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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3984#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1564 fasta sequence
[GTTTTGCCACGGAGAAGGGTCACCTGGGAAATTATTGTTTAGGCTGACGTGATGCTCCAGGGAGTCCTGTCGCGAGCTCCCGGCGCCGACGCGGCAGCGATGAAGGCGAAGCGCGCGGCCGACGACGAGGAGGAAGGCGGCGAGCGGGAGCGCGCGCGTGGGAAGCGGCTGGCTGCTGAGGGGAAGCAAGGGTTAGTGGTGGTGAGTACGGGGGAGGAGGAGGAGGCGGCGGCGGAGACGCGTGGGCTGCGGCTGCTTAGTTTGTTGCTGAGGTGTGCGGAGGCGGTGGCGATGGACCAGCTGCCGGAGGCGCGGGACCTGCTGCCGGAGATCGCCGAGCTGGCGTCGCCGTTCGGGTCGTCGCCCGAGCGCGTCGCGGCCTACTTCGGGGACGCGCTGTGCGCGCGCGTGCTGAGCTCCTACCTGGGGGCCTACTCGCCGCTGGCGCTCCGCCCGCTCGCCGCCGCGCAGAGCCGCCGCATCTCCGGCGCGTTCCAGGCGTACAACGCGCTGTCGCCGCTCGTCAAGTTCTCGCACTTCACGGCCAACCAGGCCATCTTCCAGGCGCTCGACGGCGAGGACCGCGTCCACGTGATCGACCTCGACATCATGCAGGGGCTGCAGTGGCCGGGCCTCTTCCACATCCTCGCCTCCCGCCCCACCAAGCCGCGCTCGCTCCGGATCACCGGCCTCGGCGCGTCGCTCGACGTCCTCGAGGCCACCGGCCGCCGCCTCGCCGACTTCGCCGCGTCGCTCGGCTTGCCCTTCGAGTTCCGGCCCATCGAGGGGAAGATCGGGCACGTCGCCGACGCCGCCGCGCTCCTCGGCCCGCGCCACCACGGGGAGGCCACCGTTGTGCACTGGATGCACCACTGCCTCTACGACGTGACGGGCTCCGACGCCGGCACGGTGCGCCTGCTCAAGAGCCTCCGGCCGAAGCTGATCACCATCGTGGAGCAGGACCTCGGCCACAGCGGCGACTTCCTGGGCCGCTTCGTGGAGGCGCTGCACTACTACTCGGCGCTGTTCGACGCGCTGGGCGACGGCGCGGGGGCCGCCGAGGAGGAGGCGGCGGAGCGGCACGCGGTGGAGCGTCAGCTCCTCGGCGCGGAGATACGGAACATCGTCGCCGTCGGGGGCCCCAAGCGCACCGGCGAGGTGCGCGTCGAGCGGTGGGGCGACGAGCTGCGGCGAGCGGGGTTCCGGCCGGTGACCCTGGCCGGCAGCCCCGCCGCGCAGGCGAGGCTGCTTCTTGGCATGTACCCATGGAAGGGCTACACTCTCGTCGAAGAGGACGGCTGCCTCAAGTTCGGGTGGAAGGACCTGTCCCTGCTCACCGCCTCGTCGTGGGAGCCGACAGACGGCGACGCCGACGCCGACGTCGCCGTCGCCGGCGATACCCACCATGAGAGCCACGATTCTTGATCACATGATCGCAGTAGCAGCCAGGTCGATTCACCTGTCGCAGCTTTTTTTGGTCATATTCATTATCCTCTTTCTGCTAGCTACTTCATTCGATCGTTCTTCCTCCTGTGAGTAGTATTTTGGCCGATGATTAAGCTTG]
[+] EMBL AK120140 [GTTTTGCCACGGAGAAGGGTCACCTGGGAAATTATTGTTTAGGCTGACGTGATGCTCCAGGGAGTCCTGTCGCGAGCTCCCGGCGCCGACGCGGCAGCGATGAAGGCGAAGCGCGCGGCCGACGACGAGGAGGAAGGCGGCGAGCGGGAGCGCGCGCGTGGGAAGCGGCTGGCTGCTGAGGGGAAGCAAGGGTTAGTGGTGGTGAGTACGGGGGAGGAGGAGGAGGCGGCGGCGGAGACGCGTGGGCTGCGGCTGCTTAGTTTGTTGCTGAGGTGTGCGGAGGCGGTGGCGATGGACCAGCTGCCGGAGGCGCGGGACCTGCTGCCGGAGATCGCCGAGCTGGCGTCGCCGTTCGGGTCGTCGCCCGAGCGCGTCGCGGCCTACTTCGGGGACGCGCTGTGCGCGCGCGTGCTGAGCTCCTACCTGGGGGCCTACTCGCCGCTGGCGCTCCGCCCGCTCGCCGCCGCGCAGAGCCGCCGCATCTCCGGCGCGTTCCAGGCGTACAACGCGCTGTCGCCGCTCGTCAAGTTCTCGCACTTCACGGCCAACCAGGCCATCTTCCAGGCGCTCGACGGCGAGGACCGCGTCCACGTGATCGACCTCGACATCATGCAGGGGCTGCAGTGGCCGGGCCTCTTCCACATCCTCGCCTCCCGCCCCACCAAGCCGCGCTCGCTCCGGATCACCGGCCTCGGCGCGTCGCTCGACGTCCTCGAGGCCACCGGCCGCCGCCTCGCCGACTTCGCCGCGTCGCTCGGCTTGCCCTTCGAGTTCCGGCCCATCGAGGGGAAGATCGGGCACGTCGCCGACGCCGCCGCGCTCCTCGGCCCGCGCCACCACGGGGAGGCCACCGTTGTGCACTGGATGCACCACTGCCTCTACGACGTGACGGGCTCCGACGCCGGCACGGTGCGCCTGCTCAAGAGCCTCCGGCCGAAGCTGATCACCATCGTGGAGCAGGACCTCGGCCACAGCGGCGACTTCCTGGGCCGCTTCGTGGAGGCGCTGCACTACTACTCGGCGCTGTTCGACGCGCTGGGCGACGGCGCGGGGGCCGCCGAGGAGGAGGCGGCGGAGCGGCACGCGGTGGAGCGTCAGCTCCTCGGCGCGGAGATACGGAACATCGTCGCCGTCGGGGGCCCCAAGCGCACCGGCGAGGTGCGCGTCGAGCGGTGGGGCGACGAGCTGCGGCGAGCGGGGTTCCGGCCGGTGACCCTGGCCGGCAGCCCCGCCGCGCAGGCGAGGCTGCTTCTTGGCATGTACCCATGGAAGGGCTACACTCTCGTCGAAGAGGACGGCTGCCTCAAGTTCGGGTGGAAGGACCTGTCCCTGCTCACCGCCTCGTCGTGGGAGCCGACAGACGGCGACGCCGACGCCGACGTCGCCGTCGCCGGCGATACCCACCATGAGAGCCACGATTCTTGATCACATGATCGCAGTAGCAGCCAGGTCGATTCACCTGTCGCAGCTTTTTTTGGTCATATTCATTATCCTCTTTCTGCTAGCTACTTCATTCGATCGTTCTTCCTCCTGTGAGTAGTATTTTGGCCGATGATTAAGCTTG]
consensusID : consensus_3984#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1214 fasta sequence
[TGTTGCAGTGGTTTTGCCACGGAGAAGGGTCACCGGGAAATTATTGTTTAGGCTGACGTGATGCTCCAGGGAGTCCTGTCGCGAGCTCCCGGCGCCGACGCGGCAGCGATGAAGGCGAAGCGCGCGGCCGACGACGAGGAGGAAGGCGGCGAGCGGGAGCGCGCGCGTGGGAAGCGGCTGGCTGCTGAGGGGAAGCAAGGGTTAGTGGTGGTGAGTACGGGGGAGGAGGAGGAGGCGGCGGCGGAGACGCGTGGGCTGCGGCTGCTTAGTTTGTTGCTGAGGTGTGCGGAGGCGGTGGCGATGGACCAGCTGCCGGAGGCGCGGGACCTGCTGCCGGAGATCGCCGAGCTGGCGTCGCCGTTCGGGTCGTCGCCCGAGCGCGTCGCGGCCCACCACGGGGAGGCCACCGTTGTGCACTGGATGCACCACTGCCTCTACGACGTGACGGGCTCCGACGCCGGCACGGTGCGCCTGCTCAAGAGCCTCCGGCCGAAGCTGATCACCATCGTGGAGCAGGACCTCGGCCACAGCGGCGACTTCCTGGGCCGCTTCGTGGAGGCGCTGCACTACTACTCGGCGCTGTTCGACGCGCTGGGCGACGGCGCGGGGGCCGCCGAGGAGGAGGCGGCGGAGCGGCACGCGGTGGAGCGTCAGCTCCTCGGCGCGGAGATACGGAACATCGTCGCCGTCGGGGGCCCCAAGCGCACCGGCGAGGTGCGCGTCGAGCGGTGGGGCGACGAGCTGCGGCGAGCGGGGTTCCGGCCGGTGACCCTGGCCGGCAGCCCCGCCGCGCAGGCGAGGCTGCTTCTTGGCATGTACCCATGGAAGGGCTACACTCTCGTCGAAGAGGACGGCTGCCTCAAGCTCGGGTGGAAGGACCTGTCCCTGCTCACCGCCTCGTCGTGGGAGCCGACAGACGGCGACGCCGACGCCGACGTCGCCGTCGCCGGCGATACCCACCATGAGAGCCACGATTCTTGATCACATGATCGCAGTAGCAGCCAGGTCGATTCACCTGTCGCAGCTTTTCTTGGTCATATTCATTATCCTCTTTCTGCTAGCTACTTCATTCGATCGTTCTTCCTCCTGTGAGTAGTATTTTGGCCGATGATTAAGCTTGTAATATAATCGTATAGGCTTCATCATTCGTTCCCTCTCCAGGTTGCCATGAACAACACCATTTCAATTACAAAATAGAACTCTTCTACCTCCAA]
[+] EMBL AK061242 [TGTTGCAGTGGTTTTGCCACGGAGAAGGGTCACCGGGAAATTATTGTTTAGGCTGACGTGATGCTCCAGGGAGTCCTGTCGCGAGCTCCCGGCGCCGACGCGGCAGCGATGAAGGCGAAGCGCGCGGCCGACGACGAGGAGGAAGGCGGCGAGCGGGAGCGCGCGCGTGGGAAGCGGCTGGCTGCTGAGGGGAAGCAAGGGTTAGTGGTGGTGAGTACGGGGGAGGAGGAGGAGGCGGCGGCGGAGACGCGTGGGCTGCGGCTGCTTAGTTTGTTGCTGAGGTGTGCGGAGGCGGTGGCGATGGACCAGCTGCCGGAGGCGCGGGACCTGCTGCCGGAGATCGCCGAGCTGGCGTCGCCGTTCGGGTCGTCGCCCGAGCGCGTCGCGGCCCACCACGGGGAGGCCACCGTTGTGCACTGGATGCACCACTGCCTCTACGACGTGACGGGCTCCGACGCCGGCACGGTGCGCCTGCTCAAGAGCCTCCGGCCGAAGCTGATCACCATCGTGGAGCAGGACCTCGGCCACAGCGGCGACTTCCTGGGCCGCTTCGTGGAGGCGCTGCACTACTACTCGGCGCTGTTCGACGCGCTGGGCGACGGCGCGGGGGCCGCCGAGGAGGAGGCGGCGGAGCGGCACGCGGTGGAGCGTCAGCTCCTCGGCGCGGAGATACGGAACATCGTCGCCGTCGGGGGCCCCAAGCGCACCGGCGAGGTGCGCGTCGAGCGGTGGGGCGACGAGCTGCGGCGAGCGGGGTTCCGGCCGGTGACCCTGGCCGGCAGCCCCGCCGCGCAGGCGAGGCTGCTTCTTGGCATGTACCCATGGAAGGGCTACACTCTCGTCGAAGAGGACGGCTGCCTCAAGCTCGGGTGGAAGGACCTGTCCCTGCTCACCGCCTCGTCGTGGGAGCCGACAGACGGCGACGCCGACGCCGACGTCGCCGTCGCCGGCGATACCCACCATGAGAGCCACGATTCTTGATCACATGATCGCAGTAGCAGCCAGGTCGATTCACCTGTCGCAGCTTTTCTTGGTCATATTCATTATCCTCTTTCTGCTAGCTACTTCATTCGATCGTTCTTCCTCCTGTGAGTAGTATTTTGGCCGATGATTAAGCTTGTAATATAATCGTATAGGCTTCATCATTCGTTCCCTCTCCAGGTTGCCATGAACAACACCATTTCAATTACAAAATAGAACTCTTCTACCTCCAA]
[+] EMBL AK059008 [ ATGGAAGGGCTACACTCTCGTCGAAGAGGACGGCTGCCTCAAGCTCGGGTGGAAGGACCTGTCCCTGCTCACCGCCTCGTCGTGGGAGCCGACAGACGGCGACGCCGACGCCGACGTCGCCGTCGCCGGCGATACCCACCATGAGAGCCACGATTCTTGATCACATGATCGCAGTAGCAGCCAGGTCGATTCACCTGTCGCAGCTTTTCTTGGTCATATTCATTATCCTCTTTCTGCTAGCTACTTCATTCGATCGTTCTTCCTCCTGTGAGTAGTATTTTGGCCGATGATTAAGCTTGTAATATAATCGTATAGGCTTCATCATTCGTTCCCTCTCCAGGTTGCCATGAACAACACCATTTCAATTACAAAATAGAACTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3984#0 ----------GTTTTGCCACGGAGAAGGGTCACCTGGGAAATTATTGTTTAGGCTGACGT 50
consensus_3984#1 TGTTGCAGTGGTTTTGCCACGGAGAAGGGTCACC-GGGAAATTATTGTTTAGGCTGACGT 59
************************ *************************
consensus_3984#0 GATGCTCCAGGGAGTCCTGTCGCGAGCTCCCGGCGCCGACGCGGCAGCGATGAAGGCGAA 110
consensus_3984#1 GATGCTCCAGGGAGTCCTGTCGCGAGCTCCCGGCGCCGACGCGGCAGCGATGAAGGCGAA 119
************************************************************
consensus_3984#0 GCGCGCGGCCGACGACGAGGAGGAAGGCGGCGAGCGGGAGCGCGCGCGTGGGAAGCGGCT 170
consensus_3984#1 GCGCGCGGCCGACGACGAGGAGGAAGGCGGCGAGCGGGAGCGCGCGCGTGGGAAGCGGCT 179
************************************************************
consensus_3984#0 GGCTGCTGAGGGGAAGCAAGGGTTAGTGGTGGTGAGTACGGGGGAGGAGGAGGAGGCGGC 230
consensus_3984#1 GGCTGCTGAGGGGAAGCAAGGGTTAGTGGTGGTGAGTACGGGGGAGGAGGAGGAGGCGGC 239
************************************************************
consensus_3984#0 GGCGGAGACGCGTGGGCTGCGGCTGCTTAGTTTGTTGCTGAGGTGTGCGGAGGCGGTGGC 290
consensus_3984#1 GGCGGAGACGCGTGGGCTGCGGCTGCTTAGTTTGTTGCTGAGGTGTGCGGAGGCGGTGGC 299
************************************************************
consensus_3984#0 GATGGACCAGCTGCCGGAGGCGCGGGACCTGCTGCCGGAGATCGCCGAGCTGGCGTCGCC 350
consensus_3984#1 GATGGACCAGCTGCCGGAGGCGCGGGACCTGCTGCCGGAGATCGCCGAGCTGGCGTCGCC 359
************************************************************
consensus_3984#0 GTTCGGGTCGTCGCCCGAGCGCGTCGCGGCCTACTTCGGGGACGCGCTGTGCGCGCGCGT 410
consensus_3984#1 GTTCGGGTCGTCGCCCGAGCGCGTCGCGGCC----------------------------- 390
*******************************
consensus_3984#0 GCTGAGCTCCTACCTGGGGGCCTACTCGCCGCTGGCGCTCCGCCCGCTCGCCGCCGCGCA 470
consensus_3984#1 ------------------------------------------------------------
consensus_3984#0 GAGCCGCCGCATCTCCGGCGCGTTCCAGGCGTACAACGCGCTGTCGCCGCTCGTCAAGTT 530
consensus_3984#1 ------------------------------------------------------------
consensus_3984#0 CTCGCACTTCACGGCCAACCAGGCCATCTTCCAGGCGCTCGACGGCGAGGACCGCGTCCA 590
consensus_3984#1 ------------------------------------------------------------
consensus_3984#0 CGTGATCGACCTCGACATCATGCAGGGGCTGCAGTGGCCGGGCCTCTTCCACATCCTCGC 650
consensus_3984#1 ------------------------------------------------------------
consensus_3984#0 CTCCCGCCCCACCAAGCCGCGCTCGCTCCGGATCACCGGCCTCGGCGCGTCGCTCGACGT 710
consensus_3984#1 ------------------------------------------------------------
consensus_3984#0 CCTCGAGGCCACCGGCCGCCGCCTCGCCGACTTCGCCGCGTCGCTCGGCTTGCCCTTCGA 770
consensus_3984#1 ------------------------------------------------------------
consensus_3984#0 GTTCCGGCCCATCGAGGGGAAGATCGGGCACGTCGCCGACGCCGCCGCGCTCCTCGGCCC 830
consensus_3984#1 ------------------------------------------------------------
consensus_3984#0 GCGCCACCACGGGGAGGCCACCGTTGTGCACTGGATGCACCACTGCCTCTACGACGTGAC 890
consensus_3984#1 ----CACCACGGGGAGGCCACCGTTGTGCACTGGATGCACCACTGCCTCTACGACGTGAC 446
********************************************************
consensus_3984#0 GGGCTCCGACGCCGGCACGGTGCGCCTGCTCAAGAGCCTCCGGCCGAAGCTGATCACCAT 950
consensus_3984#1 GGGCTCCGACGCCGGCACGGTGCGCCTGCTCAAGAGCCTCCGGCCGAAGCTGATCACCAT 506
************************************************************
consensus_3984#0 CGTGGAGCAGGACCTCGGCCACAGCGGCGACTTCCTGGGCCGCTTCGTGGAGGCGCTGCA 1010
consensus_3984#1 CGTGGAGCAGGACCTCGGCCACAGCGGCGACTTCCTGGGCCGCTTCGTGGAGGCGCTGCA 566
************************************************************
consensus_3984#0 CTACTACTCGGCGCTGTTCGACGCGCTGGGCGACGGCGCGGGGGCCGCCGAGGAGGAGGC 1070
consensus_3984#1 CTACTACTCGGCGCTGTTCGACGCGCTGGGCGACGGCGCGGGGGCCGCCGAGGAGGAGGC 626
************************************************************
consensus_3984#0 GGCGGAGCGGCACGCGGTGGAGCGTCAGCTCCTCGGCGCGGAGATACGGAACATCGTCGC 1130
consensus_3984#1 GGCGGAGCGGCACGCGGTGGAGCGTCAGCTCCTCGGCGCGGAGATACGGAACATCGTCGC 686
************************************************************
consensus_3984#0 CGTCGGGGGCCCCAAGCGCACCGGCGAGGTGCGCGTCGAGCGGTGGGGCGACGAGCTGCG 1190
consensus_3984#1 CGTCGGGGGCCCCAAGCGCACCGGCGAGGTGCGCGTCGAGCGGTGGGGCGACGAGCTGCG 746
************************************************************
consensus_3984#0 GCGAGCGGGGTTCCGGCCGGTGACCCTGGCCGGCAGCCCCGCCGCGCAGGCGAGGCTGCT 1250
consensus_3984#1 GCGAGCGGGGTTCCGGCCGGTGACCCTGGCCGGCAGCCCCGCCGCGCAGGCGAGGCTGCT 806
************************************************************
consensus_3984#0 TCTTGGCATGTACCCATGGAAGGGCTACACTCTCGTCGAAGAGGACGGCTGCCTCAAGTT 1310
consensus_3984#1 TCTTGGCATGTACCCATGGAAGGGCTACACTCTCGTCGAAGAGGACGGCTGCCTCAAGCT 866
********************************************************** *
consensus_3984#0 CGGGTGGAAGGACCTGTCCCTGCTCACCGCCTCGTCGTGGGAGCCGACAGACGGCGACGC 1370
consensus_3984#1 CGGGTGGAAGGACCTGTCCCTGCTCACCGCCTCGTCGTGGGAGCCGACAGACGGCGACGC 926
************************************************************
consensus_3984#0 CGACGCCGACGTCGCCGTCGCCGGCGATACCCACCATGAGAGCCACGATTCTTGATCACA 1430
consensus_3984#1 CGACGCCGACGTCGCCGTCGCCGGCGATACCCACCATGAGAGCCACGATTCTTGATCACA 986
************************************************************
consensus_3984#0 TGATCGCAGTAGCAGCCAGGTCGATTCACCTGTCGCAGCTTTTTTTGGTCATATTCATTA 1490
consensus_3984#1 TGATCGCAGTAGCAGCCAGGTCGATTCACCTGTCGCAGCTTTTCTTGGTCATATTCATTA 1046
******************************************* ****************
consensus_3984#0 TCCTCTTTCTGCTAGCTACTTCATTCGATCGTTCTTCCTCCTGTGAGTAGTATTTTGGCC 1550
consensus_3984#1 TCCTCTTTCTGCTAGCTACTTCATTCGATCGTTCTTCCTCCTGTGAGTAGTATTTTGGCC 1106
************************************************************
consensus_3984#0 GATGATTAAGCTTG---------------------------------------------- 1564
consensus_3984#1 GATGATTAAGCTTGTAATATAATCGTATAGGCTTCATCATTCGTTCCCTCTCCAGGTTGC 1166
**************
consensus_3984#0 ------------------------------------------------
consensus_3984#1 CATGAACAACACCATTTCAATTACAAAATAGAACTCTTCTACCTCCAA 1214
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||