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Oryza sativa
cluster # 3990 cluster # 3990       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3990#0 length = 1314 sequences # 3  

consensusID : consensus_3990#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1314
fasta sequence
                              [GTGCCGCAGTAGCATCCACCGGCCTCCAGGTTGAACCAGTGAGCTTTTCTGCCCAGGCATCATCAATCTCCTCCGGCACCACATCATTCAACCGGGGAGGTAGTACACCCACATGTTCCTCCATTGCATGATGTACATGTGATTCAGCATCAGCAAAATGCTCCTCACACCGGCCACATACCAAAAACTCCCATTTTCCACTCCTAGTGGCAAACCTTATCGCCTCGTTAAGCACATCAGATACCAAACTGGCAGCATCTTTCTCCTTATGCATCGCAGTAGCGTAGTGTGACTTGAGCTCAGAAATACTGGTGCTTAAGAATGCAAGCCTCCGATCCATGGGCACTGTGGCCCAGAACTCACGCACCTGATTCATGCGACCGGACACTGGCGAAGCTGCTGCCTTCCTGGACCCACCCTTCCTCCGGTCAGCGCGATGCCCAGACACTGATGACTGACACGACGAGGAGGGGGCCTCATCCCCCGGTGACTGTGATTGGGAGGTGGATGATGAGGCCGATGTGGCATTGTGCTTCTGCTGCTCCATCAGCCTCATCGCAGCAAGCCGCACCTCAATCTCCTTGCGCCGCTCTTCAGGGGTCTTATTAGCCTTCTTGATCTCATTCGGGCGGCGCGGCGCAGGCGCAGCAGGCAGGAGCCGGACCTCGGAAGAATCGTCGGCGCCGCCGCGGCGAATGGGGAAAACCCGAACCTTATCCTCAGGTGTGTAGCCCATGTTCATGTTCTTAACCCACAGCGAGATGGACGTCATGTTGGACCTCTGCAACAGGTTGCTGAGCTCGGCCTTGACCTGCTCGACGTCCGGGGCCGGTAGCCTGAGGGAGTGGGGCGCCGGGTCGGTGGGGCTCTGGATGGCCATCCCGCGGTTGCACTCGCTGCTGGCGGCCTCGTACCCGGTGGTGTCGGAGGCGATCTCGTAGAGGAGCATGGCGTGGAAGTGGGCGAGCTCGATGGAGTCCGGGGCCAGCTCGACCGCCTTGCGGGCCGCCTCGAGCGCGAGCCGCTGGTGCCGCGCGCGGGAGACGGGCTCGTCGAGGACCGCGGCGTAGCGCGCCAGCACCGTCCCCTGCGCGCAGAGCAGCAGCGGCGATCCCTCCCCGTGCTTCCCGACCGCGTCCTTCACCACCCGGAGCGCCTTCGCGTGGTTCCCCCGCTGCAGCGCTGCCAGGGCCTTCTCGCAGACGGCCCGGACCGCGGCGCCGCCATCCGCCGCCGCCGCATCGGGGTGGCCGGCCGCCGGAGGGGAGGGAGGAGTAGGGTTTGCGGCGGCGGCGGCGGTGTTGAGGGTTCGCT]

[+] EMBL CB662292             [GTGCCGCAGTAGCATCCACCGGCCTCCAGGTTGAACCAGTGAGCTTTTCTGCCCAGGCATCATCAATCTCCTCCGGCACCACATCATTCAACCGGGGAGGTAGTACACCCACATGTTCCTCCATTGCATGATGTACATGTGATTCAGCATCAGCAAAATGCTCCTCACACCGGCCACATACCAAAAACTCCCATTTTCCACTCCTAGTGGCAAACCTTATCGCCTCGTTAAGCACATCAGATACCAAACTGGCAGCATCTTTCTCCTTATGCATCGCAGTAGCGTAGTGTGACTTGAGCTCAGAAATACTGGTGCTTAAGAATGCAAGCCTCCGATCCATGGGCACTGTGGCCCAGAACTCACGCACCTGATTCATGCGACCGGACACTGGCGAAGCTGCTGCCTTCCTGGACCCACCCTTCCTCCGGTCAGCGCGATGCCCAGACACTGATGACTGACACGACGAGGAGGGGGCCTCATCCCCCGGTGACTGTGATTGGGAGGTGGATGATGAGGCCGATGTGGCATTGTGCTTCTGCTGCTCCATCAGCCTCATCGCAGCAAGCCGCACCTCAATCTCCTTGCGCCGCTCTTCAGGGGTCTTATTAGCCTTCTTGATCTCATTCGGGCGGCGCGGCGCAGGCGCAGCAGGCAGGAGCCGGACCTCGGAAGAATCGTCGGCGCCGCCGCGGCGAATGGGGAAAACCCGAACCTTATCCTCAGGTGTGTAGCCCATGTTCATGTTCTTAACCCACAGCGAGATGGACGTCATGTTGGACCTCTGCAACAGGTTGCTGAGCTCGGCCTTGACCTGCTCGACGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB642102             [  GCCGCAGTAGCATCCACCGGCCTCCAGGTTGAACCAGTGAGCTTTTCTGCNCAGGCATCATCAATCTCCTCCGGCACCACATCATTCAACCGGGGAGGTAGTACACCCACATGTTCCTCCATTGCATGATGTACATGTGATTCAGCATCAGCAAAATGCTCCTCACACCGGCCACATACCAAAAACTCCCATTTTCCACTCCTAGTGGCAAACCTTATCGCCTCGTTAAGCACATCAGATACCAAACTGGCAGCATCTTTCTCCTTATGCATCGCAGTAGCGTAGTGTGACTTGAGCTCAGAAATACTGGTGCTTAAGAATGCAAGCCTCCGATCCATGGGCACTGTGGCCCAGAACTCACGCACCTGATTCATGCGACCGGACACTGGCGAAGCTGCTGCCTTCCTGGACCCACCCTTCCTCCGGTCAGCGCGATGCCCAGACACTGATGACTGACACGACGAGGAGGGGGCCTCATCCCCCGGTGACTGTGATTGGGAGGTGGATGATGAGGCCGATGTGGCATTGTGCTTCTGCTGCTCCATCAGCCTCATCGCAGCAAGCCGCACCTCAATCTCCTTGCGCCGCTCTTCAGGGGTCTTATTAGCCTTCTTGATCTCATTCGGGCGGCGCGGCGCAGGCGCAGCAGGCAGGAGCCGGACCTCGGAAGAATCGTCGGCGCCGCCGCGGCGAATGGGGAAAACCCGAACGTTATCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB662291             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGCGGCGCGGCGCAGGCGCAGCAGGCAGGAGCCGGACCTCGGAAGAATTGTCGGCGCCGCCGCGGCGAATGGGGAAAACCCGAACCTTATCCTCAGGTGTGTAGCCCATGTTCATGTTCTTAACCCACAGCGAGATGGACGTCATGTTGGACCTCTGCAACAGGTTGCTGAGCTCGGCCTTGACCTGCTCGACGTCCGGGGCCGGTAGCCTGAGGGAGTGGGGCGCCGGGTCGGTGGGGCTCTGGATGGCCATCCCGCGGTTGCACTCGCTGCTGGCGGCCTCGTACCCGGTGGTGTCGGAGGCGATCTCGTAGAGGAGCATGGCGTGGAAGTGGGCGAGCTCGATGGAGTCCGGGGCCAGCTCGACCGCCTTGCGGGCCGCCTCGAGCGCGAGCCGCTGGTGCCGCGCGCGGGAGACGGGCTCGTCGAGGACCGCGGCGTAGCGCGCCAGCACCGTCCCCTGCGCGCAGAGCAGCAGCGGCGATCCCTCCCCGTGCTTCCCGACCGCGTCCTTCACCACCCGGAGCGCCTTCGCGTGGTTCCCCCGCTGCAGCGCTGCCAGGGCCTTCTCGCAGACGGCCCGGACCGCGGCGCCGCCATCCGCCGCCGCCGCATCGGGGTGGCCGGCCGCCGGAGGGGAGGGAGGAGTAGGGTTTGCGGCGGCGGCGGCGGTGTTGAGGGTTCGCT]


>consensus_3990#0 GTGCCGCAGTAGCATCCACCGGCCTCCAGGTTGAACCAGTGAGCTTTTCTGCCCAGGCAT CATCAATCTCCTCCGGCACCACATCATTCAACCGGGGAGGTAGTACACCCACATGTTCCT CCATTGCATGATGTACATGTGATTCAGCATCAGCAAAATGCTCCTCACACCGGCCACATA CCAAAAACTCCCATTTTCCACTCCTAGTGGCAAACCTTATCGCCTCGTTAAGCACATCAG ATACCAAACTGGCAGCATCTTTCTCCTTATGCATCGCAGTAGCGTAGTGTGACTTGAGCT CAGAAATACTGGTGCTTAAGAATGCAAGCCTCCGATCCATGGGCACTGTGGCCCAGAACT CACGCACCTGATTCATGCGACCGGACACTGGCGAAGCTGCTGCCTTCCTGGACCCACCCT TCCTCCGGTCAGCGCGATGCCCAGACACTGATGACTGACACGACGAGGAGGGGGCCTCAT CCCCCGGTGACTGTGATTGGGAGGTGGATGATGAGGCCGATGTGGCATTGTGCTTCTGCT GCTCCATCAGCCTCATCGCAGCAAGCCGCACCTCAATCTCCTTGCGCCGCTCTTCAGGGG TCTTATTAGCCTTCTTGATCTCATTCGGGCGGCGCGGCGCAGGCGCAGCAGGCAGGAGCC GGACCTCGGAAGAATCGTCGGCGCCGCCGCGGCGAATGGGGAAAACCCGAACCTTATCCT CAGGTGTGTAGCCCATGTTCATGTTCTTAACCCACAGCGAGATGGACGTCATGTTGGACC TCTGCAACAGGTTGCTGAGCTCGGCCTTGACCTGCTCGACGTCCGGGGCCGGTAGCCTGA GGGAGTGGGGCGCCGGGTCGGTGGGGCTCTGGATGGCCATCCCGCGGTTGCACTCGCTGC TGGCGGCCTCGTACCCGGTGGTGTCGGAGGCGATCTCGTAGAGGAGCATGGCGTGGAAGT GGGCGAGCTCGATGGAGTCCGGGGCCAGCTCGACCGCCTTGCGGGCCGCCTCGAGCGCGA GCCGCTGGTGCCGCGCGCGGGAGACGGGCTCGTCGAGGACCGCGGCGTAGCGCGCCAGCA CCGTCCCCTGCGCGCAGAGCAGCAGCGGCGATCCCTCCCCGTGCTTCCCGACCGCGTCCT TCACCACCCGGAGCGCCTTCGCGTGGTTCCCCCGCTGCAGCGCTGCCAGGGCCTTCTCGC AGACGGCCCGGACCGCGGCGCCGCCATCCGCCGCCGCCGCATCGGGGTGGCCGGCCGCCG GAGGGGAGGGAGGAGTAGGGTTTGCGGCGGCGGCGGCGGTGTTGAGGGTTCGCT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)