These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4051#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1554 fasta sequence [CAAATCAACAACACACGATCAATCGATCGATTAATCCTCTCGAGTAATCGCCTTGAAATCATCGGTTGATTTCTTGCAGAGATTAAGTAGCAGCAGGTGTTCGTCGAGCCGAGCGGCGATGTCTCCCTCCCCTGATCTCGCCCGGATCCTCCCCCGCGTGCTCATCGTCTCCCGCCGCACCGTCCGCAAGAACAAGTTCGTCGACTTCGTCGGGGAGTACCACCTCGACCTCATCGTGGGATACGGCGCAGTGCCGGTGATCGTGCCGCGGGTCGCCGGCGTGCACACGCTGCTCGACTCGTTCGAGCCCATCCATGGCGTGCTGCTGTGCGAGGGCGAGGACGTCGACCCGTCGCTGTACGGCGGCGGCGGTGCGGGGTCAGGGGGGCTCTCGGCGGAGCAGCTCGACGCTGTGCGGAGCCTCCACCCGAGCGACGCCGCCATCGACCACGAGAAGGACTCCATCGAGCTCCGCCTCGCGCGCCGCTGCCTCGAGCGCAACATCCCCTTCCTCGGCATCTGCCGCGGCTCGCAGGTGCTCAACGTCGCCCGCGGCGGCACGCTCTACCAGGACGTCGACCACGAGCTCCCCGCCGCCGCCGCCGCCGTTCGCCACATCAACTACGACAACTACGACGGGCACCGCCACCCGGTGCGCGTCCTCCCCGGCACGCCGCTGCACGAGTGGTTCGCGGAGTCGCTCGACGGCGAGGACAGCCGGCTGACGGTGAACAGCTACCACCACCAGGGCGTGCGGCGGCTGGCGGAGCGGTTCGTGCCCATGGCGTTCGCGCCGGACGGCCTCGTCGAGGGGTTCTACGACCCCGACGCGTACAACCCCGGCGAGGGCAAGTTCATCATGGGGCTCCAGTTCCACCCGGAGCGCATGCGGAAGGCCGGCTCCGACGAGTTCGACTACCCGGGCTGCCCCATGGCCTACCAGGCGTTCGTCCGCGCCGTCGTCGCGTACCAGGAGAAGCTGGCCGCCGCCGCCGCCGCCATGCCCGCCTCGCCGAAGCTGAACCAGGAGATGGAGAAGCAGCGCAAGGTGCTCGTCCGGAGCTTCTCGCTCGCCAAGAACCTGTACGTCTCCGGCGCCGAAGCTGGCACGCCGCGGCCGGCCGAGCAGCGCGACCTCGACGCCGGCGCCGAGTTCCTCGAGCAGTCGAACACGGCGGCGCTGAGCGTGCAGCAGGAGAAGCGGCTGAAGCAGATGGGCGCGACGGTGAGGAACGCGTCGGGGTACATCAACCGGCTGAAGCTGAACGAGGAGCGGGAGGCGGCGGCGAGGGCGCTCATGGCGAAGATGTCCATCGACCAGCTCTCCGACCTCGCCTCCTTCTACCACATCATGGGGACCATCTGCTCCGAGGTGCTCGACAGGAAGCTGCACTCCGCTGCTCCCGCTCCATGAATCTCTCTTGCCTCGCTCTCCATCACACCATGCTGTGTGCTCCTGCTTGTTTGTTTGTTTGATCATTCTCATGACGACATGATTGATATTATCAAATGTTAATGCAAATGTTTACGAGATAATATTATCGTGTTTCTGTT] [+] EMBL AK106157 [CAAATCAACAACACACGATCAATCGATCGATTAATCCTCTCGAGTAATCGCCTTGAAATCATCGGTTGATTTCTTGCAGAGATTAAGTAGCAGCAGGTGTTCGTCGAGCCGAGCGGCGATGTCTCCCTCCCCTGATCTCGCCCGGATCCTCCCCCGCGTGCTCATCGTCTCCCGCCGCACCGTCCGCAAGAACAAGTTCGTCGACTTCGTCGGGGAGTACCACCTCGACCTCATCGTGGGATACGGCGCAGTGCCGGTGATCGTGCCGCGGGTCGCCGGCGTGCACACGCTGCTCGACTCGTTCGAGCCCATCCATGGCGTGCTGCTGTGCGAGGGCGAGGACGTCGACCCGTCGCTGTACGGCGGCGGCGGTGCGGGGTCAGGGGGGCTCTCGGCGGAGCAGCTCGACGCTGTGCGGAGCCTCCACCCGAGCGACGCCGCCATCGACCACGAGAAGGACTCCATCGAGCTCCGCCTCGCGCGCCGCTGCCTCGAGCGCAACATCCCCTTCCTCGGCATCTGCCGCGGCTCGCAGGTGCTCAACGTCGCCCGCGGCGGCACGCTCTACCAGGACGTCGACCACGAGCTCCCCGCCGCCGCCGCCGCCGTTCGCCACATCAACTACGACAACTACGACGGGCACCGCCACCCGGTGCGCGTCCTCCCCGGCACGCCGCTGCACGAGTGGTTCGCGGAGTCGCTCGACGGCGAGGACAGCCGGCTGACGGTGAACAGCTACCACCACCAGGGCGTGCGGCGGCTGGCGGAGCGGTTCGTGCCCATGGCGTTCGCGCCGGACGGCCTCGTCGAGGGGTTCTACGACCCCGACGCGTACAACCCCGGCGAGGGCAAGTTCATCATGGGGCTCCAGTTCCACCCGGAGCGCATGCGGAAGGCCGGCTCCGACGAGTTCGACTACCCGGGCTGCCCCATGGCCTACCAGGCGTTCGTCCGCGCCGTCGTCGCGTACCAGGAGAAGCTGGCCGCCGCCGCCGCCGCCATGCCCGCCTCGCCGAAGCTGAACCAGGAGATGGAGAAGCAGCGCAAGGTGCTCGTCCGGAGCTTCTCGCTCGCCAAGAACCTGTACGTCTCCGGCGCCGAAGCTGGCACGCCGCGGCCGGCCGAGCAGCGCGACCTCGACGCCGGCGCCGAGTTCCTCGAGCAGTCGAACACGGCGGCGCTGAGCGTGCAGCAGGAGAAGCGGCTGAAGCAGATGGGCGCGACGGTGAGGAACGCGTCGGGGTACATCAACCGGCTGAAGCTGAACGAGGAGCGGGAGGCGGCGGCGAGGGCGCTCATGGCGAAGATGTCCATCGACCAGCTCTCCGACCTCGCCTCCTTCTACCACATCATGGGGACCATCTGCTCCGAGGTGCTCGACAGGAAGCTGCACTCCGCTGCTCCCGCTCCATGAATCTCTCTTGCCTCGCTCTCCATCACACCATGCTGTGTGCTCCTGCTTGTTTGTTTGTTTGATCATTCTCATGACGACATGATTGATATTATCAAATGTTAATGCAAATGTTTACGAGATAATATTATCGTGTTTCTGTT] [+] EMBL OSC0361 [ CACGATCAATCGATCGATTAATCCTCTCGAGTAATCNCCTTGAAATCATCGGTTGATTTCTTGCAGAGATTAAGTAGCAGCAGGTGTTCGTCGAGCCGAGCGGCGATGTCTCCCTCCCCTGATCTCGCCCGGNTCCTCCCCCGCGTGCTCATCGTNTCCNGCCGCACCGTCCGCAAGAACAAGTTCGTNGACTTCGTGGNGGAGTACCACCTCGACCTCATCGTGGGATACGGCGCAGTGCCGGTAATCGTGCCGCGGGTNGCCGGCGTGCACACNTTGCTCGATTNGTTCGAGCCCATCCATGGn ] consensusID : consensus_4051#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [GCAGATGGGCGCGACGGTGAGGAACGCGTCGGGGTACATCAACCGGCTGAAGCTGAACGAGGAGCGGGAGGCGGCGGCGAGGGCGCTCATGGCGAAGATGTCCATCGACCAGCTCTCCGACCTCGCCTCCTTCTACCACATCATGGGGACCATCTGCTCCGAGGTGCTCGACAGGAAGCTGCACTCCGCTGCTCCCGCTCCATGAATCTCTCTTGCCTCGCTCTCCATCACACCATGCTGTGTGCTCCTGCTTGTTTGTTTGTTTGATCATTCTCATGACGACATGATTGATATTATCAAATGTTAATGCAAATGTTTACGAGATNAAAAAAAAAAAAA] [+] EMBL CA756726 [GCAGATGGGCGCGACGGTGAGGAACGCGTCGGGGTACATCAACCGGCTGAAGCTGAACGAGGAGCGGGAGGCGGCGGCGAGGGCGCTCATGGCGAAGATGTCCATCGACCAGCTCTCCGACCTCGCCTCCTTCTACCACATCATGGGGACCATCTGCTCCGAGGTGCTCGACAGGAAGCTGCACTCCGCTGCTCCCGCTCCATGAATCTCTCTTGCCTCGCTCTCCATCACACCATGCTGTGTGCTCCTGCTTGTTTGTTTGTTTGATCATTCTCATGACGACATGATTGATATTATCAAATGTTAATGCAAATGTTTACGAGATNAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4051#0 CAAATCAACAACACACGATCAATCGATCGATTAATCCTCTCGAGTAATCGCCTTGAAATC 60 consensus_4051#1 ------------------------------------------------------------ consensus_4051#0 ATCGGTTGATTTCTTGCAGAGATTAAGTAGCAGCAGGTGTTCGTCGAGCCGAGCGGCGAT 120 consensus_4051#1 ------------------------------------------------------------ consensus_4051#0 GTCTCCCTCCCCTGATCTCGCCCGGATCCTCCCCCGCGTGCTCATCGTCTCCCGCCGCAC 180 consensus_4051#1 ------------------------------------------------------------ consensus_4051#0 CGTCCGCAAGAACAAGTTCGTCGACTTCGTCGGGGAGTACCACCTCGACCTCATCGTGGG 240 consensus_4051#1 ------------------------------------------------------------ consensus_4051#0 ATACGGCGCAGTGCCGGTGATCGTGCCGCGGGTCGCCGGCGTGCACACGCTGCTCGACTC 300 consensus_4051#1 ------------------------------------------------------------ consensus_4051#0 GTTCGAGCCCATCCATGGCGTGCTGCTGTGCGAGGGCGAGGACGTCGACCCGTCGCTGTA 360 consensus_4051#1 ------------------------------------------------------------ consensus_4051#0 CGGCGGCGGCGGTGCGGGGTCAGGGGGGCTCTCGGCGGAGCAGCTCGACGCTGTGCGGAG 420 consensus_4051#1 ------------------------------------------------------------ consensus_4051#0 CCTCCACCCGAGCGACGCCGCCATCGACCACGAGAAGGACTCCATCGAGCTCCGCCTCGC 480 consensus_4051#1 ------------------------------------------------------------ consensus_4051#0 GCGCCGCTGCCTCGAGCGCAACATCCCCTTCCTCGGCATCTGCCGCGGCTCGCAGGTGCT 540 consensus_4051#1 ------------------------------------------------------------ consensus_4051#0 CAACGTCGCCCGCGGCGGCACGCTCTACCAGGACGTCGACCACGAGCTCCCCGCCGCCGC 600 consensus_4051#1 ------------------------------------------------------------ consensus_4051#0 CGCCGCCGTTCGCCACATCAACTACGACAACTACGACGGGCACCGCCACCCGGTGCGCGT 660 consensus_4051#1 ------------------------------------------------------------ consensus_4051#0 CCTCCCCGGCACGCCGCTGCACGAGTGGTTCGCGGAGTCGCTCGACGGCGAGGACAGCCG 720 consensus_4051#1 ------------------------------------------------------------ consensus_4051#0 GCTGACGGTGAACAGCTACCACCACCAGGGCGTGCGGCGGCTGGCGGAGCGGTTCGTGCC 780 consensus_4051#1 ------------------------------------------------------------ consensus_4051#0 CATGGCGTTCGCGCCGGACGGCCTCGTCGAGGGGTTCTACGACCCCGACGCGTACAACCC 840 consensus_4051#1 ------------------------------------------------------------ consensus_4051#0 CGGCGAGGGCAAGTTCATCATGGGGCTCCAGTTCCACCCGGAGCGCATGCGGAAGGCCGG 900 consensus_4051#1 ------------------------------------------------------------ consensus_4051#0 CTCCGACGAGTTCGACTACCCGGGCTGCCCCATGGCCTACCAGGCGTTCGTCCGCGCCGT 960 consensus_4051#1 ------------------------------------------------------------ consensus_4051#0 CGTCGCGTACCAGGAGAAGCTGGCCGCCGCCGCCGCCGCCATGCCCGCCTCGCCGAAGCT 1020 consensus_4051#1 ------------------------------------------------------------ consensus_4051#0 GAACCAGGAGATGGAGAAGCAGCGCAAGGTGCTCGTCCGGAGCTTCTCGCTCGCCAAGAA 1080 consensus_4051#1 ------------------------------------------------------------ consensus_4051#0 CCTGTACGTCTCCGGCGCCGAAGCTGGCACGCCGCGGCCGGCCGAGCAGCGCGACCTCGA 1140 consensus_4051#1 ------------------------------------------------------------ consensus_4051#0 CGCCGGCGCCGAGTTCCTCGAGCAGTCGAACACGGCGGCGCTGAGCGTGCAGCAGGAGAA 1200 consensus_4051#1 ------------------------------------------------------------ consensus_4051#0 GCGGCTGAAGCAGATGGGCGCGACGGTGAGGAACGCGTCGGGGTACATCAACCGGCTGAA 1260 consensus_4051#1 ---------GCAGATGGGCGCGACGGTGAGGAACGCGTCGGGGTACATCAACCGGCTGAA 51 *************************************************** consensus_4051#0 GCTGAACGAGGAGCGGGAGGCGGCGGCGAGGGCGCTCATGGCGAAGATGTCCATCGACCA 1320 consensus_4051#1 GCTGAACGAGGAGCGGGAGGCGGCGGCGAGGGCGCTCATGGCGAAGATGTCCATCGACCA 111 ************************************************************ consensus_4051#0 GCTCTCCGACCTCGCCTCCTTCTACCACATCATGGGGACCATCTGCTCCGAGGTGCTCGA 1380 consensus_4051#1 GCTCTCCGACCTCGCCTCCTTCTACCACATCATGGGGACCATCTGCTCCGAGGTGCTCGA 171 ************************************************************ consensus_4051#0 CAGGAAGCTGCACTCCGCTGCTCCCGCTCCATGAATCTCTCTTGCCTCGCTCTCCATCAC 1440 consensus_4051#1 CAGGAAGCTGCACTCCGCTGCTCCCGCTCCATGAATCTCTCTTGCCTCGCTCTCCATCAC 231 ************************************************************ consensus_4051#0 ACCATGCTGTGTGCTCCTGCTTGTTTGTTTGTTTGATCATTCTCATGACGACATGATTGA 1500 consensus_4051#1 ACCATGCTGTGTGCTCCTGCTTGTTTGTTTGTTTGATCATTCTCATGACGACATGATTGA 291 ************************************************************ consensus_4051#0 TATTATCAAATGTTAATGCAAATGTTTACGAGATAATATTATCGTGTTTCTGTT 1554 consensus_4051#1 TATTATCAAATGTTAATGCAAATGTTTACGAGATNAAAAAAAAAAAAA------ 339 ********************************** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||