cluster # 3987

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Oryza sativa
cluster # 3987 cluster # 3987 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3987#0 length = 782 sequences # 2

consensus_3987#1 length = 618 sequences # 1

consensusID : consensus_3987#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 782
fasta sequence

                              [CGTCGTCTACCTCGCGCCGCTCACCTCTCGCCGTCGTCGAAGCCACACGCGCGCCACAATTTCTTTTAATCCTCGGTGAGACGAGAGCACGAGACCCATCCCCAACGATCCCACATCCACGGCGCTGACTTCTCCAGCTCCACTCCACGTCTCCCAGCACGAGGGGAGGAGAAGAATCAAATCAAATCAATCAGTCGCAATCGAGGGGAATCCCACAATTCTGGACAATCCGAGACCCTGCCGCTCCGCTGGATTCCCCGACTCCCCTTCTTGGATTGGGCTAAACTGGGATGATTGGATTGCCGGCCGCGGTTTGAGCTGAGGAGATTCTTGCACACCAGGGGGGGAGGGATGGAGGTGAGCAAGGAGGAGTTCTTGAGGCAGTTCGGTGGCGACTATGGCTACCCGGGCGCGCCCAAGGGCGTCGACGAGATGCGCGCCGCCGAGTTCAAGCGGCTTGAAGGGATGGCTTACCTGGACCATGCCGGTGCGACGCTGTATTCAGAGGCGCAGATGGCGGATGTCTTGAAAGACCTTGCATCCAATGTATATGGGAACCCACATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCTCGTTACTGCTGCACGCCATCAGGTTTTAAAATACTTCAATGCATCTCCCAGAGAATACAAGTGCATATTTACCTCTGGGGCAACAGCAGCTCTGAAACTTGTTGGTGAATGTTTTCCATGGAGTAGAGAAAGCTGTTACATGTACACGATGGAGAATCACAATAGTGTGCTTGGGGATAGAGA]

[+] EMBL CF320287             [CGTCGTCTACCTCGCGCCGCTCACCTCTCGCCGTCGTCGAAGCCACACGCGCGCCACAATTTCTTTTAATCCTCGGTGAGACGAGAGCACGAGACCCATCCCCAACGATCCCACATCCACGGCGCTGACTTCTCCAGCTCCACTCCACGTCTCCCAGCACGAGGGGAGGAGAAGAATCAAATCAAATCAATCAGTCGCAATCGAGGGGAATCCCACAATTCTGGACAATCCGAGACCCTGCCGCTCCGCTGGATTCCCCGACTCCCCTTCTTGGATTGGGCTAAACTGGGATGATTGGATTGCCGGCCGCGGTTTGAGCTGAGGAGATTCTTGCACACCAGGGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB642109             [          CTCGCGCTGCTCACCTCTCGCCGTCGTCGAAGCCACACGCGCGCCACAATTTCTTTTAATCCTCGGTGAGACGAGAGCACGAGACCCATCCCCATTGATCCCACATCCACGGCGCTGACTTCTCCAGCTCCACTCCACGTTTCCCAGCACGAGGGGAGGAGAAGAATCAAATCAAATCAATCAGTCGCAATCGAGGGGAATCCCACAATTCTGGACAATCCGAGACCCTCCCGCTCCGCTGGATTCCCCGCCTCCCCTTCTTGGATTGGGCTCAGCTGGGATGATTGGATTGCCGGTCGCGGTTTGAGCTGAGGAGATTCTTGCAGTCGAGGGGGGGAGGGATGGAGGTGAGCAAGGAGGAGTTCTTGAGGCAGTTCGGTGGCGACTATGGCTACCCGGGCGCGCCCAAGGGCGTCGACGAGATGCGCGCCGCCGAGTTCAAGCGGCTTGAAGGGATGGCTTACCTGGACCATGCCGGTGCGACGCTGTATTCAGAGGCGCAGATGGCGGATGTCTTGAAAGACCTTGCATCCAATGTATATGGGAACCCACATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCTCGTTACTGCTGCACGCCATCAGGTTTTAAAATACTTCAATGCATCTCCCAGAGAATACAAGTGCATATTTACCTCTGGGGCAACAGCAGCTCTGAAACTTGTTGGTGAATGTTTTCCATGGAGTAGAGAAAGCTGTTACATGTACACGATGGAGAATCACAATAGTGTGCTTGGGGATAGAGA]




>consensus_3987#0
CGTCGTCTACCTCGCGCCGCTCACCTCTCGCCGTCGTCGAAGCCACACGCGCGCCACAAT
TTCTTTTAATCCTCGGTGAGACGAGAGCACGAGACCCATCCCCAACGATCCCACATCCAC
GGCGCTGACTTCTCCAGCTCCACTCCACGTCTCCCAGCACGAGGGGAGGAGAAGAATCAA
ATCAAATCAATCAGTCGCAATCGAGGGGAATCCCACAATTCTGGACAATCCGAGACCCTG
CCGCTCCGCTGGATTCCCCGACTCCCCTTCTTGGATTGGGCTAAACTGGGATGATTGGAT
TGCCGGCCGCGGTTTGAGCTGAGGAGATTCTTGCACACCAGGGGGGGAGGGATGGAGGTG
AGCAAGGAGGAGTTCTTGAGGCAGTTCGGTGGCGACTATGGCTACCCGGGCGCGCCCAAG
GGCGTCGACGAGATGCGCGCCGCCGAGTTCAAGCGGCTTGAAGGGATGGCTTACCTGGAC
CATGCCGGTGCGACGCTGTATTCAGAGGCGCAGATGGCGGATGTCTTGAAAGACCTTGCA
TCCAATGTATATGGGAACCCACATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCTC
GTTACTGCTGCACGCCATCAGGTTTTAAAATACTTCAATGCATCTCCCAGAGAATACAAG
TGCATATTTACCTCTGGGGCAACAGCAGCTCTGAAACTTGTTGGTGAATGTTTTCCATGG
AGTAGAGAAAGCTGTTACATGTACACGATGGAGAATCACAATAGTGTGCTTGGGGATAGA
GA

consensusID : consensus_3987#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [GGAGGAGAAGAATCAAATCAAATCAATCAGTCGCAATCGAGGGGAATCCCACAATTCTGGACAATCCGAGACCCTCCCGCTCCGCTGGATTCCCCGCCTCCCCTTCTTGGATTGGGCTCAGCTGGGATGATTGGATTGCCGGTCGCGGTTTGAGCTGAGGAGATTCTTGCAGTCGAGGGGGGGAGGGATGGAGGTGAGCAAGGAGGAGTTCTTGAGGCAGTTCGGTGGCGACTATGGCTACCCGGGCGCGCCCAAGGGCGTCGACGAGATGCGCGCCGCCGAGTTCAAGCGGCTTGAAGGTGCGCCTAATCTCGACCTTGTCGATTCCCTTTTTGCCAAATTCTGGGAGGAAAAGTGGAATTCTATTAGTGTTTTGTGAGAACAAAAGGATGGATAGGAACTTGTGGCGTTCGGTCAGATGACCGCGTTTCTTGCTGTAACTCACTGTTGTATCGATAAATCTATTAGGTTTGTTGTTGCGGAGAGTGAAGAATCTAGCATCCTACCGAATTTTGCTACATAAGCTTCAACAATTGTGCTTGTTTTGATGTTTGGAACTGCAGTAGTGTGAGCTGCAAACTATGTAATAAGAATTGGCTATAGCTTCTATGAAAAAAA]

[-] EMBL CF320288             [GGAGGAGAAGAATCAAATCAAATCAATCAGTCGCAATCGAGGGGAATCCCACAATTCTGGACAATCCGAGACCCTCCCGCTCCGCTGGATTCCCCGCCTCCCCTTCTTGGATTGGGCTCAGCTGGGATGATTGGATTGCCGGTCGCGGTTTGAGCTGAGGAGATTCTTGCAGTCGAGGGGGGGAGGGATGGAGGTGAGCAAGGAGGAGTTCTTGAGGCAGTTCGGTGGCGACTATGGCTACCCGGGCGCGCCCAAGGGCGTCGACGAGATGCGCGCCGCCGAGTTCAAGCGGCTTGAAGGTGCGCCTAATCTCGACCTTGTCGATTCCCTTTTTGCCAAATTCTGGGAGGAAAAGTGGAATTCTATTAGTGTTTTGTGAGAACAAAAGGATGGATAGGAACTTGTGGCGTTCGGTCAGATGACCGCGTTTCTTGCTGTAACTCACTGTTGTATCGATAAATCTATTAGGTTTGTTGTTGCGGAGAGTGAAGAATCTAGCATCCTACCGAATTTTGCTACATAAGCTTCAACAATTGTGCTTGTTTTGATGTTTGGAACTGCAGTAGTGTGAGCTGCAAACTATGTAATAAGAATTGGCTATAGCTTCTATGAAAAAAA]




>consensus_3987#1
GGAGGAGAAGAATCAAATCAAATCAATCAGTCGCAATCGAGGGGAATCCCACAATTCTGG
ACAATCCGAGACCCTCCCGCTCCGCTGGATTCCCCGCCTCCCCTTCTTGGATTGGGCTCA
GCTGGGATGATTGGATTGCCGGTCGCGGTTTGAGCTGAGGAGATTCTTGCAGTCGAGGGG
GGGAGGGATGGAGGTGAGCAAGGAGGAGTTCTTGAGGCAGTTCGGTGGCGACTATGGCTA
CCCGGGCGCGCCCAAGGGCGTCGACGAGATGCGCGCCGCCGAGTTCAAGCGGCTTGAAGG
TGCGCCTAATCTCGACCTTGTCGATTCCCTTTTTGCCAAATTCTGGGAGGAAAAGTGGAA
TTCTATTAGTGTTTTGTGAGAACAAAAGGATGGATAGGAACTTGTGGCGTTCGGTCAGAT
GACCGCGTTTCTTGCTGTAACTCACTGTTGTATCGATAAATCTATTAGGTTTGTTGTTGC
GGAGAGTGAAGAATCTAGCATCCTACCGAATTTTGCTACATAAGCTTCAACAATTGTGCT
TGTTTTGATGTTTGGAACTGCAGTAGTGTGAGCTGCAAACTATGTAATAAGAATTGGCTA
TAGCTTCTATGAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3987#0      CGTCGTCTACCTCGCGCCGCTCACCTCTCGCCGTCGTCGAAGCCACACGCGCGCCACAAT 60
consensus_3987#1      ------------------------------------------------------------
                                                                                  

consensus_3987#0      TTCTTTTAATCCTCGGTGAGACGAGAGCACGAGACCCATCCCCAACGATCCCACATCCAC 120
consensus_3987#1      ------------------------------------------------------------
                                                                                  

consensus_3987#0      GGCGCTGACTTCTCCAGCTCCACTCCACGTCTCCCAGCACGAGGGGAGGAGAAGAATCAA 180
consensus_3987#1      --------------------------------------------GGAGGAGAAGAATCAA 16
                                                                  ****************

consensus_3987#0      ATCAAATCAATCAGTCGCAATCGAGGGGAATCCCACAATTCTGGACAATCCGAGACCCTG 240
consensus_3987#1      ATCAAATCAATCAGTCGCAATCGAGGGGAATCCCACAATTCTGGACAATCCGAGACCCTC 76
                      *********************************************************** 

consensus_3987#0      CCGCTCCGCTGGATTCCCCGACTCCCCTTCTTGGATTGGGCTAAACTGGGATGATTGGAT 300
consensus_3987#1      CCGCTCCGCTGGATTCCCCGCCTCCCCTTCTTGGATTGGGCTCAGCTGGGATGATTGGAT 136
                      ******************** ********************* * ***************

consensus_3987#0      TGCCGGCCGCGGTTTGAGCTGAGGAGATTCTTGCACACCAGGGGGGGAGGGATGGAGGTG 360
consensus_3987#1      TGCCGGTCGCGGTTTGAGCTGAGGAGATTCTTGCAGTCGAGGGGGGGAGGGATGGAGGTG 196
                      ****** ****************************  * *********************

consensus_3987#0      AGCAAGGAGGAGTTCTTGAGGCAGTTCGGTGGCGACTATGGCTACCCGGGCGCGCCCAAG 420
consensus_3987#1      AGCAAGGAGGAGTTCTTGAGGCAGTTCGGTGGCGACTATGGCTACCCGGGCGCGCCCAAG 256
                      ************************************************************

consensus_3987#0      GGCGTCGACGAGATGCGCGCCGCCGAGTTCAAGCGGCTTGAAGGGATGGCTTACCTGGAC 480
consensus_3987#1      GGCGTCGACGAGATGCGCGCCGCCGAGTTCAAGCGGCTTGAAGGTGCGCCTAATCTCGAC 316
                      ********************************************   * ** * ** ***

consensus_3987#0      CATGCCGGTGCGAC----GCTGTATTCAGAGGCGCAGATGGCGGATGTCTTGAAAGACCT 536
consensus_3987#1      CTTGTCGATTCCCTTTTTGCCAAATTCTGGGAGGAAAA--GTGGAATTCTATTAGTGTTT 374
                      * ** ** * *       **   **** * *  * * *  * ***  ***   *     *

consensus_3987#0      TGC---ATCCAATGTAT--ATGGGAACCCACATAGTCAGAGTGATTCAA-GCATGGCTGC 590
consensus_3987#1      TGTGAGAACAAAAGGATGGATAGGAACTTGTGGCGTTCGGTCAGATGACCGCGTTTCTTG 434
                      **    * * ** * **  ** *****       **  *      * *  ** *  **  

consensus_3987#0      GAGTGACCTCGTTACTGCTGCACGCCATCAGGTTTTAAAATACTTCAATGCATCTCCCAG 650
consensus_3987#1      CTGTAAC----TCACTGTTGTAT-CGATAAATCTATTAGGTTTGTTGTTGCGGAGAGTGA 489
                        ** **    * **** ** *  * ** *   * * *  *   *   ***         

consensus_3987#0      AGAATACAAGTGCATATTTACCTCTGGGGCAACAGC---AGCTCTGAAACTTGTTGGTGA 707
consensus_3987#1      AGAATCTAGCATCCTACCGAATTTTGCTACATAAGCTTCAACAATTGTGCTTGTT--TTG 547
                      *****  *    * **   *  * **   **  ***   * *  *    ******  *  

consensus_3987#0      ATGTTTTCCA-TGGAGTAGAGAAAGCTGTTACATGTACACGATGGAGAATCACAATAGTG 766
consensus_3987#1      ATGTTTGGAACTGCAGTAGTGTGAGCTGCAAACTATGTA--ATAAGAATTGGCTATAGCT 605
                      ******   * ** ***** *  *****  *  * *  *  **    * *  * ****  

consensus_3987#0      TGCTTGGGGATAGAGA 782
consensus_3987#1      TCTATGAAAAAAA--- 618
                      *   **   * *