cluster # 4069

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Oryza sativa
cluster # 4069 cluster # 4069 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4069#0 length = 956 sequences # 2

consensus_4069#1 length = 423 sequences # 1

consensusID : consensus_4069#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 956
fasta sequence

                              [CTTCTCTGAGCTTCCTCAAGCTTCTGAAAACAGCAAGAGATTAAATTATCGTAATTTTAAGCATCCAAGGTGTTTGGTGCCAGTGCTCGAGGACTGGAGATGGAGACCCAGGAGGCGAAGAGAGCAGATGTGGCGGCGGCGCCGGCGACGGCGACCGGCGGTGAGGCCGTCAAACCGGCCGCCGGCGATGCTGGCGCAGTAACCAAGACGAATGGACCTTCAGCACCAGCAGGCAAAGCTGCAACTCCAACGGGTTCGGTTGACAGAGACGCCATACTCGCAAACGTGGAGCTGGAGAGGAAACTGTCAATGATCAAGGCGTGGGAGGAGAGCGAGAAGAGCAAAGCGGAGAACAAGGCTCAGAAGAAGATGTCATCCATACTCTCATGGGAGAACACGAGGAAGGCAGCTATAGAAGCAAAACTGCGAACACAAGAGGAGAAGCTGGAGAGGAAGAAGGCGGAGTACGCGGAGAAGATGAGGAACCAGGTAGCGGCGATCCACAAGGCGGCGGAGGAGAAGAGGGCGACGGTGGAGGCGACGCGGCACGAGGAGATAATCAAGTATGAGGAGATGGCCGCCAAGCACAGGTCCAAGGGGACTACACCCACCAAATTCCTCTCTTGTTTCGGCTCCTAGAACCACAAAAAACGCTCCTGCAGTGCAGTCTCCTGTCCTGTGTGCTGATGCTTCTGTGTGTTGATATGGTGATCAGTTTGCAGTTTTGGGCTTGTTTCTCTTCTTTAATCTTCTGTGTTGAAGTTCCGGATTTCATGGCTCTGTCATGCTGCTGCTGTGTTTTCCTTTTCGCTGAAGATGTGATCATCATGTTTGGTGAGTGTAAGCATACTCAAAACACTTGTAAACAGTCAGTCACATGTAAACATACCACCTTTTTTGTGAATTTTGCGCTTCCAGAGATTAAGAAAAAAAGCGTGCCAATTTGTTTTGTTGGT]

[+] EMBL AK111296             [CTTCTCTGAGCTTCCTCAAGCTTCTGAAAACAGCAAGAGATTAAATTATCGTAATTTTAAGCATCCAAGGTGTTTGGTGCCAGTGCTCGAGGACTGGAGATGGAGACCCAGGAGGCGAAGAGAGCAGATGTGGCGGCGGCGCCGGCGACGGCGACCGGCGGTGAGGCCGTCAAACCGGCCGCCGGCGATGCTGGCGCAGTAACCAAGACGAATGGACCTTCAGCACCAGCAGGCAAAGCTGCAACTCCAACGGGTTCGGTTGACAGAGACGCCATACTCGCAAACGTGGAGCTGGAGAGGAAACTGTCAATGATCAAGGCGTGGGAGGAGAGCGAGAAGAGCAAAGCGGAGAACAAGGCTCAGAAGAAGATGTCATCCATACTCTCATGGGAGAACACGAGGAAGGCAGCTATAGAAGCAAAACTGCGAACACAAGAGGAGAAGCTGGAGAGGAAGAAGGCGGAGTACGCGGAGAAGATGAGGAACCAGGTAGCGGCGATCCACAAGGCGGCGGAGGAGAAGAGGGCGACGGTGGAGGCGACGCGGCACGAGGAGATAATCAAGTATGAGGAGATGGCCGCCAAGCACAGGTCCAAGGGGACTACACCCACCAAATTCCTCTCTTGTTTCGGCTCCTAGAACCACAAAAAACGCTCCTGCAGTGCAGTCTCCTGTCCTGTGTGCTGATGCTTCTGTGTGTTGATATGGTGATCAGTTTGCAGTTTTGGGCTTGTTTCTCTTCTTTAATCTTCTGTGTTGAAGTTCCGGATTTCATGGCTCTGTCATGCTGCTGCTGTGTTTTCCTTTTCGCTGAAGATGTGATCATCATGTTTGGTGAGTGTAAGCATACTCAAAACACTTGTAAACAGTCAGTCACATGTAAACATACCACCTTTTTTGTGAATTTTGCGCTTCCAGAGATTAAGAAAAAAAGCGTGCCAATTTGTTTTGTTGGT]
[-] EMBL CF312719             [                                                                                                                                                                                                                                                                                                                  TCAATGATCAAGGCGTGGGAGGAGAGCGAGAAGAGCAAAGCGGAGAACAAGGCTCAGAAGAAGATGTCATCCATACTCTCATGGGAGAACACGAGGAAGGCAGCTATAGAAGCAAAACTGCGAACACAAGAGGAGAAGCTGGAGAGGAAGAAGGCGGAGTACGCGGAGAAGATGAGGAACCAGGTAGCGGCGATCCACAAGGCGGCGGAGGAGAAGAGGGCGACGGTGGAGGCGACGCGGCACGAGGAGATAATCAAGTATGAGGAGATGGCCGCCAAGCACAGGTCCAAGGGGACTACACCCACCAAATTCCTCTCTTGTTTCGGCTCCTAGAACCACAAAAAACGCTCCTGCAGTGCAGTCTCCTGTCCTGTGTGCTGATGCTTCTGTGTGTTGATATGGTGATCAGTTTGCAGTTTTGGGCTTGTTTCTCTTCTTTAATCTTCTGTGTTGAAGTTCCGGATTTCATGGCTCTGTCATGCTGCTGCTGTGTTTTCCTTTTCGCTGAAGATGTGATCATCATGTTTGGTGAGTGTAAGCATACTCAAAACACTTGTAAACAGTCAGTCACATGTAAACATACCACCTTTTTTGTGAATTTTGCGCTTCCAGAGATTAAGAAAAA                         ]




>consensus_4069#0
CTTCTCTGAGCTTCCTCAAGCTTCTGAAAACAGCAAGAGATTAAATTATCGTAATTTTAA
GCATCCAAGGTGTTTGGTGCCAGTGCTCGAGGACTGGAGATGGAGACCCAGGAGGCGAAG
AGAGCAGATGTGGCGGCGGCGCCGGCGACGGCGACCGGCGGTGAGGCCGTCAAACCGGCC
GCCGGCGATGCTGGCGCAGTAACCAAGACGAATGGACCTTCAGCACCAGCAGGCAAAGCT
GCAACTCCAACGGGTTCGGTTGACAGAGACGCCATACTCGCAAACGTGGAGCTGGAGAGG
AAACTGTCAATGATCAAGGCGTGGGAGGAGAGCGAGAAGAGCAAAGCGGAGAACAAGGCT
CAGAAGAAGATGTCATCCATACTCTCATGGGAGAACACGAGGAAGGCAGCTATAGAAGCA
AAACTGCGAACACAAGAGGAGAAGCTGGAGAGGAAGAAGGCGGAGTACGCGGAGAAGATG
AGGAACCAGGTAGCGGCGATCCACAAGGCGGCGGAGGAGAAGAGGGCGACGGTGGAGGCG
ACGCGGCACGAGGAGATAATCAAGTATGAGGAGATGGCCGCCAAGCACAGGTCCAAGGGG
ACTACACCCACCAAATTCCTCTCTTGTTTCGGCTCCTAGAACCACAAAAAACGCTCCTGC
AGTGCAGTCTCCTGTCCTGTGTGCTGATGCTTCTGTGTGTTGATATGGTGATCAGTTTGC
AGTTTTGGGCTTGTTTCTCTTCTTTAATCTTCTGTGTTGAAGTTCCGGATTTCATGGCTC
TGTCATGCTGCTGCTGTGTTTTCCTTTTCGCTGAAGATGTGATCATCATGTTTGGTGAGT
GTAAGCATACTCAAAACACTTGTAAACAGTCAGTCACATGTAAACATACCACCTTTTTTG
TGAATTTTGCGCTTCCAGAGATTAAGAAAAAAAGCGTGCCAATTTGTTTTGTTGGT

consensusID : consensus_4069#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence

                              [AGCACCACCTCACCTCATTACCCGCGCTTTCCGCCCGGCAATTACACCAAGAAAAGGAGCAAAAGGAAAAAAAAGTCTCTTTATCGGAGGCGTAACATCTACTTCTGCTGCTGCTGTGCTCGAGGACTGGAGATGGAGACCCAGGAGGCGAAGAGAGCAGATGTGGCGGCGGCGCCGGCGACGGCGACCGGCGGTGAGGCCGTCAAACCGGCCGCCGGCGATGCTGGCGCAGTAACCAAGACGAATGGACCTTCAGCACCAGCAGGCAAAGCTGCAACTCCAACGGGNTTCGGTTGACAGAGACGCCATACTCGCAAACGTGGAGCTGGAGAGGAAACTGTCAATGATCAAGGCGTGGGAGGAGAGCGAGAAGAGCAAAGCGGAGAACAAGGCTCAGAAGAAGATGTCATCCATACTCTCATG]

[+] EMBL CF312718             [AGCACCACCTCACCTCATTACCCGCGCTTTCCGCCCGGCAATTACACCAAGAAAAGGAGCAAAAGGAAAAAAAAGTCTCTTTATCGGAGGCGTAACATCTACTTCTGCTGCTGCTGTGCTCGAGGACTGGAGATGGAGACCCAGGAGGCGAAGAGAGCAGATGTGGCGGCGGCGCCGGCGACGGCGACCGGCGGTGAGGCCGTCAAACCGGCCGCCGGCGATGCTGGCGCAGTAACCAAGACGAATGGACCTTCAGCACCAGCAGGCAAAGCTGCAACTCCAACGGGNTTCGGTTGACAGAGACGCCATACTCGCAAACGTGGAGCTGGAGAGGAAACTGTCAATGATCAAGGCGTGGGAGGAGAGCGAGAAGAGCAAAGCGGAGAACAAGGCTCAGAAGAAGATGTCATCCATACTCTCATG]




>consensus_4069#1
AGCACCACCTCACCTCATTACCCGCGCTTTCCGCCCGGCAATTACACCAAGAAAAGGAGC
AAAAGGAAAAAAAAGTCTCTTTATCGGAGGCGTAACATCTACTTCTGCTGCTGCTGTGCT
CGAGGACTGGAGATGGAGACCCAGGAGGCGAAGAGAGCAGATGTGGCGGCGGCGCCGGCG
ACGGCGACCGGCGGTGAGGCCGTCAAACCGGCCGCCGGCGATGCTGGCGCAGTAACCAAG
ACGAATGGACCTTCAGCACCAGCAGGCAAAGCTGCAACTCCAACGGGNTTCGGTTGACAG
AGACGCCATACTCGCAAACGTGGAGCTGGAGAGGAAACTGTCAATGATCAAGGCGTGGGA
GGAGAGCGAGAAGAGCAAAGCGGAGAACAAGGCTCAGAAGAAGATGTCATCCATACTCTC
ATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4069#0      -------------------------CTTCTCTGAGCTTCC-TCAAGCTTCTGAAAACAGC 34
consensus_4069#1      AGCACCACCTCACCTCATTACCCGCGCTTTCCGCCCGGCAATTACACCAAGAAAAGGAGC 60
                                                 * ** *  *  *  * *  *     ***  ***

consensus_4069#0      AAGAG---ATTAAATTATCGTAATTTTAAGCATCCAAGGTGTTT--GGTGCCA--GTGCT 87
consensus_4069#1      AAAAGGAAAAAAAAGTCTCTTTATCGGAGGCGTAACATCTACTTCTGCTGCTGCTGTGCT 120
                      ** **   *  *** * ** * **   * ** *   *  *  **  * ***    *****

consensus_4069#0      CGAGGACTGGAGATGGAGACCCAGGAGGCGAAGAGAGCAGATGTGGCGGCGGCGCCGGCG 147
consensus_4069#1      CGAGGACTGGAGATGGAGACCCAGGAGGCGAAGAGAGCAGATGTGGCGGCGGCGCCGGCG 180
                      ************************************************************

consensus_4069#0      ACGGCGACCGGCGGTGAGGCCGTCAAACCGGCCGCCGGCGATGCTGGCGCAGTAACCAAG 207
consensus_4069#1      ACGGCGACCGGCGGTGAGGCCGTCAAACCGGCCGCCGGCGATGCTGGCGCAGTAACCAAG 240
                      ************************************************************

consensus_4069#0      ACGAATGGACCTTCAGCACCAGCAGGCAAAGCTGCAACTCCAACGGGTT-CGGTTGACAG 266
consensus_4069#1      ACGAATGGACCTTCAGCACCAGCAGGCAAAGCTGCAACTCCAACGGGNTTCGGTTGACAG 300
                      *********************************************** * **********

consensus_4069#0      AGACGCCATACTCGCAAACGTGGAGCTGGAGAGGAAACTGTCAATGATCAAGGCGTGGGA 326
consensus_4069#1      AGACGCCATACTCGCAAACGTGGAGCTGGAGAGGAAACTGTCAATGATCAAGGCGTGGGA 360
                      ************************************************************

consensus_4069#0      GGAGAGCGAGAAGAGCAAAGCGGAGAACAAGGCTCAGAAGAAGATGTCATCCATACTCTC 386
consensus_4069#1      GGAGAGCGAGAAGAGCAAAGCGGAGAACAAGGCTCAGAAGAAGATGTCATCCATACTCTC 420
                      ************************************************************

consensus_4069#0      ATGGGAGAACACGAGGAAGGCAGCTATAGAAGCAAAACTGCGAACACAAGAGGAGAAGCT 446
consensus_4069#1      ATG--------------------------------------------------------- 423
                      ***                                                         

consensus_4069#0      GGAGAGGAAGAAGGCGGAGTACGCGGAGAAGATGAGGAACCAGGTAGCGGCGATCCACAA 506
consensus_4069#1      ------------------------------------------------------------
                                                                                  

consensus_4069#0      GGCGGCGGAGGAGAAGAGGGCGACGGTGGAGGCGACGCGGCACGAGGAGATAATCAAGTA 566
consensus_4069#1      ------------------------------------------------------------
                                                                                  

consensus_4069#0      TGAGGAGATGGCCGCCAAGCACAGGTCCAAGGGGACTACACCCACCAAATTCCTCTCTTG 626
consensus_4069#1      ------------------------------------------------------------
                                                                                  

consensus_4069#0      TTTCGGCTCCTAGAACCACAAAAAACGCTCCTGCAGTGCAGTCTCCTGTCCTGTGTGCTG 686
consensus_4069#1      ------------------------------------------------------------
                                                                                  

consensus_4069#0      ATGCTTCTGTGTGTTGATATGGTGATCAGTTTGCAGTTTTGGGCTTGTTTCTCTTCTTTA 746
consensus_4069#1      ------------------------------------------------------------
                                                                                  

consensus_4069#0      ATCTTCTGTGTTGAAGTTCCGGATTTCATGGCTCTGTCATGCTGCTGCTGTGTTTTCCTT 806
consensus_4069#1      ------------------------------------------------------------
                                                                                  

consensus_4069#0      TTCGCTGAAGATGTGATCATCATGTTTGGTGAGTGTAAGCATACTCAAAACACTTGTAAA 866
consensus_4069#1      ------------------------------------------------------------
                                                                                  

consensus_4069#0      CAGTCAGTCACATGTAAACATACCACCTTTTTTGTGAATTTTGCGCTTCCAGAGATTAAG 926
consensus_4069#1      ------------------------------------------------------------
                                                                                  

consensus_4069#0      AAAAAAAGCGTGCCAATTTGTTTTGTTGGT 956
consensus_4069#1      ------------------------------