cluster # 4019

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Oryza sativa
cluster # 4019 cluster # 4019 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4019#0 length = 626 sequences # 2

consensus_4019#1 length = 414 sequences # 1

consensusID : consensus_4019#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 626
fasta sequence

                              [TCTCATTGTTCATACCTCAGCAGAACATTAAGCCTTTCCCCTCCTCCACTCCATTCACAGCTTCCAGATGGCTCAGGTAAGCAAGTGCAACTCTTGTTTATGGTTCAATTCCCTGATTCCTTCGGCGGTTCACGCCTTCGTGTCGTCGGATGATAATTCTCAGCAGAAGGTGGTGCTGAGGGTTCCAACCATGACCGACGACAAGATTAAGCAGAAAGCCATTGAAGCCGTTGCAGAC-ATCTACGGTATCGATTCCATAGCTGCAGATTTGAAGGACAATAAGATGACCATCATCGGTGAAATGGACA-CAGTGG-CAATTG-CAAAG-AAG-TTAAAGAAGATTGGGAAGATTGACATTGTGTCTGTTGGACCTG-CAAAAGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAGAAAGAAGAGAAGAAGGAAGAGAAGAAGGAGGAGAAGAAAGAGGAAAAGAAAGAAGAGAAGAAATGATAAAATTATGAAATATATAACACCATTGCATAGTGTCTCTCCCATCTGCAAGTGAAACAGCCAATACCTTGGACTTTTGATCGATGTTTTATGTGAAATTACTCTGTACCATAATACTGTAAAGAACATATTGGTACACGTAAGTAATATT]

[+] EMBL AK120420             [TCTCATTGTTCATACCTCAGCAGAACATTAAGCCTTTCCCCTCCTCCACTCCATTCACAGCTTCCAGATGGCTCAGGTAAGCAAGTGCAACTCTTGTTTATGGTTCAATTCCCTGATTCCTTCGGCGGTTCACGCCTTCGTGTCGTCGGATGATAATTCTCAGCAGAAGGTGGTGCTGAGGGTTCCAACCATGACCGACGACAAGATTAAGCAGAAAGCCATTGAAGCCGTTGCAGAC ATCTACGGTATCGATTCCATAGCTGCAGATTTGAAGGACAATAAGATGACCATCATCGGTGAAATGGACA CAGTGG CAATTG CAAAG AAG TTAAAGAAGATTGGGAAGATTGACATTGTGTCTGTTGGACCTG CAAAAGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAGAAAGAAGAGAAGAAGGAAGAGAAGAAGGAGGAGAAGAAAGAGGAAAAGAAAGAAGAGAAGAAATGATAAAATTATGAAATATATAACACCATTGCATAGTGTCTCTCCCATCTGCAAGTGAAACAGCCAATACCTTGGACTTTTGATCGATGTTTTATGTGAAATTACTCTGTACCATAATACTGTAAAGAACATATTGGTACACGTAAGTAATATT]
[+] EMBL BI800191             [                                                                                   AGTCCAACTCTTGTTTATGGTTCAATTCCCTGATTCCTTCGGCGGTTCACGCCTTCGTGTCGTCGGATGATAATTCTCAGCAGAAGGTGGTGCTGAGGGTTCCAACCATGACCGACGACAAGATTAAGCAGAAAGCC TTGAA CC TT CAGACTATCTACGGTATCGATTCCATAGCTGCAGATTTAAAGGAC ATAAGATGACCATCATCGGTGAAATGAACACCAGTGGCCAATTGCCAAAGAAAGTTTAAAGAAGATTGGGAAGATTGACTTTGTGTCTGTTGGACCTGCCAAAAGAAag                                                                                                                                                                                                                                                     ]




>consensus_4019#0
TCTCATTGTTCATACCTCAGCAGAACATTAAGCCTTTCCCCTCCTCCACTCCATTCACAG
CTTCCAGATGGCTCAGGTAAGCAAGTGCAACTCTTGTTTATGGTTCAATTCCCTGATTCC
TTCGGCGGTTCACGCCTTCGTGTCGTCGGATGATAATTCTCAGCAGAAGGTGGTGCTGAG
GGTTCCAACCATGACCGACGACAAGATTAAGCAGAAAGCCATTGAAGCCGTTGCAGACAT
CTACGGTATCGATTCCATAGCTGCAGATTTGAAGGACAATAAGATGACCATCATCGGTGA
AATGGACACAGTGGCAATTGCAAAGAAGTTAAAGAAGATTGGGAAGATTGACATTGTGTC
TGTTGGACCTGCAAAAGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAGAAAGAAGAGAA
GAAGGAAGAGAAGAAGGAGGAGAAGAAAGAGGAAAAGAAAGAAGAGAAGAAATGATAAAA
TTATGAAATATATAACACCATTGCATAGTGTCTCTCCCATCTGCAAGTGAAACAGCCAAT
ACCTTGGACTTTTGATCGATGTTTTATGTGAAATTACTCTGTACCATAATACTGTAAAGA
ACATATTGGTACACGTAAGTAATATT

consensusID : consensus_4019#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 414
fasta sequence

                              [AGAGAGACAAGGGGAAAAGACAGTGGCAATTGCAAAGAAGTTAAAGAAGATTGGGAAGATTGACATTGTGTTTGTTGGACCTGCAAAAGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAGAAAGAAGAGAAGAAGGAAGAGAAGAAGGAGGAGAAGAAAGAGGAAAAGACAGTGGCAATTGCAAAGAAGTTAAAGAAGATTGGGAAGATTGACATTGTGTTTGTTGGACCTGCAAAAGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAGAAAGAAGAGAAGAAGGAAGAGAAGAAGGAGGAGAAGAAAGAGGAAAAGACAGTGGCAATTGCAAAGAAGTTAAAGAAGATTGGGAAGATTGACATTGTGTCTGTTGGACCTGCAAAAGAAGAGAAGAAGGAAAAAAAAAAAAA]

[-] EMBL CA761181             [AGAGAGACAAGGGGAAAAGACAGTGGCAATTGCAAAGAAGTTAAAGAAGATTGGGAAGATTGACATTGTGTTTGTTGGACCTGCAAAAGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAGAAAGAAGAGAAGAAGGAAGAGAAGAAGGAGGAGAAGAAAGAGGAAAAGACAGTGGCAATTGCAAAGAAGTTAAAGAAGATTGGGAAGATTGACATTGTGTTTGTTGGACCTGCAAAAGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAGAAAGAAGAGAAGAAGGAAGAGAAGAAGGAGGAGAAGAAAGAGGAAAAGACAGTGGCAATTGCAAAGAAGTTAAAGAAGATTGGGAAGATTGACATTGTGTCTGTTGGACCTGCAAAAGAAGAGAAGAAGGAAAAAAAAAAAAA]




>consensus_4019#1
AGAGAGACAAGGGGAAAAGACAGTGGCAATTGCAAAGAAGTTAAAGAAGATTGGGAAGAT
TGACATTGTGTTTGTTGGACCTGCAAAAGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAA
GAAAGAAGAGAAGAAGGAAGAGAAGAAGGAGGAGAAGAAAGAGGAAAAGACAGTGGCAAT
TGCAAAGAAGTTAAAGAAGATTGGGAAGATTGACATTGTGTTTGTTGGACCTGCAAAAGA
AGAGAAGAAGGAAGAAAAGAAAGAGGAGAAGAAAGAAGAGAAGAAGGAAGAGAAGAAGGA
GGAGAAGAAAGAGGAAAAGACAGTGGCAATTGCAAAGAAGTTAAAGAAGATTGGGAAGAT
TGACATTGTGTCTGTTGGACCTGCAAAAGAAGAGAAGAAGGAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4019#0      TCTCATTGTTCATACCTCAGCAGAACATTAAGCCTTTCCCCTCCTCCACTCCATTCACAG 60
consensus_4019#1      ------------------------------------------------------------
                                                                                  

consensus_4019#0      CTTCCAGATGGCTCAGGTAAGCAAGTGCAACTCTTGTTTATGGTTCAATTCCCTGATTCC 120
consensus_4019#1      ------------------------------------------------------------
                                                                                  

consensus_4019#0      TTCGGCGGTTCACGCCTTCGTGTCGTCGGATGATAATTCTCAGCAGAAGGTGGTGCTGAG 180
consensus_4019#1      -------------AGAGAGACAAGGGGAAAAGACAGTGGCAATTGCAAAGAAGTTAAAGA 47
                                              *    * ** * *    *    ** *  **      

consensus_4019#0      GGTTCCAACCATGACCGACGACAAGATTAAGCAGAAAGCCATTGAAGCCGTTGCAGACAT 240
consensus_4019#1      AGATTGGG--AAGATTGACATTGTGTTTGTTGGACCTGCAAAAGAAGA-GAAGAAGGAAG 104
                       * *      * **  ***     * **         ** *  ****  *  * **  * 

consensus_4019#0      CTACGGTATCGATTCCATAGCTGCAGATTTGAAGGACAATAAGATGACCATCATCGGTGA 300
consensus_4019#1      AAAAGAAA--GAGGAGAAGAAAGAAGAGAAGAAGGAAGAGAAGAAGGAGGAGAAGAAAGA 162
                        * *  *  **    *     * ***   ******  * **** *      *     **

consensus_4019#0      AATGGACACAGTGGCAATTGCAAAGAAGTTAAAGAAGATTGGGAAGATTGACATTGTGTC 360
consensus_4019#1      GGAAAAGACAGTGGCAATTGCAAAGAAGTTAAAGAAGATTGGGAAGATTGACATTGTGTT 222
                           * **************************************************** 

consensus_4019#0      TGTTGGACCTGCAAAAGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAGAAAGAAGAGAA 420
consensus_4019#1      TGTTGGACCTGCAAAAGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAGAAAGAAGAGAA 282
                      ************************************************************

consensus_4019#0      GAAGGAAGAGAAGAAGGAGGAGAAGAAAGAGGAAAAGAAAGAAGAGAAGAAATGATAAAA 480
consensus_4019#1      GAAGGAAGAGAAGAAGGAGGAGAAGAAAGAGGAAAAGACAGTGGCAATT--GCAAAGAAG 340
                      ************************************** **  *  *       *  ** 

consensus_4019#0      TTATGAAATATATAACACCATTGCATAGTGTCTCTCCCATCTGCAAGTGAAACAGCCAAT 540
consensus_4019#1      TTAAAGAAGATTGGGAAGATTGACATTGTGTCTGTTGGACCTGCAAAAGAAGAGAAGAAG 400
                      ***   ** **     *   *  *** ****** *   * ******  ***      ** 

consensus_4019#0      ACCTTGGACTTTTGATCGATGTTTTATGTGAAATTACTCTGTACCATAATACTGTAAAGA 600
consensus_4019#1      GAAAAAAAAAAAAA---------------------------------------------- 414
                             *                                                    

consensus_4019#0      ACATATTGGTACACGTAAGTAATATT 626
consensus_4019#1      --------------------------