These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4050#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1847 fasta sequence [CGCCTCACTCCCTCTCTCTGTTTCCTCTTCTTCTTCTTCCTCCCGCCGGTCAGCTCAGCTCGCCTCGTCTCCTCCATTTTGGCGACGCGAGCGAGCATATTAAAGCTGTGCCGGCGGCTGCAACTTTGCCGCCATTTATTTAGCTCCGGCTCTTTTAAAAGCTCTCTTCTCCTGCTGCCATCTTCTTCTGGTTGGCACCACCATTCCATATATACCATCTCCCTCCTCCTCCCGCGCTCGCTCTTCGCCAATGGCCAAGCGACGCAGCAACGGCGAGACCGCCGCCGCGAGCAGCGACGACTCTAGCTCCGGCGTCTGCGGCGGCGGCGGCGGCGGTGAGGTTGAGCCGAGGCGGCGGCAGAAGCGGCCGCGGAGGAGCGCCCCGCGGGATTGCCCCTCCCAGCGCAGCTCCGCGTTCCGCGGCGTCACACGGCACCGGTGGACGGGGCGGTTCGAGGCGCATCTCTGGGACAAGAACACCTGGAACGAGTCGCAGAGCAAGAAGGGCAGACAAGTTTACCTCGGGGCTTACGACGGCGAGGAAGCGGCGGCGCGCGCCTACGACCTCGCCGCATTGAAGTACTGGGGCCACGACACCGTCCTCAACTTCCCTCTGTCAACATATGACGAGGAATTGAAGGAAATGGAGGGGCAGTCCAGGGAAGAGTACATCGGATCGCTCCGGAGGAAGAGCAGTGGCTTCTCAAGAGGGGTGTCCAAGTACAGAGGAGTTGCAAGGCATCATCACAACGGCAAATGGGAGGCTCGGATTGGGCGTGTGTTCGGCAACAAATACCTCTACCTAGGTACTTATGCAACACAAGAGGAGGCGGCCGTGGCGTACGACATCGCGGCGATCGAGCACCGCGGCCTCAACGCCGTCACCAACTTCGACATCAATCTCTACATCAGGTGGTACCACGGCTCTTGCCGCTCCAGCAGCGCCGCCGCCGCCACCACCATCGAAGACGATGATTTCGCCGAAGCCATCGCCGCCGCGTTGCAAGGCGTCGACGAGCAGCCGTCGTCGTCGCCGGCGACGACGCGCCAGCTGCAAACCGCGGACGACGACGACGACGACCTCGTGGCGCAGCTCCCGCCCCAGCTGAGGCCGCTGGCTCGCGCGGCGTCCACCTCCCCGATCGGACTGCTGCTGCGGTCGCCCAAGTTCAAGGAGATCATCGAGCAGGCGGCGGCCGCGGCGGCGTCGTCCTCTGGTAGCAGCAGTAGCAGCAGCACAGACTCACCTTCTTCTTCGTCGTCGTCATCGCTGTCGCCGTCGCCATTGCCATCGCCGCCGCCGCAGCAGCAGCCAACCGTACCGAAGGACGACCAGTACAACGTCGACATGTCGTCGGTGGCGGCGGCGAGGTGCAGCTTCCCGGACGACGTGCAGACGTACTTCGGGCTGGACGACGACGGCTTCGGGTACCCGGAGGTGGACACGTTCTTGTTCGGGGATTTGGGCGCGTACGCGGCGCCCATGTTTCAGTTCGAGCTCGACGTCTGAACTCTCAACTCCGACCAGGGTGTTTCGGGAGGCCCACAATCCCAGCCTGTTCCCGTAGATGGGCTGGAAAGATCGAATCAAATTTGGGCCTATTCAGGGGATGGGCTGGGAGAATTGATATGGGCCGGCAGGGATGGCCGAAAGGGAAGGCCTCCCAAGTTTTGGCTGTCAAGAAGCTAGAACTGAGTTCTCTCTCAAAAGAGAGAGAGAGAGAGAAGCTAGAACTGAGGATTAGTTGCTTACTCGCAAATACTAGTAGTTTGGAGGAAGAGTAAAATATTGGTTTATTTGTTGCCCATCTCTGCGAAGGGGAATTTACCGTAATAAAGAGTACATA] [+] EMBL AK106769 [CGCCTCACTCCCTCTCTCTGTTTCCTCTTCTTCTTCTTCCTCCCGCCGGTCAGCTCAGCTCGCCTCGTCTCCTCCATTTTGGCGACGCGAGCGAGCATATTAAAGCTGTGCCGGCGGCTGCAACTTTGCCGCCATTTATTTAGCTCCGGCTCTTTTAAAAGCTCTCTTCTCCTGCTGCCATCTTCTTCTGGTTGGCACCACCATTCCATATATACCATCTCCCTCCTCCTCCCGCGCTCGCTCTTCGCCAATGGCCAAGCGACGCAGCAACGGCGAGACCGCCGCCGCGAGCAGCGACGACTCTAGCTCCGGCGTCTGCGGCGGCGGCGGCGGCGGTGAGGTTGAGCCGAGGCGGCGGCAGAAGCGGCCGCGGAGGAGCGCCCCGCGGGATTGCCCCTCCCAGCGCAGCTCCGCGTTCCGCGGCGTCACACGGCACCGGTGGACGGGGCGGTTCGAGGCGCATCTCTGGGACAAGAACACCTGGAACGAGTCGCAGAGCAAGAAGGGCAGACAAGTTTACCTCGGGGCTTACGACGGCGAGGAAGCGGCGGCGCGCGCCTACGACCTCGCCGCATTGAAGTACTGGGGCCACGACACCGTCCTCAACTTCCCTCTGTCAACATATGACGAGGAATTGAAGGAAATGGAGGGGCAGTCCAGGGAAGAGTACATCGGATCGCTCCGGAGGAAGAGCAGTGGCTTCTCAAGAGGGGTGTCCAAGTACAGAGGAGTTGCAAGGCATCATCACAACGGCAAATGGGAGGCTCGGATTGGGCGTGTGTTCGGCAACAAATACCTCTACCTAGGTACTTATGCAACACAAGAGGAGGCGGCCGTGGCGTACGACATCGCGGCGATCGAGCACCGCGGCCTCAACGCCGTCACCAACTTCGACATCAATCTCTACATCAGGTGGTACCACGGCTCTTGCCGCTCCAGCAGCGCCGCCGCCGCCACCACCATCGAAGACGATGATTTCGCCGAAGCCATCGCCGCCGCGTTGCAAGGCGTCGACGAGCAGCCGTCGTCGTCGCCGGCGACGACGCGCCAGCTGCAAACCGCGGACGACGACGACGACGACCTCGTGGCGCAGCTCCCGCCCCAGCTGAGGCCGCTGGCTCGCGCGGCGTCCACCTCCCCGATCGGACTGCTGCTGCGGTCGCCCAAGTTCAAGGAGATCATCGAGCAGGCGGCGGCCGCGGCGGCGTCGTCCTCTGGTAGCAGCAGTAGCAGCAGCACAGACTCACCTTCTTCTTCGTCGTCGTCATCGCTGTCGCCGTCGCCATTGCCATCGCCGCCGCCGCAGCAGCAGCCAACCGTACCGAAGGACGACCAGTACAACGTCGACATGTCGTCGGTGGCGGCGGCGAGGTGCAGCTTCCCGGACGACGTGCAGACGTACTTCGGGCTGGACGACGACGGCTTCGGGTACCCGGAGGTGGACACGTTCTTGTTCGGGGATTTGGGCGCGTACGCGGCGCCCATGTTTCAGTTCGAGCTCGACGTCTGAACTCTCAACTCCGACCAGGGTGTTTCGGGAGGCCCACAATCCCAGCCTGTTCCCGTAGATGGGCTGGAAAGATCGAATCAAATTTGGGCCTATTCAGGGGATGGGCTGGGAGAATTGATATGGGCCGGCAGGGATGGCCGAAAGGGAAGGCCTCCCAAGTTTTGGCTGTCAAGAAGCTAGAACTGAGTTCTCTCTCAAAAGAGAGAGAGAGAGAGAAGCTAGAACTGAGGATTAGTTGCTTACTCGCAAATACTAGTAGTTTGGAGGAAGAGTAAAATATTGGTTTATTTGTTGCCCATCTCTGCGAAGGGGAATTTACCGTAATAAAGAGTACATA] [+] EMBL CB674595 [ CCTCCCGCCGGTCAGCTCAGCTCGCCTCGTCTCCTCCATTTTGGCGACGCGAGCGAGCATATTAAAGCTGTGCCGGCGGCTGCAACTTTGCCGCCATTTATTTAGCTCCGGCTCTTTTAAAAGCTCTCTTCTCCTGCTGCCATCTTCTTCTGGTTGGCACCACCATTCCATATATACCATCTCCCTCCTCCTCCCGCGCTCGCTCTTCGCCAATGGCCAAGCGACGCAGCAACGGCGAGACCGCCGCCGCGAGCAGCGACGACTCTAGCTCCGGCGTCTGCGGCGGCGGCGGCGGCGGTGAGGTTGAGCCGAGGCGGCGGCAGAAGCGGCCGCGGAGGAGCGCCCCGCGGGATTGCCCCTCCCAGCGCAGCTCCGCGTTCCGCGGCGTCACACGGCACCGGTGGACGGGGCGGTTCGAGGCGCATCTCTGGGACAAGAACACCTGGAACGAGTCGCAGAGCAAGAAGGGCAGACAAGTTTACCTCGGGGCTTACGACGGCGAGGAAGCGGCGGCGCGCGCCTACGACCTCGCCGCATTGAAGTACTGGGGCCACGACACCGTCCTCAACTTCCCTCTGTCAACATATGACGAGGAATTGAAGGAAATGGAGGGGCAGTCCAGGGAAGAGTACATCGGATCGCTCCGGAGGAAGAGCAGTGGCTTCTCAAGAGGGGTGTCCAAGTACAGAGGAGTTGCAAGGCATCATCACAACGGCAAATGGGAGGCTCGGATTGGGCGTGTGTTCGGCAACAAATACCTCTACCTAGGTAC ] consensusID : consensus_4050#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence [TGCAAACCGCGGACGACGACGACGACGACCTCGTGGCGCAGCTCCCGCCCCAGCTGAGGCCGCTGGCTCGCGCGGCGTCCACCTCCCCGATCGGACTGCTGCTGCGGTCGCCCAAGTTCAAGGAGATCATCGAGCAGGCGGCGGCCGCGGCGGCGTCGTCCTCTGGTAGCAGCAGTAGCAGCAGCACAGACTCACCTTCTTCTTCGTCGTCGTCATCGCTGTCGCCGTCGCCATTGCCATCGCCGCCGCCGCAGCAGCAGCCAACCGTACCGAAGGACGACCAGTACAACGTCGACATGTCGTCGGTGGCGGCGGCGAGGTGCAGCTTCCCGGACGACGTGCAGACGTACTTCGGGCTGGACGACGACGGCTTCGGGTACCCGGAGGTGGACACGTTCTTGTTCGGGGATTTGGGCGCGTACGCGGCGCCCATGTTTCAGTTCGAGCTCGACGTCTGAACTCTCAACTCCGACCAGGGTGTTTCGGGAGGCCCACAATCCCAGCCTGTTCCCGTAGATGGGCTGGAAAGATCGAATCAAATTTGGGCCTATTCAGGGGATGGGCTGGGAGAATTGATATGGGCCGGCAGGGATGGCCGAAAGGGAAGGCCTCCCAAGTTTTGGCTGTCAAGAAGCTAGAACTGAGTTCTCTCTCAAAAGAGAGAGAGAGAGAGAAGCTAGAACTGAGGATTAGTTGCTTACTCGCAAATACTAGTAGTTTGGAGGAAGAGTAAAATATTGGTTTATTTAAAAAAAAGA] [-] EMBL CB674596 [TGCAAACCGCGGACGACGACGACGACGACCTCGTGGCGCAGCTCCCGCCCCAGCTGAGGCCGCTGGCTCGCGCGGCGTCCACCTCCCCGATCGGACTGCTGCTGCGGTCGCCCAAGTTCAAGGAGATCATCGAGCAGGCGGCGGCCGCGGCGGCGTCGTCCTCTGGTAGCAGCAGTAGCAGCAGCACAGACTCACCTTCTTCTTCGTCGTCGTCATCGCTGTCGCCGTCGCCATTGCCATCGCCGCCGCCGCAGCAGCAGCCAACCGTACCGAAGGACGACCAGTACAACGTCGACATGTCGTCGGTGGCGGCGGCGAGGTGCAGCTTCCCGGACGACGTGCAGACGTACTTCGGGCTGGACGACGACGGCTTCGGGTACCCGGAGGTGGACACGTTCTTGTTCGGGGATTTGGGCGCGTACGCGGCGCCCATGTTTCAGTTCGAGCTCGACGTCTGAACTCTCAACTCCGACCAGGGTGTTTCGGGAGGCCCACAATCCCAGCCTGTTCCCGTAGATGGGCTGGAAAGATCGAATCAAATTTGGGCCTATTCAGGGGATGGGCTGGGAGAATTGATATGGGCCGGCAGGGATGGCCGAAAGGGAAGGCCTCCCAAGTTTTGGCTGTCAAGAAGCTAGAACTGAGTTCTCTCTCAAAAGAGAGAGAGAGAGAGAAGCTAGAACTGAGGATTAGTTGCTTACTCGCAAATACTAGTAGTTTGGAGGAAGAGTAAAATATTGGTTTATTTAAAAAAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4050#0 CGCCTCACTCCCTCTCTCTGTTTCCTCTTCTTCTTCTTCCTCCCGCCGGTCAGCTCAGCT 60 consensus_4050#1 ------------------------------------------------------------ consensus_4050#0 CGCCTCGTCTCCTCCATTTTGGCGACGCGAGCGAGCATATTAAAGCTGTGCCGGCGGCTG 120 consensus_4050#1 ------------------------------------------------------------ consensus_4050#0 CAACTTTGCCGCCATTTATTTAGCTCCGGCTCTTTTAAAAGCTCTCTTCTCCTGCTGCCA 180 consensus_4050#1 ------------------------------------------------------------ consensus_4050#0 TCTTCTTCTGGTTGGCACCACCATTCCATATATACCATCTCCCTCCTCCTCCCGCGCTCG 240 consensus_4050#1 ------------------------------------------------------------ consensus_4050#0 CTCTTCGCCAATGGCCAAGCGACGCAGCAACGGCGAGACCGCCGCCGCGAGCAGCGACGA 300 consensus_4050#1 ------------------------------------------------------------ consensus_4050#0 CTCTAGCTCCGGCGTCTGCGGCGGCGGCGGCGGCGGTGAGGTTGAGCCGAGGCGGCGGCA 360 consensus_4050#1 ------------------------------------------------------------ consensus_4050#0 GAAGCGGCCGCGGAGGAGCGCCCCGCGGGATTGCCCCTCCCAGCGCAGCTCCGCGTTCCG 420 consensus_4050#1 ------------------------------------------------------------ consensus_4050#0 CGGCGTCACACGGCACCGGTGGACGGGGCGGTTCGAGGCGCATCTCTGGGACAAGAACAC 480 consensus_4050#1 ------------------------------------------------------------ consensus_4050#0 CTGGAACGAGTCGCAGAGCAAGAAGGGCAGACAAGTTTACCTCGGGGCTTACGACGGCGA 540 consensus_4050#1 ------------------------------------------------------------ consensus_4050#0 GGAAGCGGCGGCGCGCGCCTACGACCTCGCCGCATTGAAGTACTGGGGCCACGACACCGT 600 consensus_4050#1 ------------------------------------------------------------ consensus_4050#0 CCTCAACTTCCCTCTGTCAACATATGACGAGGAATTGAAGGAAATGGAGGGGCAGTCCAG 660 consensus_4050#1 ------------------------------------------------------------ consensus_4050#0 GGAAGAGTACATCGGATCGCTCCGGAGGAAGAGCAGTGGCTTCTCAAGAGGGGTGTCCAA 720 consensus_4050#1 ------------------------------------------------------------ consensus_4050#0 GTACAGAGGAGTTGCAAGGCATCATCACAACGGCAAATGGGAGGCTCGGATTGGGCGTGT 780 consensus_4050#1 ------------------------------------------------------------ consensus_4050#0 GTTCGGCAACAAATACCTCTACCTAGGTACTTATGCAACACAAGAGGAGGCGGCCGTGGC 840 consensus_4050#1 ------------------------------------------------------------ consensus_4050#0 GTACGACATCGCGGCGATCGAGCACCGCGGCCTCAACGCCGTCACCAACTTCGACATCAA 900 consensus_4050#1 ------------------------------------------------------------ consensus_4050#0 TCTCTACATCAGGTGGTACCACGGCTCTTGCCGCTCCAGCAGCGCCGCCGCCGCCACCAC 960 consensus_4050#1 ------------------------------------------------------------ consensus_4050#0 CATCGAAGACGATGATTTCGCCGAAGCCATCGCCGCCGCGTTGCAAGGCGTCGACGAGCA 1020 consensus_4050#1 ------------------------------------------------------------ consensus_4050#0 GCCGTCGTCGTCGCCGGCGACGACGCGCCAGCTGCAAACCGCGGACGACGACGACGACGA 1080 consensus_4050#1 --------------------------------TGCAAACCGCGGACGACGACGACGACGA 28 **************************** consensus_4050#0 CCTCGTGGCGCAGCTCCCGCCCCAGCTGAGGCCGCTGGCTCGCGCGGCGTCCACCTCCCC 1140 consensus_4050#1 CCTCGTGGCGCAGCTCCCGCCCCAGCTGAGGCCGCTGGCTCGCGCGGCGTCCACCTCCCC 88 ************************************************************ consensus_4050#0 GATCGGACTGCTGCTGCGGTCGCCCAAGTTCAAGGAGATCATCGAGCAGGCGGCGGCCGC 1200 consensus_4050#1 GATCGGACTGCTGCTGCGGTCGCCCAAGTTCAAGGAGATCATCGAGCAGGCGGCGGCCGC 148 ************************************************************ consensus_4050#0 GGCGGCGTCGTCCTCTGGTAGCAGCAGTAGCAGCAGCACAGACTCACCTTCTTCTTCGTC 1260 consensus_4050#1 GGCGGCGTCGTCCTCTGGTAGCAGCAGTAGCAGCAGCACAGACTCACCTTCTTCTTCGTC 208 ************************************************************ consensus_4050#0 GTCGTCATCGCTGTCGCCGTCGCCATTGCCATCGCCGCCGCCGCAGCAGCAGCCAACCGT 1320 consensus_4050#1 GTCGTCATCGCTGTCGCCGTCGCCATTGCCATCGCCGCCGCCGCAGCAGCAGCCAACCGT 268 ************************************************************ consensus_4050#0 ACCGAAGGACGACCAGTACAACGTCGACATGTCGTCGGTGGCGGCGGCGAGGTGCAGCTT 1380 consensus_4050#1 ACCGAAGGACGACCAGTACAACGTCGACATGTCGTCGGTGGCGGCGGCGAGGTGCAGCTT 328 ************************************************************ consensus_4050#0 CCCGGACGACGTGCAGACGTACTTCGGGCTGGACGACGACGGCTTCGGGTACCCGGAGGT 1440 consensus_4050#1 CCCGGACGACGTGCAGACGTACTTCGGGCTGGACGACGACGGCTTCGGGTACCCGGAGGT 388 ************************************************************ consensus_4050#0 GGACACGTTCTTGTTCGGGGATTTGGGCGCGTACGCGGCGCCCATGTTTCAGTTCGAGCT 1500 consensus_4050#1 GGACACGTTCTTGTTCGGGGATTTGGGCGCGTACGCGGCGCCCATGTTTCAGTTCGAGCT 448 ************************************************************ consensus_4050#0 CGACGTCTGAACTCTCAACTCCGACCAGGGTGTTTCGGGAGGCCCACAATCCCAGCCTGT 1560 consensus_4050#1 CGACGTCTGAACTCTCAACTCCGACCAGGGTGTTTCGGGAGGCCCACAATCCCAGCCTGT 508 ************************************************************ consensus_4050#0 TCCCGTAGATGGGCTGGAAAGATCGAATCAAATTTGGGCCTATTCAGGGGATGGGCTGGG 1620 consensus_4050#1 TCCCGTAGATGGGCTGGAAAGATCGAATCAAATTTGGGCCTATTCAGGGGATGGGCTGGG 568 ************************************************************ consensus_4050#0 AGAATTGATATGGGCCGGCAGGGATGGCCGAAAGGGAAGGCCTCCCAAGTTTTGGCTGTC 1680 consensus_4050#1 AGAATTGATATGGGCCGGCAGGGATGGCCGAAAGGGAAGGCCTCCCAAGTTTTGGCTGTC 628 ************************************************************ consensus_4050#0 AAGAAGCTAGAACTGAGTTCTCTCTCAAAAGAGAGAGAGAGAGAGAAGCTAGAACTGAGG 1740 consensus_4050#1 AAGAAGCTAGAACTGAGTTCTCTCTCAAAAGAGAGAGAGAGAGAGAAGCTAGAACTGAGG 688 ************************************************************ consensus_4050#0 ATTAGTTGCTTACTCGCAAATACTAGTAGTTTGGAGGAAGAGTAAAATATTGGTTTATTT 1800 consensus_4050#1 ATTAGTTGCTTACTCGCAAATACTAGTAGTTTGGAGGAAGAGTAAAATATTGGTTTATTT 748 ************************************************************ consensus_4050#0 GTTGCCCATCTCTGCGAAGGGGAATTTACCGTAATAAAGAGTACATA 1847 consensus_4050#1 AAAAAAAAGA------------------------------------- 758 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||