGAAGTATTTGAACCGTCTAATTTGATGCGTTTCATGACGCGTTTATCGCAGATGGATCCAAAACCATATATGGAATGATTCGTAGGTGGTTTGTAGAATGAACAGTCCATGGAATAGATTCCAGAAACTGTTAATGACTAATTGGCGCCGTTAGGAGCAAATCCTGATTGTTCAGCATCTGGGAATTTCTCTTTAATTGCCTCGAGCAAGCGATGGCAAGTCAACTCTACTGATTATACTGAATTGGTCAGTACAATTACTGTATTCTAACGACTTGTATTAATCCTTGACTCGTCCGTGAAAATCGACTGCTCATACTC] consensusID : consensus_3973#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [TAAACCGGTGAGGAAGAGCGAGCAATTCACTTATTCTTCGAACACAAGGTTTTACCCAGAACATCGAGCACGTACCTGCTGATGCAGCCTGGAAGTTGTTACCCCTGGAATCCCTGACATGGAGAACCAACCTTGTTCTGTAGTTTTTATGCGATGCATAGAAGTCCTCCACAGCCATTGAGATGCTGGTCCTTGCTTCCTTGCCAACTAACGATCCCAGGTCCAGGATCACCCCGACGTGGAATTCATCTGCTCCAGGGTCGTTCGTCGCATTCAGAGCTACGGCACATGAATGGGCGAAGAGCATCAGCAAGAGGATGGCTCCAGGAGGTGCTTTCTCCATTACAGGACTACCTGCTGAAAACTTGAGAAGACTTTACCGTCTCTGCAAGACTACNATGGTCAAGAACTCAAGATCACTATCATGTATATCATAGTATGATACTTGGAAGTATTTGAACCGTCTAATTTGATGCGTTTCATGACGCGTTTATCGCAGATGGATCCAAAACCATATATGGAATGATTCGTAGGTGGTTTGTAGAATGAACAGTCCATGGAATAGATTCCAGAAACTGTTAATGACTAATTGGCGCC] [+] EMBL CA755601 [TAAACCGGTGAGGAAGAGCGAGCAATTCACTTATTCTTCGAACACAAGGTTTTACCCAGAACATCGAGCACGTACCTGCTGATGCAGCCTGGAAGTTGTTACCCCTGGAATCCCTGACATGGAGAACCAACCTTGTTCTGTAGTTTTTATGCGATGCATAGAAGTCCTCCACAGCCATTGAGATGCTGGTCCTTGCTTCCTTGCCAACTAACGATCCCAGGTCCAGGATCACCCCGACGTGGAATTCATCTGCTCCAGGGTCGTTCGTCGCATTCAGAGCTACGGCACATGAATGGGCGAAGAGCATCAGCAAGAGGATGGCTCCAGGAGGTGCTTTCTCCATTACAGGACTACCTGCTGAAAACTTGAGAAGACTTTACCGTCTCTGCAAGACTACNATGGTCAAGAACTCAAGATCACTATCATGTATATCATAGTATGATACTTGGAAGTATTTGAACCGTCTAATTTGATGCGTTTCATGACGCGTTTATCGCAGATGGATCCAAAACCATATATGGAATGATTCGTAGGTGGTTTGTAGAATGAACAGTCCATGGAATAGATTCCAGAAACTGTTAATGACTAATTGGCGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3973#0 ATCCCTGCAACCCCAAAGTTCTCCTGTCGCCGGGGTCGGCGGCGAGGCGGCGACGCCATG 60 consensus_3973#1 ------------------------------------------------------------ consensus_3973#0 GCCGCACGGCCCACAGGTCGCCGCCGCCGCGGCCTCGCCGTCGTCGTATCAAGTAACATC 120 consensus_3973#1 ------------------------------------------------------------ consensus_3973#0 GCGCTCTTTGCGGGCGGCGACGAAGCCGACGATGGTCCCGGATTCTCCGGGGGGAGATCG 180 consensus_3973#1 ------------------------------------------------------------ consensus_3973#0 AATGCTTCTCTCCGCCGCCGAGCGCCGCGGCAGGGCGGCTCTGAACGAGGGGGAGCTCGG 240 consensus_3973#1 ------------------------------------------------------------ consensus_3973#0 AGCCCTTTTGATTGGGAGTGCGGAAACCCTCGGTGGCGGCTCGTAACTCGTAGCCCCTGG 300 consensus_3973#1 -----------------------------------TAAACCGGTGAGGAAGAGCGAGCAA 25 * ** * *** consensus_3973#0 CTCCGACCACGTCTCCGCCTGATGGAGGTGGCATCCAGAGAGAGAACATCGAGCACGTAC 360 consensus_3973#1 TTC--ACTTATTCTTCGAACA--CAAGGTTTTACCCAG------AACATCGAGCACGTAC 75 ** ** *** ** **** * **** **************** consensus_3973#0 CTGCTGATGCAGCCTGGAAGTTGTTACCCCTGGAATCCCTGACATGGAGAACCAACCTTG 420 consensus_3973#1 CTGCTGATGCAGCCTGGAAGTTGTTACCCCTGGAATCCCTGACATGGAGAACCAACCTTG 135 ************************************************************ consensus_3973#0 TTCTGTAGTTTTTATGCGATGCATAGAAGTCCTCCACAGCCATTGAGATGCTGGTCCTTG 480 consensus_3973#1 TTCTGTAGTTTTTATGCGATGCATAGAAGTCCTCCACAGCCATTGAGATGCTGGTCCTTG 195 ************************************************************ consensus_3973#0 CTTCCTTGCCAACTAACGATCCCAGGTCCAGGATCACCCCGACGTGGAATTCATCTGCTC 540 consensus_3973#1 CTTCCTTGCCAACTAACGATCCCAGGTCCAGGATCACCCCGACGTGGAATTCATCTGCTC 255 ************************************************************ consensus_3973#0 CAGGGTCGTTCGTCGCATTCAGAGCTACGGCACATGAATGGGCGAAGAGCATCAGCAAGA 600 consensus_3973#1 CAGGGTCGTTCGTCGCATTCAGAGCTACGGCACATGAATGGGCGAAGAGCATCAGCAAGA 315 ************************************************************ consensus_3973#0 GGATGGCTCCAGGAGGTGCTTTCTCCATTACAGGACTACCTGCTGAAAACTTGAGAAGAC 660 consensus_3973#1 GGATGGCTCCAGGAGGTGCTTTCTCCATTACAGGACTACCTGCTGAAAACTTGAGAAGAC 375 ************************************************************ consensus_3973#0 TTTACCGTCTCTGCAAGACTACAATGGTCAAGAACTCAAGATCACTATCATGTATATCAT 720 consensus_3973#1 TTTACCGTCTCTGCAAGACTACNATGGTCAAGAACTCAAGATCACTATCATGTATATCAT 435 ********************** ************************************* consensus_3973#0 AGTATGATACTTGGAAGTATTTGAACCGTCTAATTTGATGCGTTTCATGACGCGTTTATC 780 consensus_3973#1 AGTATGATACTTGGAAGTATTTGAACCGTCTAATTTGATGCGTTTCATGACGCGTTTATC 495 ************************************************************ consensus_3973#0 GCAGATGGATCCAAAACCATATATGGAATGATTCGTAGGTGGTTTGTAGAATGAACAGTC 840 consensus_3973#1 GCAGATGGATCCAAAACCATATATGGAATGATTCGTAGGTGGTTTGTAGAATGAACAGTC 555 ************************************************************ consensus_3973#0 CATGGAATAGATTCCAGAAACTGTTAATGACTAATTGGCGCCGTTAGGAGCAAATCCTGA 900 consensus_3973#1 CATGGAATAGATTCCAGAAACTGTTAATGACTAATTGGCGCC------------------ 597 ****************************************** consensus_3973#0 TTGTTCAGCATCTGGGAATTTCTCTTTAATTGCCTCGAGCAAGCGATGGCAAGTCAACTC 960 consensus_3973#1 ------------------------------------------------------------ consensus_3973#0 TACTGATTATACTGAATTGGTCAGTACAATTACTGTATTCTAACGACTTGTATTAATCCT 1020 consensus_3973#1 ------------------------------------------------------------ consensus_3973#0 TGACTCGTCCGTGAAAATCGACTGCTCATACTC 1053 consensus_3973#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||