These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4044#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 741 fasta sequence [TCTTTTTTTTAAGAAGATAGCAATGTTGGCCCGCAGATAAGCTTATTGTACACAGATATGACAGAGCAGGACTATGGTAGCTTAATGCCAGCAGTAAAGCAAAAAAAAAAGTACAGAGAAGTTGGGACTGATGACAACAATGTCGAGCTCAACAGGACTACAGGAGAACTGAAAAGAGGCTGATCACCTATCATCATGCTATTCATGTTGCAAGAATCATACAAGCAAGCTTAACTTCATGGCCAATGGAGCCACTTTACAAACGAGTACATGGAAAAGATGCTGCTCAAAATAATTAGGTGGCACATATAAATCTTGAACAAAATCTACAAGCAAAAAAGCTGCATCCTAGAAAAAAGGGAAAAAGAAGAACGAAGAAATATACCAGCCGCACCACAAGATTGCCCCTTTATGCCAAGTGGAGTCATTTTTGGGATACAAAAGCTCCAAGCAAAAGCTCCTTGACATCTCTTCTTATGTCCTCACAATTACATTGCCGTCGCCGCCATCCTCCTGTATGTATGTAGTTGCAACAGGCATAATTGAAACCCTCTAAATACTATCTCTCTGAATCCTCGGGAATTGATGATAGCCTCTGTTGCTCAAGAAATGATGAATCCAGAAATTTTGCAACAAATGCCCACAACCTGTATACATCCTCAAAGTTTGTGAGGAACCCAAGAGAAGCTGTAACCACTTCAATCCCAATTATATCATTCTTGCTACTTTTCTTCTCACGTC] [+] EMBL CB672593 [TCTTTTTTTTAAGAAGATAGCAATGTTGGCCCGCAGATAAGCTTATTGTACACAGATATGACAGAGCAGGACTATGGTAGCTTAATGCCAGCAGTAAAGCAAAAAAAAAAGTACAGAGAAGTTGGGACTGATGACAACAATGTCGAGCTCAACAGGACTACAGGAGAACTGAAAAGAGGCTGATCACCTATCATCATGCTATTCATGTTGCAAGAATCATACAAGCAAGCTTAACTTCATGGCCAATGGAGCCACTTTACAAACGAGTACATGGAAAAGATGCTGCTCAAAATAATTAGGTGGCACATATAAATCTTGAACAAAATCTACAAGCAAAAAAGCTGCATCCTAGAAAAAAGGGAAAAAGAAGAACGAAGAAATATACCAGCCGCACCACAAGATTGCCCCTTTATGCCAAGTGGAGTCATTTTTGGGATACAAAAGCTCCAAGCAAAAGCTCCTTGACATCTCTTCTTATGTCCTCACAATTACATTGCCGTCGCCGCCATCCTCCTGTATGTATGTAGTTGCAACAGGCATAATTGAAACCCTCTAAATACTATCTCTCTGAATCCTCGGGAATTGATGATAGCCTCTGTTGCTCAAGAAATGATGAATCCAGAAATTTTGCAACAAATGCCCACAACCTGTATACATCCTCAAAGTTTGTGAGGAACCCAAGAGAAGCTGTAACCACTTCAATCCCAATTATATCATTCTTGCTACTTTTCTTCTCACGTC] consensusID : consensus_4044#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence [TTTTTTTTTTGGCAAGAATCATACAAGCAAGCTTAACTTCAGGGCCAAGGGAGCCACTTTACAAACGAGTACATGGAAAAGATGCTGCTCAAAATAATTAGGTGGCACATATAAATCTGGAACAAAATCTACAAGCAAAAAAGCTGCATCCTAGAAAAAGAGGGAAAAAGAAGAACGAAGAAATATACCAGCCGCACCACAAGATGGCCCCTTTATGCCAAGGGGAGTCATTTTGGGGATACAAAAGCTCCAAGCAAAAGCTCCTGTGACATCTCTTCTTATGTCCTCACAATTACATGTGCGTCGCCGCCATCCTCCGTGTATGTATGTAGTTGCAACAGGCATAATGGAAACCCTCTAAATATATCTCTCTGAATCCTCGGGAATGTGATGATAGCCTCTGTGGCTCAAGAAGTGTGAATCCAG] [-] EMBL BI812568 [TTTTTTTTTTGGCAAGAATCATACAAGCAAGCTTAACTTCAGGGCCAAGGGAGCCACTTTACAAACGAGTACATGGAAAAGATGCTGCTCAAAATAATTAGGTGGCACATATAAATCTGGAACAAAATCTACAAGCAAAAAAGCTGCATCCTAGAAAAAGAGGGAAAAAGAAGAACGAAGAAATATACCAGCCGCACCACAAGATGGCCCCTTTATGCCAAGGGGAGTCATTTTGGGGATACAAAAGCTCCAAGCAAAAGCTCCTGTGACATCTCTTCTTATGTCCTCACAATTACATGTGCGTCGCCGCCATCCTCCGTGTATGTATGTAGTTGCAACAGGCATAATGGAAACCCTCTAAATATATCTCTCTGAATCCTCGGGAATGTGATGATAGCCTCTGTGGCTCAAGAAGTGTGAATCCAG] consensusID : consensus_4044#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 156 fasta sequence [ACGCAAGCAAATATACCCAGCCGCACCACCAAGCATGGCCCCTTTATGCCAAGGTGGAGTCATTTTTGGGGATACAAAATGCTCCAAAGCAAAAGCTCCTTGACATCTCTTCTTATGTCCTCACAATTACATTGCCGTACGCCGCACATCCTCCGG] [-] EMBL BI809347 [ACGCAAGCAAATATACCCAGCCGCACCACCAAGCATGGCCCCTTTATGCCAAGGTGGAGTCATTTTTGGGGATACAAAATGCTCCAAAGCAAAAGCTCCTTGACATCTCTTCTTATGTCCTCACAATTACATTGCCGTACGCCGCACATCCTCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4044#0 TCTTTTTTTTAAGAAGATAGCAATGTTGGCCCGCAGATAAGCTTATTGTACACAGATATG 60 consensus_4044#1 ------------------------------------------------------------ consensus_4044#2 ------------------------------------------------------------ consensus_4044#0 ACAGAGCAGGACTATGGTAGCTTAATGCCAGCAGTAAAGCAAAAAAAAAAGTACAGAGAA 120 consensus_4044#1 ------------------------------------------------------------ consensus_4044#2 ------------------------------------------------------------ consensus_4044#0 GTTGGGACTGATGACAACAATGTCGAGCTCAACAGGACTACAGGAGAACTGAAAAGAGGC 180 consensus_4044#1 ------------------------------------------------------------ consensus_4044#2 ------------------------------------------------------------ consensus_4044#0 TGATCACCTATCATCATGCTATTCATGTTGCAAGAATCATACAAGCAAGCTTAACTTCAT 240 consensus_4044#1 ------------------TTTTTTTTTTGGCAAGAATCATACAAGCAAGCTTAACTTCAG 42 consensus_4044#2 ------------------------------------------------------------ consensus_4044#0 GGCCAATGGAGCCACTTTACAAACGAGTACATGGAAAAGATGCTGCTCAAAATAATTAGG 300 consensus_4044#1 GGCCAAGGGAGCCACTTTACAAACGAGTACATGGAAAAGATGCTGCTCAAAATAATTAGG 102 consensus_4044#2 ------------------------------------------------------------ consensus_4044#0 TGGCACATATAAATCTTGAACAAAATCTACAAGCAAAAAAGCTGCATCCTAGAAAAA-AG 359 consensus_4044#1 TGGCACATATAAATCTGGAACAAAATCTACAAGCAAAAAAGCTGCATCCTAGAAAAAGAG 162 consensus_4044#2 ------------------------------------------------------------ consensus_4044#0 GGAAAAAGAAGAACGAAGAAATATACC-AGCCGCACCACAAG--ATTGCCCCTTTATGCC 416 consensus_4044#1 GGAAAAAGAAGAACGAAGAAATATACC-AGCCGCACCACAAG--ATGGCCCCTTTATGCC 219 consensus_4044#2 ----------ACGCAAGCAAATATACCCAGCCGCACCACCAAGCATGGCCCCTTTATGCC 50 * * ********* *********** * ** ************* consensus_4044#0 AAGT-GGAGTCATTTT-TGGGATACAAAA-GCTCCAA-GCAAAAGCTCCT-TGACATCTC 471 consensus_4044#1 AAGG-GGAGTCATTTT-GGGGATACAAAA-GCTCCAA-GCAAAAGCTCCTGTGACATCTC 275 consensus_4044#2 AAGGTGGAGTCATTTTTGGGGATACAAAATGCTCCAAAGCAAAAGCTCCT-TGACATCTC 109 *** *********** *********** ******* ************ ********* consensus_4044#0 TTCTTATGTCCTCACAATTACATTGCCGT-CGCCGC-CATCCTCC-TGTATGTATGTAGT 528 consensus_4044#1 TTCTTATGTCCTCACAATTACATGTGCGT-CGCCGC-CATCCTCCGTGTATGTATGTAGT 333 consensus_4044#2 TTCTTATGTCCTCACAATTACATTGCCGTACGCCGCACATCCTCCGG------------- 156 *********************** *** ****** ******** consensus_4044#0 TGCAACAGGCATAATTGAAACCCTCTAAATACTATCTCTCTGAATCCTCGGGAAT-TGAT 587 consensus_4044#1 TGCAACAGGCATAATGGAAACCCTCTAAATA-TATCTCTCTGAATCCTCGGGAATGTGAT 392 consensus_4044#2 ------------------------------------------------------------ consensus_4044#0 GATAGCCTCTGTTGCTCAAGAAATGATGAATCCAGAAATTTTGCAACAAATGCCCACAAC 647 consensus_4044#1 GATAGCCTCTGTGGCTCAAGAAGTG-TGAATCCAG------------------------- 426 consensus_4044#2 ------------------------------------------------------------ consensus_4044#0 CTGTATACATCCTCAAAGTTTGTGAGGAACCCAAGAGAAGCTGTAACCACTTCAATCCCA 707 consensus_4044#1 ------------------------------------------------------------ consensus_4044#2 ------------------------------------------------------------ consensus_4044#0 ATTATATCATTCTTGCTACTTTTCTTCTCACGTC 741 consensus_4044#1 ---------------------------------- consensus_4044#2 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||