cluster # 3978

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Oryza sativa
cluster # 3978 cluster # 3978 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3978#0 length = 1000 sequences # 1

consensus_3978#1 length = 491 sequences # 2

consensusID : consensus_3978#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1000
fasta sequence

                              [GTCCTTAGCTTAGCTAGGACTAGGAGTAGTAGCTACCTAGCTGAAGCTTAGCTGCCTAGTGGGGAGTAGCTTAGCTTAGCTAGCTAGCTAGCTATAGGCGAGATGCTGGGCTGCTTCTCCCGGCTGCGGCGGCCGGCGTCGGCGGGGGCGGCGCCGGCGCCCATGGCGCAGTCTGACGACGCGTCGACGTCGACCTCGGCTGGCGGCGGCGGCGGCTGCACCGCGGAGACCTCGCCGTGCTCCTCGTCCTCCTCGCTCCGGTGCAAGAACTCGGGCGGCGTCGGCGGTGAAGACGACGACGATGGTGTCGGCGGCGGCGGCGCCGTCGTCGCTGAGAACGCCTCGGCGCTGTCCGACTCCGGGCTGTCGTCGGCCATCGCGTCGCGCCGGTTCTTCCTCTCCTCGCCCGGCAGGTCCAACTCCATCGTCGACTCGTCGGCGCACGGCGCCGCCGTCGGCGTGGGCGCGGCCGGGGTGGCGGTGCCGACGTACTCGCCGGACCCGCACGCCGACTTCCTCAGGTCGATGGAGGAGATGGTGGCGGCGCTGCGGCTGGACGCGCGCCGCCGCGGCGACAGGGCGCGGCTCCACGAGCTGCTCCTCTGCTACCTCGCGCTCAACGACCGGCGCGCCCACAAGTACGTCGTCAGCGCCTTCACCGACCTCCTCCTCCGCATCACCGCCGCCGCCAACCTCGACGACGGCGAGCCGCCGCGCCATGGCCGCCACCTGCACGAGTCACATTGAACCCTTTTGCTTTCTTGATTTCTTAATTCTCTTCCATTTTTTTGATTTTTTTTTGGGTCTCACTTTTCTATTTGAATTGCTGCGTACGAACAGATTTTTGGTACGAGATTCTTCGAACGATCGACTGAAAATCTCGTTGCATGCAAAATCGCAAGCAAAATGTTTTGTACTCTAAAATGTCGGGGTCGTCTAGCTAGCTGTAAATATGTCTGGAAATTTCGTACCAAAGTTCAGTTCGTATGCAAAAGCTTTT]

[+] EMBL AK108557             [GTCCTTAGCTTAGCTAGGACTAGGAGTAGTAGCTACCTAGCTGAAGCTTAGCTGCCTAGTGGGGAGTAGCTTAGCTTAGCTAGCTAGCTAGCTATAGGCGAGATGCTGGGCTGCTTCTCCCGGCTGCGGCGGCCGGCGTCGGCGGGGGCGGCGCCGGCGCCCATGGCGCAGTCTGACGACGCGTCGACGTCGACCTCGGCTGGCGGCGGCGGCGGCTGCACCGCGGAGACCTCGCCGTGCTCCTCGTCCTCCTCGCTCCGGTGCAAGAACTCGGGCGGCGTCGGCGGTGAAGACGACGACGATGGTGTCGGCGGCGGCGGCGCCGTCGTCGCTGAGAACGCCTCGGCGCTGTCCGACTCCGGGCTGTCGTCGGCCATCGCGTCGCGCCGGTTCTTCCTCTCCTCGCCCGGCAGGTCCAACTCCATCGTCGACTCGTCGGCGCACGGCGCCGCCGTCGGCGTGGGCGCGGCCGGGGTGGCGGTGCCGACGTACTCGCCGGACCCGCACGCCGACTTCCTCAGGTCGATGGAGGAGATGGTGGCGGCGCTGCGGCTGGACGCGCGCCGCCGCGGCGACAGGGCGCGGCTCCACGAGCTGCTCCTCTGCTACCTCGCGCTCAACGACCGGCGCGCCCACAAGTACGTCGTCAGCGCCTTCACCGACCTCCTCCTCCGCATCACCGCCGCCGCCAACCTCGACGACGGCGAGCCGCCGCGCCATGGCCGCCACCTGCACGAGTCACATTGAACCCTTTTGCTTTCTTGATTTCTTAATTCTCTTCCATTTTTTTGATTTTTTTTTGGGTCTCACTTTTCTATTTGAATTGCTGCGTACGAACAGATTTTTGGTACGAGATTCTTCGAACGATCGACTGAAAATCTCGTTGCATGCAAAATCGCAAGCAAAATGTTTTGTACTCTAAAATGTCGGGGTCGTCTAGCTAGCTGTAAATATGTCTGGAAATTTCGTACCAAAGTTCAGTTCGTATGCAAAAGCTTTT]




>consensus_3978#0
GTCCTTAGCTTAGCTAGGACTAGGAGTAGTAGCTACCTAGCTGAAGCTTAGCTGCCTAGT
GGGGAGTAGCTTAGCTTAGCTAGCTAGCTAGCTATAGGCGAGATGCTGGGCTGCTTCTCC
CGGCTGCGGCGGCCGGCGTCGGCGGGGGCGGCGCCGGCGCCCATGGCGCAGTCTGACGAC
GCGTCGACGTCGACCTCGGCTGGCGGCGGCGGCGGCTGCACCGCGGAGACCTCGCCGTGC
TCCTCGTCCTCCTCGCTCCGGTGCAAGAACTCGGGCGGCGTCGGCGGTGAAGACGACGAC
GATGGTGTCGGCGGCGGCGGCGCCGTCGTCGCTGAGAACGCCTCGGCGCTGTCCGACTCC
GGGCTGTCGTCGGCCATCGCGTCGCGCCGGTTCTTCCTCTCCTCGCCCGGCAGGTCCAAC
TCCATCGTCGACTCGTCGGCGCACGGCGCCGCCGTCGGCGTGGGCGCGGCCGGGGTGGCG
GTGCCGACGTACTCGCCGGACCCGCACGCCGACTTCCTCAGGTCGATGGAGGAGATGGTG
GCGGCGCTGCGGCTGGACGCGCGCCGCCGCGGCGACAGGGCGCGGCTCCACGAGCTGCTC
CTCTGCTACCTCGCGCTCAACGACCGGCGCGCCCACAAGTACGTCGTCAGCGCCTTCACC
GACCTCCTCCTCCGCATCACCGCCGCCGCCAACCTCGACGACGGCGAGCCGCCGCGCCAT
GGCCGCCACCTGCACGAGTCACATTGAACCCTTTTGCTTTCTTGATTTCTTAATTCTCTT
CCATTTTTTTGATTTTTTTTTGGGTCTCACTTTTCTATTTGAATTGCTGCGTACGAACAG
ATTTTTGGTACGAGATTCTTCGAACGATCGACTGAAAATCTCGTTGCATGCAAAATCGCA
AGCAAAATGTTTTGTACTCTAAAATGTCGGGGTCGTCTAGCTAGCTGTAAATATGTCTGG
AAATTTCGTACCAAAGTTCAGTTCGTATGCAAAAGCTTTT

consensusID : consensus_3978#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 491
fasta sequence

                              [AGAGGACGAGACAAGGGGATCGCAAGCAAAATGTTTTGTACTCTAAAATGTNGGGGTCGTCTAGCTAGCTGTAAATATGTCTGGAAATTTCGTACCAAAGTTCAGTTCGTATGCAAAAGCTTTTCACTTTTTCTAAGGCGTGAGCGTGTTGGTGAAGACAGTATGATATCGGCTTCCCCAAATGTGCTGCTTTGTGTTTGCCTTTTTGGCCATCTTTGTGAGTCATCTTTTCACTGTTTCGCTCATTTCATCTTTCCTGCTCTCTCTCTCTGCTGGTTATCTGAACTTCCTACTAATTATAAGGCTGAATTTGTTGTTGTGTGGTTGATGTTGTAATAAGCTGTATTAACCATTATGATTGCTACTAGTACTAAATATTTGGGATGTGTATGTACAATCTTATTGGCTTTCCATCACAATCTCTGCCACTAATTGTATATGTCTTCAGAGAATTCAGCATTCTGTTTACTTCTTACCAAAAAAAAAAAAAA]

[-] EMBL CA761671             [AGAGGACGAGACAAGGGGATCGCAAGCAAAATGTTTTGTACTCTAAAATGTNGGGGTCGTCTAGCTAGCTGTAAATATGTCTGGAAATTTCGTACCAAAGTTCAGTTCGTATGCAAAAGCTTTTCACTTTTTCTAAGGCGTGAGCGTGTTGGTGAAGACAGTATGATATCGGCTTCCCCAAATGTGCTGCTTTGTGTTTGCCTTTTTGGCCATCTTTGTGAGTCATCTTTTCACTGTTTCGCTCATTTCATCTTTCCTGCTCTCTCTCTCTGCTGGTTATCTGAACTTCCTACTAATTATAAGGCTGAATTTGTTGTTGTGTGGTTGATGTTGTAATAAGCTGTATTAACCATTATGATTGCTACTAGTACTAAATATTTGGGATGTGTATGTACAATCTTATTGGCTTTCCATCACAATCTCTGCCACTAATTGTATATGTCTTCAGAGAATTCAGCATTCTGTTTACTTCTTACCAAAAAAAAAAAAAA]
[-] EMBL OS38034              [                                                        TCGTCTAGCTAGCTG AAATATGGTGGGAAATTCCGTACCAAAGTTCAGTTCGTATGCAAAAGCTTTTCACTTTTTCTAAGGCGTGAGCGTGTTGGTGAAGACAGTATGATATGGGCTTCCCCAAATGTGCTGCTTTGTGTTTGCCTTTTTGGCCATCTTTGTGAGTCA                                                                                                                                                                                                                                                                          ]




>consensus_3978#1
AGAGGACGAGACAAGGGGATCGCAAGCAAAATGTTTTGTACTCTAAAATGTNGGGGTCGT
CTAGCTAGCTGTAAATATGTCTGGAAATTTCGTACCAAAGTTCAGTTCGTATGCAAAAGC
TTTTCACTTTTTCTAAGGCGTGAGCGTGTTGGTGAAGACAGTATGATATCGGCTTCCCCA
AATGTGCTGCTTTGTGTTTGCCTTTTTGGCCATCTTTGTGAGTCATCTTTTCACTGTTTC
GCTCATTTCATCTTTCCTGCTCTCTCTCTCTGCTGGTTATCTGAACTTCCTACTAATTAT
AAGGCTGAATTTGTTGTTGTGTGGTTGATGTTGTAATAAGCTGTATTAACCATTATGATT
GCTACTAGTACTAAATATTTGGGATGTGTATGTACAATCTTATTGGCTTTCCATCACAAT
CTCTGCCACTAATTGTATATGTCTTCAGAGAATTCAGCATTCTGTTTACTTCTTACCAAA
AAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3978#0      GTCCTTAGCTTAGCTAGGACTAGGAGTAGTAGCTACCTAGCTGAAGCTTAGCTGCCTAGT 60
consensus_3978#1      ------------------------------------------------------------
                                                                                  

consensus_3978#0      GGGGAGTAGCTTAGCTTAGCTAGCTAGCTAGCTATAGGCGAGATGCTGGGCTGCTTCTCC 120
consensus_3978#1      ------------------------------------------------------------
                                                                                  

consensus_3978#0      CGGCTGCGGCGGCCGGCGTCGGCGGGGGCGGCGCCGGCGCCCATGGCGCAGTCTGACGAC 180
consensus_3978#1      ------------------------------------------------------------
                                                                                  

consensus_3978#0      GCGTCGACGTCGACCTCGGCTGGCGGCGGCGGCGGCTGCACCGCGGAGACCTCGCCGTGC 240
consensus_3978#1      ------------------------------------------------------------
                                                                                  

consensus_3978#0      TCCTCGTCCTCCTCGCTCCGGTGCAAGAACTCGGGCGGCGTCGGCGGTGAAGACGACGAC 300
consensus_3978#1      ------------------------------------------------------------
                                                                                  

consensus_3978#0      GATGGTGTCGGCGGCGGCGGCGCCGTCGTCGCTGAGAACGCCTCGGCGCTGTCCGACTCC 360
consensus_3978#1      ------------------------------------------------------------
                                                                                  

consensus_3978#0      GGGCTGTCGTCGGCCATCGCGTCGCGCCGGTTCTTCCTCTCCTCGCCCGGCAGGTCCAAC 420
consensus_3978#1      ------------------------------------------------------------
                                                                                  

consensus_3978#0      TCCATCGTCGACTCGTCGGCGCACGGCGCCGCCGTCGGCGTGGGCGCGGCCGGGGTGGCG 480
consensus_3978#1      --------------------------------------AGAGGACGAGACAAGGGGATCG 22
                                                             * ** ** * *  ***   **

consensus_3978#0      GTGCCGACGTACTCGCCGGACCCGCACGCCGACTTCCTCAGGTCGATGGAGGAGATGG-T 539
consensus_3978#1      CAAGCAAAATGTTTTGTACTCTAAAATGTNGGGGTCGTCTAGCTAGCTGTAAATATGTCT 82
                          * *  *  *       *    * *  *   ** **  *      *   * ***  *

consensus_3978#0      GGCGGCGCTGCGGCTGGACGCGCGCCGC-CGCGGCGACAGGGCGCGGCTCCACGAGCTGC 598
consensus_3978#1      GGAAATTTCGTACCAAAGTTCAGTTCGTATGCAAAAGCTTTTCACTTTTTC-TAAGGCGT 141
                      **       *   *      *    **   **     *    * *   * *   **  * 

consensus_3978#0      TCCTCTGCTACCTCGCGCTCAACGACCGGCGCGCCCACAAGTACGTCGTCAGCGCCTTCA 658
consensus_3978#1      GAGCGTGTTGGTGAAGACAGTATGATATCGGCTTCCCCAAATGTGCTGCTT-TGTGTTTG 200
                           ** *        *   * **     **  ** *** *  *  *     *  **  

consensus_3978#0      CCGACCTCCTCCTCCGCATCACCGCCGCCGCCAACCTCGACGACGGCGAGCCGCCGCGCC 718
consensus_3978#1      CCTTTTTGGCCATCTTTGTGA--GTCATCTTT--TCACTGTTTCGCTCATTTCATCTTTC 256
                      **    *   * **    * *  * *  *      * *     **   *          *

consensus_3978#0      ATGGCCGCCACCTGCACGAGTCACATTGAACCCTTTTGCTTTCTTGATTTCTTAATTCTC 778
consensus_3978#1      CTGCTCTCTCTCTCTGCTGGTTAT-CTGAACT-TCCTACTAATTATAAGGCTGAATTTGT 314
                       **  * *   **   *  ** *   *****  *  * **   *  *   ** ****   

consensus_3978#0      TTCCATTTTTTTGATTTTTTTTTGGGTCTCACTTTTCTATTTGAATTGCTGCGTACGAAC 838
consensus_3978#1      TGTTGTGTGGTTGATGTTGTAATAAGCTGTA-TTAACCATTATGATTGCTAC-TAGTACT 372
                      *    * *  ***** ** *  *  *    * **  * ***   ****** * **  *  

consensus_3978#0      AGATTTTTGGTACGAGATTCTTCGAACGATCGACTGAAAATCTCGTTGCATGCAAAATCG 898
consensus_3978#1      AAATATTTGGGATGTG----TATGTACAATCTTATTGGCTTTCCATCACAATCTCTGCCA 428
                      * ** ***** * * *    *  * ** ***   *     *  * *  **  *     * 

consensus_3978#0      CAAGCAAAATGTTTTGTACTCTAAAATGTCGGGGTCGT-CTAGCTAGCTGTAAATATGTC 957
consensus_3978#1      CTAATTGTATAT---GTCTTCAGAGAATTCAGCATTCTGTTTACTTCTTACCAAAAAAAA 485
                      * *     ** *   **  **  * *  ** *  *  *  *  **   *   ** *    

consensus_3978#0      TGGAAATTTCGTACCAAAGTTCAGTTCGTATGCAAAAGCTTTT 1000
consensus_3978#1      AAAAAA------------------------------------- 491
                         ***