cluster # 4002

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Oryza sativa
cluster # 4002 cluster # 4002 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4002#0 length = 577 sequences # 2

consensus_4002#1 length = 356 sequences # 1

consensusID : consensus_4002#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 577
fasta sequence

                              [AATATCTTAGCCTACAAATATTCAAAATAAGATATCCAAATTTGATATGGAGCATATCAAATTGACATTACTCCCTAATATATATTTAGGGATCGAGTAGGGAATGTTCAAATGACTTATATTTATGGATCAGGAGGAATATTAGATTTGTCTTGAAAAATACTTTCATGCAGTTATATTTTAAATACATTTATGTATGGATGGCATATGATTAGAAAAATTAATGATTAAAACTATGTTCTGAAGTTCGTGTCAATATTTTAATTCATAAGAAAGAAATATTGGATGGAACATAGTGACAAATAATGTATCCTAGCATGGCTAATTCTCATGCAAAACTAATTGCAGATGGGACAAAAGCGCTATTTCTATTTTGCCGGAGTACCTGAAAAAGTTCTATATTAAATTGCTAATCAACTTTGAGGAGTTTGAGCACCAAGTGTCCGACAACGAAAAATACAAGGTTACTTACACCAAACAAGAGGTAGAAGCATCCAAATATCTCTATGGGAAATTTTTTGTTATTACCACTATAAGTTATATTCTTATTTAGCGACAACCAACTAAATTTTGAGGT]

[-] EMBL CB671315             [AATATCTTAGCCTACAAATATTCAAAATAAGATATCCAAATTTGATATGGAGCATATCAAATTGACATTACTCCCTAATATATATTTAGGGATCGAGTAGGGAATGTTCAAATGACTTATATTTATGGATCAGGAGGAATATTAGATTTGTCTTGAAAAATACTTTCATGCAGTTATATTTTAAATACATTTATGTATGGATGGCATATGATTAGAAAAATTAATGATTAAAACTATGTTCTGAAGTTCGTGTCAATATTTTAATTCATAAGAAAGAAATATTGGATGGAACATAGTGACAAATAATGTATCCTAGCATGGCTAATTCTCATGCAAAACTAATTGCAGATGGGACAAAAGCGCTATTTCTATTTTGCCGGAGTACCTGAAAAAGTTCTATATTAAATTGCTAATCAACTTTGAGGAGTTTGAGCACCAAGTGTCCGACAACGAAAAATACAAGGTTACTTACACCAAACAAGAGGTAGAAGCATCCAAATATCTCTATGGGAA                                                                ]
[+] EMBL CB671314             [       TAGCCTACAAATATTCAAAATAAGATATCCAAATTTGATATGGAGCATATCAAATTGACATTACTCCCTAATATATATTTAGGGATCGAGTAGGGAATGTTCAAATGACTTATATTTATGGATCAGGAGGAATATTAGATTTGTCTTGAAAAATACTTTCATGCAGTTATATTTTAAATACATTTATGTATGGATGGCATATGATTAGAAAAATTAATGATTAAAACTATGTTCTGAAGTTCGTGTCAATATTTTAATTCATAAGAAAGAAATATTGGATGGAACATAGTGACAAATAATGTATCCTAGCATGGCTAATTCTCATGCAAAACTAATTGCAGATGGGACAAAAGCGCTATTTCTATTTTGCCGGAGTACCTGAAAAAGTTCTATATTAAATTGCTAATCAACTTTGAGGAGTTTGAGCACCAAGTGTCCGACAACGAAAAATACAAGGTTACTTACACCAAACAAGAGGTAGAAGCATCCAAATATCTCTATGGGAAATTTTTTGTTATTACCACTATAAGTTATATTCTTATTTAGCGACAACCAACTAAATTTTGAGGT]




>consensus_4002#0
AATATCTTAGCCTACAAATATTCAAAATAAGATATCCAAATTTGATATGGAGCATATCAA
ATTGACATTACTCCCTAATATATATTTAGGGATCGAGTAGGGAATGTTCAAATGACTTAT
ATTTATGGATCAGGAGGAATATTAGATTTGTCTTGAAAAATACTTTCATGCAGTTATATT
TTAAATACATTTATGTATGGATGGCATATGATTAGAAAAATTAATGATTAAAACTATGTT
CTGAAGTTCGTGTCAATATTTTAATTCATAAGAAAGAAATATTGGATGGAACATAGTGAC
AAATAATGTATCCTAGCATGGCTAATTCTCATGCAAAACTAATTGCAGATGGGACAAAAG
CGCTATTTCTATTTTGCCGGAGTACCTGAAAAAGTTCTATATTAAATTGCTAATCAACTT
TGAGGAGTTTGAGCACCAAGTGTCCGACAACGAAAAATACAAGGTTACTTACACCAAACA
AGAGGTAGAAGCATCCAAATATCTCTATGGGAAATTTTTTGTTATTACCACTATAAGTTA
TATTCTTATTTAGCGACAACCAACTAAATTTTGAGGT

consensusID : consensus_4002#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 356
fasta sequence

                              [AAATTAATGAGTTAAAAACTATGTTCTGAAGTTCGTGTCAATATTTTAATTCATAAGAAAGAAATATTGGATGGAACATAGTGCAAATAATGTATCCTAGCATGCTAATTCTCATCAAACTAATTCCAGATGGGACAAAGCCTATTTCTATTTTCCCGGAGTACCTGAAAAAGTTCTATATTAAATTGCTAATCAACTTTGAGGAGTTTGACCACCAGTGTCCGACACGAAAAATACCAGGTTACTTACACCAACCAGAGGTAGAACCATCCAATATCTCTATGGGAAATTTTTTGTTATTACCCTATAAGTTATATTCTATTACACACCCACTAAATTTGAGTAGCCCTGCCAAA]

[+] EMBL BI797707             [AAATTAATGAGTTAAAAACTATGTTCTGAAGTTCGTGTCAATATTTTAATTCATAAGAAAGAAATATTGGATGGAACATAGTGCAAATAATGTATCCTAGCATGCTAATTCTCATCAAACTAATTCCAGATGGGACAAAGCCTATTTCTATTTTCCCGGAGTACCTGAAAAAGTTCTATATTAAATTGCTAATCAACTTTGAGGAGTTTGACCACCAGTGTCCGACACGAAAAATACCAGGTTACTTACACCAACCAGAGGTAGAACCATCCAATATCTCTATGGGAAATTTTTTGTTATTACCCTATAAGTTATATTCTATTACACACCCACTAAATTTGAGTAGCCCTGCCAAA]




>consensus_4002#1
AAATTAATGAGTTAAAAACTATGTTCTGAAGTTCGTGTCAATATTTTAATTCATAAGAAA
GAAATATTGGATGGAACATAGTGCAAATAATGTATCCTAGCATGCTAATTCTCATCAAAC
TAATTCCAGATGGGACAAAGCCTATTTCTATTTTCCCGGAGTACCTGAAAAAGTTCTATA
TTAAATTGCTAATCAACTTTGAGGAGTTTGACCACCAGTGTCCGACACGAAAAATACCAG
GTTACTTACACCAACCAGAGGTAGAACCATCCAATATCTCTATGGGAAATTTTTTGTTAT
TACCCTATAAGTTATATTCTATTACACACCCACTAAATTTGAGTAGCCCTGCCAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4002#0      AATATCTTAGCCTACAAATATTCAAAATAAGATATCCAAATTTGATATGGAGCATATCAA 60
consensus_4002#1      ------------------------------------------------------------
                                                                                  

consensus_4002#0      ATTGACATTACTCCCTAATATATATTTAGGGATCGAGTAGGGAATGTTCAAATGACTTAT 120
consensus_4002#1      ------------------------------------------------------------
                                                                                  

consensus_4002#0      ATTTATGGATCAGGAGGAATATTAGATTTGTCTTGAAAAATACTTTCATGCAGTTATATT 180
consensus_4002#1      ------------------------------------------------------------
                                                                                  

consensus_4002#0      TTAAATACATTTATGTATGGATGGCATATGATTAGAAAAATTAATGATT--AAAACTATG 238
consensus_4002#1      -------------------------------------AAATTAATGAGTTAAAAACTATG 23
                                                           ********** *  *********

consensus_4002#0      TTCTGAAGTTCGTGTCAATATTTTAATTCATAAGAAAGAAATATTGGATGGAACATAGTG 298
consensus_4002#1      TTCTGAAGTTCGTGTCAATATTTTAATTCATAAGAAAGAAATATTGGATGGAACATAGTG 83
                      ************************************************************

consensus_4002#0      ACAAATAATGTATCCTAGCATGGCTAATTCTCATGCAAAACTAATTGCAGATGGGACAAA 358
consensus_4002#1      -CAAATAATGTATCCTAGCATG-CTAATTCTCATC--AAACTAATTCCAGATGGGACAAA 139
                       ********************* ***********   ********* *************

consensus_4002#0      AGCGCTATTTCTATTTTGCCGGAGTACCTGAAAAAGTTCTATATTAAATTGCTAATCAAC 418
consensus_4002#1      GC--CTATTTCTATTTTCCCGGAGTACCTGAAAAAGTTCTATATTAAATTGCTAATCAAC 197
                          ************* ******************************************

consensus_4002#0      TTTGAGGAGTTTGAGCACCAAGTGTCCGACAACGAAAAATACAAGGTTACTTACACCAAA 478
consensus_4002#1      TTTGAGGAGTTTGACCACCA-GTGTCCGACA-CGAAAAATACCAGGTTACTTACACCAAC 255
                      ************** ***** ********** ********** **************** 

consensus_4002#0      CAAGAGGTAGAAGCATCCAAATATCTCTATGGGAAATTTTTTGTTATTACCACTATAAGT 538
consensus_4002#1      CA-GAGGTAGAACCATCCAA-TATCTCTATGGGAAATTTTTTGTTATTACC-CTATAAGT 312
                      ** ********* ******* ****************************** ********

consensus_4002#0      TATATTCTTATTTAGCGACAACCAACTAAATTTTGAGGT---------- 577
consensus_4002#1      TATATTCT-ATTACAC----ACCCACTAAATTTGAGTAGCCCTGCCAAA 356
                      ******** ***   *    *** *********